genome.fa.s6.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  120  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37731325--37731375	6	8.5	6	93	0	75	19	0	78	1	0.85
37735582--37735617	18	2.0	18	88	0	54	36	13	8	41	1.75
37736116--37736148	6	5.5	6	100	0	66	0	18	15	66	1.25
37742949--37743044	32	3.0	32	100	0	192	18	18	3	59	1.51
37747608--37747700	26	3.3	29	77	14	81	54	4	0	40	1.20
37753485--37753845	195	1.8	196	88	2	557	32	22	16	28	1.95
37763761--37763948	104	1.8	104	85	2	270	38	13	13	34	1.83
37765489--37765523	6	5.8	6	96	0	52	40	25	34	0	1.56
37765943--37765997	2	27.5	2	88	0	83	43	0	5	50	1.25
37770043--37770085	16	2.6	16	79	17	52	58	0	0	41	0.98
37772550--37772597	23	2.1	23	100	0	96	43	8	0	47	1.33
37772803--37772839	18	2.1	18	90	10	58	40	0	0	59	0.97
37779684--37779730	21	2.1	23	88	7	71	44	4	0	51	1.21
37779742--37779782	21	1.9	22	85	5	57	41	7	0	51	1.30
37802771--37802817	21	2.3	20	85	7	60	23	6	2	68	1.24
37805681--37805734	27	2.0	28	85	3	74	46	0	3	50	1.19
37806508--37806546	2	19.5	2	100	0	78	48	0	0	51	1.00
37807585--37807865	138	2.0	138	99	0	553	27	20	13	37	1.91
37811929--37811974	14	3.2	14	80	17	58	26	0	4	69	1.07
37814973--37815015	20	2.2	20	87	4	61	25	0	13	60	1.34
37817488--37817536	26	1.9	25	87	4	71	55	18	8	18	1.67
37817530--37817590	31	2.0	31	83	0	77	54	11	3	31	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37821097--37821148	27	2.0	25	88	7	77	65	1	0	32	1.04
37821472--37821503	17	1.9	17	93	6	57	37	0	3	59	1.13
37821473--37821528	23	2.4	23	79	8	60	42	0	1	55	1.10
37822693--37822731	19	2.1	18	85	4	51	48	0	2	48	1.15
37830873--37831021	74	2.0	73	92	1	244	40	14	14	30	1.85
37841354--37841476	62	2.0	62	91	0	201	40	27	6	25	1.80
37859335--37859421	31	2.8	31	84	5	115	34	11	9	44	1.72
37860520--37860607	30	2.9	31	79	6	108	38	6	5	48	1.53
37861380--37861448	37	1.9	35	85	5	93	42	13	10	34	1.77
37864167--37864200	17	2.0	17	88	0	50	23	0	5	70	1.09
37875323--37875373	22	2.3	21	83	12	66	41	0	5	52	1.25
37875724--37875773	24	2.0	25	88	3	75	42	0	0	58	0.98
37881201--37881419	90	2.4	91	83	8	277	37	22	8	31	1.84
37881489--37881523	18	1.9	18	88	0	52	57	0	0	42	0.99
37881728--37881784	20	2.9	20	74	12	55	28	8	5	57	1.50
37881786--37881864	19	4.2	19	70	16	65	32	5	1	60	1.26
37881808--37881834	10	2.7	10	100	0	54	29	7	0	62	1.22
37881795--37881905	19	5.8	19	72	13	84	27	6	1	64	1.27
37881900--37881962	29	2.3	27	83	10	74	36	1	3	58	1.23
37888565--37888605	15	2.8	15	81	3	57	53	0	7	39	1.29
37888907--37888957	24	2.2	24	82	3	59	43	5	1	49	1.38
37909157--37909657	176	2.8	176	83	7	586	25	14	20	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37911844--37912719	132	6.9	123	84	5	843	16	28	26	27	1.97
37911966--37912721	132	5.9	132	86	5	924	16	28	26	28	1.97
37911838--37912718	378	2.3	380	82	6	1030	16	28	27	27	1.97
37912255--37912721	252	1.9	246	84	4	623	16	30	26	26	1.97
37917840--37918036	85	2.3	86	81	10	222	38	16	7	37	1.77
37918014--37918061	25	2.0	23	88	11	71	20	8	6	64	1.43
37918204--37918318	9	11.8	9	70	18	79	63	0	1	33	1.11
37918206--37918319	10	11.5	10	71	15	76	64	0	1	33	1.10
37918205--37918318	19	5.8	19	69	18	72	63	0	1	34	1.11
37918206--37918280	30	2.5	30	86	6	107	65	0	0	34	0.93
37918255--37918282	12	2.3	12	100	0	56	78	0	0	21	0.75
37918225--37918297	31	2.3	31	83	6	85	65	0	2	31	1.06
37918204--37918339	50	2.8	48	78	12	150	66	0	1	31	1.06
37918573--37918605	16	2.0	17	88	5	50	33	3	0	63	1.10
37918681--37918886	88	2.4	87	85	8	269	40	9	15	34	1.80
37918681--37918926	88	2.8	86	80	9	259	36	8	17	37	1.80
37919306--37919343	5	7.8	5	94	2	60	13	42	0	44	1.43
37919408--37919437	13	2.3	13	94	0	51	0	33	0	66	0.92
37923686--37923714	6	4.8	6	100	0	58	0	48	0	51	1.00
37924024--37924067	14	2.8	16	80	16	56	52	0	0	47	1.00
37926179--37926208	15	1.9	16	93	6	53	66	10	0	23	1.21
37930998--37931056	23	2.6	23	82	12	61	27	1	3	67	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37931330--37931378	20	2.5	18	78	18	53	53	0	0	46	1.00
37931499--37931572	30	2.5	30	91	2	123	54	0	1	44	1.08
37932463--37932515	11	4.9	11	74	21	58	50	0	0	49	1.00
37932446--37932515	32	2.3	31	92	5	115	50	0	0	50	1.00
37932960--37933018	23	2.6	23	86	0	55	11	20	20	47	1.81
37935705--37935758	21	2.4	21	87	9	72	48	3	9	38	1.53
37936406--37936444	18	2.1	19	85	4	53	64	2	0	33	1.08
37939196--37939254	13	4.6	13	80	16	61	38	15	3	42	1.63
37939422--37939460	15	2.6	14	84	11	51	17	7	7	66	1.40
37941516--37941733	109	2.0	109	96	0	400	23	10	21	44	1.82
37946562--37946922	157	2.3	157	85	3	483	39	18	12	29	1.88
37949776--37949812	19	2.0	20	89	10	60	37	5	0	56	1.22
37950713--37950797	29	2.9	29	76	15	93	50	3	1	44	1.26
37956998--37957048	14	3.6	14	86	0	66	35	1	13	49	1.54
37956995--37957051	18	3.2	18	92	0	96	38	1	12	47	1.51
37959328--37959698	199	1.9	199	93	1	645	29	21	14	34	1.93
37962126--37962241	56	2.1	55	80	7	128	35	5	3	56	1.39
37985740--37985773	18	1.9	17	88	5	50	35	0	0	64	0.94
37995582--37995630	24	2.0	25	88	11	75	63	0	0	36	0.95
37995582--37995626	22	2.0	23	86	8	65	62	0	0	37	0.96
37995595--37995641	13	3.4	13	76	23	51	65	0	0	34	0.93
37997057--37997092	19	2.0	17	89	10	54	61	0	2	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38000078--38000110	13	2.5	13	90	9	50	36	0	6	57	1.23
38003146--38003172	2	13.5	2	100	0	54	48	0	0	51	1.00
38005222--38005252	2	15.5	2	100	0	62	48	0	0	51	1.00
38005716--38005756	2	20.5	2	94	0	73	51	2	0	46	1.14
38006393--38006444	24	2.2	24	86	6	70	30	7	3	57	1.45
38018008--38018477	239	2.0	239	96	0	861	33	11	22	33	1.90
38018670--38018713	15	2.7	17	79	10	56	18	22	0	59	1.38
38018840--38018913	37	2.0	37	100	0	148	40	10	24	24	1.87
38019817--38020034	112	2.0	111	94	0	382	39	11	5	43	1.64
38025879--38026294	206	2.0	212	85	5	567	29	15	24	31	1.95
38035643--38035684	12	3.3	13	80	16	52	47	0	0	52	1.00
38047194--38047220	1	27.0	1	100	0	54	0	0	100	0	0.00
38048844--38048962	60	2.0	59	83	6	150	35	17	10	36	1.85
38049762--38049822	24	2.5	24	79	10	63	36	3	4	55	1.38
38049804--38049842	20	2.0	20	84	0	51	35	5	2	56	1.35
38056324--38056361	2	19.0	2	100	0	76	50	0	0	50	1.00
38057074--38058044	3	324.0	3	90	0	1361	33	0	6	60	1.22
38060625--38060649	12	2.1	12	100	0	50	52	16	8	24	1.70
38079102--38079165	2	32.0	2	100	0	128	50	0	0	50	1.00
38090698--38090751	20	2.8	20	71	15	51	40	0	0	59	0.98
38091077--38091116	21	1.9	21	84	0	53	60	12	2	25	1.45
38100915--38101061	74	1.9	77	91	4	246	42	7	4	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38101010--38101036	13	2.1	13	100	0	54	59	0	0	40	0.98
38107715--38107773	16	3.8	16	72	14	52	47	1	0	50	1.11
38108327--38108378	25	2.1	25	85	0	68	32	5	13	48	1.66
38108879--38108972	45	2.1	45	86	4	127	45	20	6	27	1.75
38111807--38111884	38	2.1	38	100	0	156	50	21	5	23	1.69
38112613--38112638	7	3.7	7	100	0	52	30	0	0	69	0.89
38113527--38113570	17	2.6	17	81	0	52	31	27	2	38	1.69
38117298--38117341	19	2.2	20	84	8	54	61	2	0	36	1.09
38119184--38119226	20	2.1	21	91	8	72	62	0	4	32	1.15
38123799--38123999	101	2.0	101	91	0	321	37	10	17	34	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125