genome.fa.s6.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  36  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10497223--10497309	40	2.2	40	81	8	97	33	20	31	14	1.93
10499702--10499746	22	2.0	23	86	4	65	42	31	0	26	1.56
10500777--10500838	27	2.3	27	100	0	124	45	6	32	16	1.72
10501316--10501394	29	2.7	29	80	3	79	36	24	12	26	1.91
10501427--10501480	28	1.9	28	88	0	81	42	29	9	18	1.81
10509006--10509045	21	1.9	22	90	10	66	25	5	30	40	1.77
10526607--10526659	20	2.6	21	82	11	65	30	28	13	28	1.94
10527371--10527609	52	4.6	52	89	0	343	33	22	15	28	1.95
10531720--10531813	46	2.0	46	97	0	179	32	26	17	23	1.96
10532473--10532659	52	3.6	52	89	1	268	32	25	14	27	1.95
10538446--10538537	46	2.0	45	85	2	121	16	13	23	46	1.82
10539426--10539488	23	2.7	23	87	0	90	14	15	25	44	1.84
10542751--10542800	12	4.2	12	80	10	57	2	34	0	64	1.05
10562185--10562309	20	6.3	20	72	10	78	36	19	33	11	1.87
10593284--10593334	22	2.3	22	83	10	59	49	3	7	39	1.51
10593291--10593334	22	1.9	24	86	9	65	45	4	9	40	1.56
10602206--10602236	10	3.2	10	90	9	55	22	19	9	48	1.78
10622176--10622224	21	2.3	21	85	0	62	34	10	24	30	1.89
10625637--10625691	14	3.9	14	81	11	58	23	12	5	58	1.55
10629793--10629827	17	2.0	18	88	5	54	54	2	17	25	1.57
10635022--10635140	58	2.1	56	81	10	134	44	5	20	29	1.75
10639247--10639279	16	2.0	16	94	5	57	72	3	0	24	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10642682--10642765	42	2.0	42	95	0	150	42	15	10	30	1.81
10644160--10644196	17	2.1	19	90	10	60	0	27	2	70	1.01
10650433--10650465	15	2.1	16	88	5	50	24	0	15	60	1.35
10660873--10660992	46	2.6	46	92	1	188	41	17	15	25	1.89
10661577--10661610	18	1.9	18	88	5	52	17	26	5	50	1.69
10662570--10662787	36	6.1	36	84	1	294	27	11	25	35	1.90
10662570--10662787	107	2.0	108	85	0	294	27	11	25	35	1.90
10663191--10663527	23	14.7	23	87	1	487	35	4	15	45	1.65
10671060--10671107	18	2.7	18	90	0	78	50	0	41	8	1.33
10681286--10681314	3	9.7	3	100	0	58	0	31	0	68	0.89
10690404--10690442	21	1.9	21	89	5	62	41	15	17	25	1.89
10693756--10693798	17	2.5	17	80	0	50	23	16	11	48	1.78
10697349--10698926	780	2.0	780	99	0	3120	30	16	16	36	1.92
10713407--10713457	6	9.2	6	93	6	74	86	0	13	0	0.58
10720296--10720325	14	2.1	14	93	0	51	40	26	16	16	1.90
10726427--10726468	17	2.5	17	81	11	52	14	14	14	57	1.66
10727055--10727090	17	2.1	17	89	5	54	83	0	13	2	0.76
10742126--10742167	22	1.9	23	90	9	70	54	2	19	23	1.55
10742249--10742308	22	2.8	21	80	9	59	75	5	1	18	1.07
10752448--10752492	21	2.0	23	83	8	58	62	17	4	15	1.49
10754235--10754279	22	2.1	22	87	4	65	15	4	13	66	1.39
10772566--10772638	31	2.4	31	93	4	121	30	27	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10773564--10773611	25	1.9	25	100	0	96	20	25	33	20	1.97
10776054--10776090	17	2.1	18	85	14	51	13	10	5	70	1.32
10782750--10782787	13	2.7	15	88	8	53	50	10	2	36	1.51
10789581--10789721	50	2.8	50	89	0	219	32	19	31	16	1.94
10789971--10790465	39	12.7	39	74	0	299	22	29	21	26	1.99
10789971--10790510	78	6.9	78	81	1	436	22	29	21	25	1.99
10790010--10790489	156	3.1	155	83	3	536	22	29	21	26	1.99
10795302--10795333	17	1.9	17	93	6	57	12	12	15	59	1.61
10809857--10809901	21	2.3	19	80	7	54	22	11	13	53	1.71
10817454--10817492	19	2.1	19	90	0	60	51	17	15	15	1.77
10817597--10817634	20	1.9	20	84	10	51	7	7	44	39	1.63
10829389--10829506	59	2.0	59	96	0	218	40	23	13	22	1.89
10832637--10832740	55	1.9	55	91	0	172	41	19	17	22	1.90
10836669--10836766	30	3.3	29	85	7	126	48	3	8	39	1.48
10837145--10837232	24	3.8	23	75	14	74	48	1	1	48	1.16
10837240--10837269	14	2.1	14	93	0	51	40	0	10	50	1.36
10839469--10839507	17	2.2	18	90	4	62	15	17	12	53	1.72
10840107--10840147	10	3.9	10	84	12	55	73	0	26	0	0.84
10851803--10851844	18	2.3	18	80	19	52	42	19	19	19	1.89
10883622--10883669	24	2.0	24	100	0	96	50	16	16	16	1.79
10888547--10889676	565	2.0	565	97	0	2134	35	11	21	30	1.89
10890132--10890166	13	2.7	13	95	0	61	74	11	0	14	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10890132--10890166	7	5.3	7	86	13	56	74	11	0	14	1.08
10897079--10897374	53	5.6	53	87	2	409	33	21	16	28	1.95
10897079--10897371	103	2.8	104	87	3	408	33	21	17	27	1.95
10909761--10909805	22	2.0	22	87	8	65	55	4	33	6	1.46
10909914--10909952	17	2.2	18	90	4	62	15	17	15	51	1.77
10916743--10917131	30	13.3	29	76	10	258	35	3	27	34	1.73
10916748--10917023	58	4.7	58	79	8	193	35	2	28	33	1.71
10919519--10919581	24	2.7	24	82	2	83	46	14	15	23	1.83
10920031--10920192	71	2.3	71	85	0	216	30	14	25	28	1.95
10924174--10924212	2	20.0	2	94	5	71	48	0	0	51	1.00
10924034--10924371	175	1.9	176	97	0	642	40	7	15	35	1.76
10924347--10924371	2	12.5	2	100	0	50	52	0	0	48	1.00
10927492--10927719	20	11.4	20	73	2	145	14	31	17	36	1.90
10927478--10927718	40	6.0	40	75	0	187	14	31	17	36	1.90
10931925--10931977	23	2.2	25	83	9	67	60	7	3	28	1.41
10932361--10932413	23	2.4	23	84	12	67	77	7	1	13	1.06
10932360--10932405	19	2.4	19	82	7	58	76	8	2	13	1.11
10933250--10933368	45	2.6	46	82	4	134	42	17	18	21	1.89
10935412--10935621	20	10.5	20	76	4	154	13	31	20	35	1.91
10935414--10935622	40	5.2	40	77	12	171	13	31	19	35	1.90
10935412--10935622	60	3.5	58	79	3	208	13	31	19	35	1.91
10938067--10938093	13	2.1	13	100	0	54	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10943331--10943628	24	12.4	24	77	2	303	37	14	25	22	1.92
10943344--10943625	96	2.9	96	82	1	350	37	14	25	22	1.92
10944081--10944239	71	2.2	71	83	4	187	30	15	25	28	1.96
10945740--10945832	36	2.6	36	94	0	168	23	30	12	33	1.92
10951810--10951864	28	2.0	28	89	7	85	20	1	23	54	1.54
10955364--10955414	14	3.4	14	71	23	50	52	7	3	35	1.49
10955375--10955425	14	3.4	14	71	23	50	49	9	5	35	1.60
10955445--10955553	30	3.6	31	68	13	93	43	0	1	55	1.10
10955463--10955579	58	2.0	57	88	4	173	44	0	1	52	1.16
10959055--10959119	13	5.0	13	77	7	60	36	6	18	38	1.76
10965584--10965621	17	2.2	18	86	13	53	60	10	13	15	1.59
10966015--10966066	21	2.5	21	80	0	59	0	32	1	65	1.04
10978381--10978446	31	2.1	32	82	2	80	18	15	9	57	1.63
10997898--10997939	17	2.5	17	92	7	68	11	14	0	73	1.09
10997930--10997966	17	2.2	16	90	4	56	2	10	2	83	0.84
10998892--10998924	17	1.9	17	93	0	57	75	0	3	21	0.93
10998947--10998972	11	2.4	11	100	0	52	15	7	0	76	0.99
10998937--10998981	19	2.4	19	88	0	63	15	4	2	77	1.02
11002187--11002232	24	1.9	23	86	8	65	56	6	4	32	1.45
11002678--11002702	13	1.9	13	100	0	50	56	0	8	36	1.29
11019901--11020137	52	4.5	51	83	4	262	26	16	22	35	1.94
11026804--11027027	52	4.3	51	78	8	209	25	15	22	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11026791--11027027	104	2.3	103	77	5	262	25	16	21	35	1.94
11027731--11027770	21	1.9	21	94	0	71	27	17	22	32	1.96
11027949--11028015	30	2.2	30	97	2	125	46	0	20	32	1.51
11031610--11031664	27	2.0	27	96	0	101	32	20	3	43	1.69
11031673--11031865	42	4.5	43	77	7	171	24	24	11	38	1.89
11031683--11031870	84	2.2	86	78	11	199	25	25	11	38	1.88
11036124--11036188	26	2.5	26	80	5	78	23	21	24	30	1.99
11041041--11041159	21	5.7	21	87	0	148	29	17	33	19	1.95
11047008--11047119	28	3.9	28	73	17	72	39	4	1	54	1.31
11047093--11047135	21	2.1	20	86	4	59	46	2	2	48	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125