genome.fa.s6.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  19  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5932949--5933021	20	3.4	19	71	20	56	69	1	1	27	1.04
5937300--5937831	122	4.3	122	81	5	527	23	22	17	37	1.94
5937991--5938311	49	6.5	49	77	1	293	19	30	15	34	1.92
5937989--5938310	148	2.2	148	82	2	387	18	30	15	34	1.93
5939266--5939342	6	11.8	6	77	22	68	2	16	0	80	0.82
5939281--5939355	39	1.9	39	83	5	98	2	16	0	81	0.80
5939266--5939357	32	2.8	31	84	11	105	4	15	0	80	0.86
5939264--5939357	7	13.4	7	79	10	86	4	15	0	79	0.88
5945589--5945650	20	3.3	20	70	25	71	3	9	12	74	1.19
5946470--5946526	25	2.3	23	88	8	78	43	0	3	52	1.18
5946501--5946562	28	2.2	28	91	2	97	41	0	4	53	1.22
5948042--5948090	13	3.8	13	81	10	55	40	16	0	42	1.48
5948681--5948706	13	2.0	13	100	0	52	23	15	7	53	1.67
5950083--5950155	31	2.4	30	79	4	83	36	8	13	41	1.75
5953264--5953331	30	2.3	30	85	10	86	52	5	0	41	1.25
5953268--5953368	31	3.0	34	80	8	100	51	4	1	41	1.35
5953295--5953368	36	2.1	35	85	5	96	45	4	2	47	1.35
5954144--5954190	24	2.0	24	100	0	94	44	21	17	17	1.86
5956658--5956712	7	7.7	7	75	18	51	32	0	25	41	1.56
5956658--5956712	15	3.9	14	77	17	51	32	0	25	41	1.56
5956960--5957050	45	2.0	45	97	0	173	18	18	30	31	1.95
5957113--5957159	6	7.8	6	95	0	85	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5959043--5959122	4	19.5	4	80	14	74	1	31	0	67	0.99
5959024--5959103	14	5.9	14	84	11	89	0	36	0	63	0.94
5964194--5964220	4	6.8	4	100	0	54	25	0	74	0	0.83
5968091--5968122	16	1.9	17	93	6	57	75	0	18	6	1.01
5969466--5969503	9	4.2	9	80	12	51	50	0	0	50	1.00
5973275--5973307	2	16.5	2	100	0	66	51	0	0	48	1.00
5973473--5973514	22	1.9	22	90	0	66	38	2	0	59	1.10
5975597--5975656	25	2.4	25	77	8	68	41	5	6	46	1.52
5975693--5975722	14	2.1	14	100	0	60	13	16	13	56	1.67
5981685--5981717	14	2.4	14	90	5	50	24	0	0	75	0.80
5984384--5984426	17	2.5	18	81	11	54	46	11	0	41	1.40
5984934--5984966	16	2.0	17	94	5	59	51	0	6	42	1.26
5990112--5990138	6	4.5	6	100	0	54	33	0	51	14	1.43
5993445--5993728	120	2.4	122	80	9	334	28	19	15	35	1.93
5993438--5993728	62	4.8	62	79	9	280	30	18	15	35	1.93
5994550--5994641	30	3.1	30	82	6	89	63	5	5	26	1.38
5997052--5997396	83	4.1	83	90	3	507	51	4	6	37	1.48
5997162--5997310	45	3.4	45	64	21	120	51	5	6	36	1.49
5997527--5997574	12	3.7	12	77	20	51	41	10	0	47	1.37
5997537--5997571	17	2.1	16	89	5	52	48	8	0	42	1.33
5997527--5997584	28	2.1	28	83	0	71	43	12	0	44	1.41
5999724--5999769	19	2.6	19	80	19	55	60	8	0	30	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6000409--6000631	61	3.8	59	79	6	265	33	13	21	32	1.91
6000558--6000725	86	2.0	84	87	3	239	38	11	17	33	1.85
6002192--6002226	16	2.2	16	94	0	61	42	11	8	37	1.72
6004293--6004336	21	2.1	21	100	0	88	43	13	0	43	1.44
6013244--6013277	6	5.7	6	96	0	59	20	0	47	32	1.51
6027289--6027331	2	21.5	2	100	0	86	51	0	0	48	1.00
6028418--6028463	16	2.9	16	90	0	74	41	4	26	28	1.74
6028619--6028778	58	2.8	57	80	10	184	52	1	1	43	1.22
6028683--6028761	29	2.8	29	75	7	90	49	3	0	46	1.19
6032669--6032844	48	3.8	44	78	10	156	43	21	24	11	1.85
6032668--6032844	23	7.6	23	75	10	144	43	20	24	11	1.85
6032668--6032844	71	2.5	71	83	4	198	43	20	24	11	1.85
6034929--6034980	24	2.1	25	82	3	61	53	1	0	44	1.11
6036153--6036250	12	7.8	12	73	8	52	70	18	3	8	1.25
6036171--6036212	15	2.9	15	89	3	59	73	16	2	7	1.15
6036190--6036250	24	2.5	24	78	0	68	70	18	3	8	1.26
6036229--6036271	20	2.2	20	87	4	61	69	18	4	6	1.29
6036236--6036321	29	2.9	29	79	5	84	69	16	3	10	1.30
6039315--6039348	18	1.9	17	88	5	50	55	0	2	41	1.15
6046702--6046731	15	2.0	15	93	0	51	73	3	0	23	0.98
6047190--6047238	25	2.0	25	84	8	64	26	6	14	53	1.64
6052839--6052902	33	1.9	33	90	0	101	45	3	9	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6072583--6072648	33	2.0	33	85	5	89	25	16	6	51	1.67
6074394--6074456	12	5.4	12	82	3	67	25	17	14	42	1.87
6075652--6075694	22	1.9	23	85	4	61	55	4	0	39	1.20
6079316--6079356	19	2.2	19	86	0	55	12	0	12	75	1.05
6079371--6079428	24	2.5	24	91	2	91	39	20	18	20	1.92
6079413--6079463	11	4.5	11	76	13	59	41	19	19	19	1.91
6079397--6079463	34	2.0	34	90	0	107	40	17	19	22	1.92
6081638--6081667	3	10.0	3	92	0	51	30	33	3	33	1.74
6086674--6086730	29	1.9	30	89	3	89	38	8	8	43	1.67
6090950--6090985	18	2.0	18	88	0	54	30	0	30	38	1.58
6094282--6094448	89	1.9	89	80	0	199	23	17	19	38	1.93
6095984--6096125	37	3.9	36	73	12	110	52	10	16	20	1.73
6098283--6098341	19	3.0	20	90	9	95	49	0	0	50	1.00
6098307--6098382	31	2.7	29	83	16	99	50	0	1	48	1.09
6098307--6098382	29	2.8	28	84	15	97	50	0	1	48	1.09
6099329--6099401	32	2.3	32	79	9	78	49	21	5	23	1.70
6100250--6100392	37	3.8	37	80	2	133	49	10	20	18	1.77
6103850--6103875	3	8.7	3	100	0	52	30	0	0	69	0.89
6110047--6110092	2	23.0	2	95	0	83	47	0	2	50	1.13
6110835--6110897	31	2.0	31	87	0	90	33	11	20	34	1.88
6117395--6117491	20	4.9	20	65	12	56	12	25	20	41	1.87
6117395--6117491	40	2.5	39	76	5	97	12	25	20	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6126795--6126835	3	13.3	3	89	5	64	31	4	0	63	1.15
6127975--6128011	3	12.3	3	94	0	65	64	2	0	32	1.07
6128660--6128705	24	1.9	24	90	0	74	47	17	10	23	1.79
6131784--6131817	6	5.7	6	92	0	59	0	32	29	38	1.58
6131778--6131817	18	2.2	18	86	0	53	2	32	25	40	1.69
6137586--6137632	4	11.8	4	82	8	60	2	27	0	70	0.99
6140336--6140421	28	3.1	28	82	9	81	34	0	10	54	1.35
6140370--6140421	26	2.0	26	84	0	68	32	0	7	59	1.26
6140589--6140646	16	3.7	16	88	4	91	22	0	22	55	1.44
6140590--6140646	7	7.2	8	77	18	66	22	0	22	54	1.45
6141651--6141683	16	2.0	17	88	5	50	0	39	0	60	0.97
6141906--6141943	16	2.4	16	91	4	60	13	10	13	63	1.53
6142501--6142540	18	2.2	18	86	0	53	52	5	12	30	1.60
6142736--6142791	25	2.2	27	78	18	75	73	7	0	19	1.06
6143041--6143087	24	2.0	23	87	4	67	0	31	0	68	0.90
6143231--6143288	26	2.2	27	87	3	82	15	36	13	34	1.87
6143231--6143299	27	2.6	26	83	2	84	14	36	14	34	1.87
6146363--6146392	2	15.0	2	100	0	60	50	0	0	50	1.00
6147268--6147360	39	2.4	40	87	7	129	53	1	0	45	1.07
6151687--6151732	24	1.9	24	86	8	67	54	6	4	34	1.46
6151944--6151991	24	2.0	24	91	0	78	22	22	6	47	1.73
6154605--6154640	13	2.8	13	91	8	56	0	8	0	91	0.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6154613--6154640	10	2.8	10	100	0	56	0	7	0	92	0.37
6154571--6154640	22	3.1	22	77	2	68	4	12	1	81	0.90
6155591--6155634	21	2.1	21	95	0	79	29	4	0	65	1.12
6157723--6157767	12	3.8	12	90	0	63	73	2	0	24	0.95
6157728--6157797	7	10.1	7	72	18	58	71	1	0	27	0.94
6157723--6157804	18	4.6	17	73	18	62	71	1	0	26	0.93
6169401--6169464	31	2.0	32	84	3	85	28	14	17	40	1.88
6170216--6170245	13	2.3	13	94	0	51	63	0	0	36	0.95
6171187--6171247	31	2.0	31	83	6	79	37	8	8	45	1.64
6182157--6182190	9	3.8	9	100	0	68	32	11	11	44	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125