genome.fa.s6.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  72  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22612782--22612861	42	1.9	42	92	0	133	42	15	11	31	1.81
22613271--22613327	18	3.2	17	72	18	53	57	10	1	29	1.42
22613356--22613421	8	7.6	8	71	15	51	74	1	4	19	1.07
22613348--22613395	16	2.9	16	81	12	62	72	0	4	22	1.01
22614618--22614645	4	7.0	4	100	0	56	75	0	0	25	0.81
22638057--22638117	17	3.5	17	81	2	68	47	13	19	19	1.82
22638546--22638592	12	3.8	12	81	13	60	0	38	0	61	0.96
22638545--22638599	24	2.3	24	81	6	67	3	36	0	60	1.15
22640176--22640214	21	1.9	21	94	5	71	43	15	15	25	1.86
22652913--22652959	11	4.1	12	88	5	71	72	0	2	25	0.96
22654344--22654446	40	2.6	40	84	3	145	41	18	18	21	1.90
22654442--22654670	41	5.6	40	82	9	239	40	14	24	20	1.90
22654448--22654673	82	2.7	81	83	8	269	39	15	24	20	1.91
22654419--22654698	123	2.3	123	82	7	354	40	15	23	20	1.90
22665335--22665405	21	3.4	21	78	0	70	46	15	8	29	1.75
22669160--22669199	20	1.9	22	90	10	66	17	0	2	80	0.83
22669154--22669198	16	3.1	15	81	15	58	17	0	2	80	0.82
22669994--22670169	92	1.9	93	85	1	246	32	15	22	28	1.95
22672025--22672064	19	2.2	18	95	4	71	60	12	15	12	1.60
22673625--22673970	52	6.7	52	94	0	575	34	22	13	28	1.92
22678261--22678298	15	2.7	14	84	11	51	68	5	10	15	1.36
22684807--22684847	12	3.2	13	82	10	57	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22684799--22684847	22	2.3	22	86	6	66	81	0	16	2	0.78
22684799--22684847	10	4.6	10	80	12	53	81	0	16	2	0.78
22690093--22690131	16	2.3	18	86	8	55	58	7	12	20	1.58
22690679--22690729	3	17.3	3	89	4	77	66	1	1	29	1.13
22691802--22691863	20	3.0	20	83	2	70	37	20	22	19	1.95
22695737--22695806	24	2.9	24	93	0	113	30	14	15	40	1.87
22697247--22697300	19	2.8	20	78	18	62	35	0	5	59	1.21
22697259--22697298	18	2.2	17	86	8	53	35	0	5	60	1.19
22697251--22697306	19	2.9	19	75	2	58	32	0	5	62	1.18
22700860--22700987	63	2.1	63	82	2	152	28	13	14	43	1.83
22701443--22701577	59	2.3	59	89	0	198	41	14	14	30	1.85
22703155--22703222	33	2.0	34	88	2	102	27	7	17	47	1.74
22707991--22708059	24	2.9	24	80	0	84	20	33	0	46	1.51
22716357--22716716	52	6.7	52	76	9	335	28	13	22	35	1.92
22716377--22716546	58	3.0	58	87	6	253	29	12	21	36	1.91
22716377--22716710	110	3.0	110	85	2	402	28	13	22	35	1.92
22716520--22716776	112	2.3	112	90	1	399	28	14	23	33	1.94
22720449--22720505	3	17.7	3	81	16	62	28	1	3	66	1.18
22720501--22720529	15	1.9	15	100	0	58	6	0	24	68	1.13
22720507--22720532	12	2.2	12	100	0	52	7	0	23	69	1.14
22722020--22722074	25	2.3	23	84	12	67	16	3	7	72	1.21
22722039--22722094	6	9.2	6	77	11	60	16	1	7	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22727698--22727744	19	2.4	20	79	13	53	61	29	2	6	1.32
22727698--22727739	18	2.3	19	83	4	50	64	28	2	4	1.26
22728050--22728089	20	2.0	20	85	9	55	37	17	10	35	1.83
22728726--22728819	36	2.6	36	87	0	134	22	28	22	26	1.99
22732035--22732113	35	2.3	35	90	0	131	24	27	21	26	1.99
22734230--22734298	29	2.3	29	80	5	75	39	18	8	33	1.82
22735546--22735627	27	3.0	28	75	19	66	64	0	1	34	1.01
22735564--22735635	27	2.7	25	73	12	63	69	0	1	29	0.97
22736775--22736799	3	8.3	3	100	0	50	0	36	0	64	0.94
22737949--22738059	56	2.0	56	92	0	186	25	29	18	26	1.98
22738256--22738308	21	2.5	21	73	14	54	28	18	18	33	1.95
22740250--22740348	43	2.3	43	83	10	116	56	3	3	37	1.30
22740532--22740605	35	2.1	35	84	0	94	32	21	9	36	1.86
22741304--22741365	31	1.9	33	83	6	83	64	3	0	32	1.09
22746090--22746247	29	5.5	28	71	13	99	39	4	25	30	1.75
22746090--22746276	58	3.2	57	85	4	234	40	3	25	31	1.73
22746177--22746391	86	2.5	88	75	11	219	42	2	22	32	1.68
22746090--22746333	57	4.2	58	82	5	248	41	4	24	30	1.73
22746090--22746333	115	2.1	116	81	7	275	41	4	24	30	1.73
22746321--22746464	30	4.8	30	75	11	127	43	4	16	35	1.70
22746177--22746461	29	9.7	30	70	16	161	42	3	21	32	1.71
22746288--22746466	60	3.0	59	84	3	216	41	5	20	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22746758--22746826	32	2.2	31	84	7	86	55	5	13	26	1.60
22748355--22748424	17	4.1	17	76	7	70	57	10	0	32	1.32
22748349--22748420	34	2.1	35	84	7	103	54	8	0	37	1.31
22748697--22748817	61	2.0	61	96	0	224	28	24	14	31	1.95
22764761--22764789	15	1.9	15	100	0	58	27	27	13	31	1.94
22771536--22771566	15	2.1	15	93	0	53	16	12	35	35	1.87
22777909--22777948	21	1.9	21	89	0	62	52	2	7	37	1.43
22778013--22778070	28	2.1	28	96	0	107	46	13	6	32	1.70
22780970--22781001	16	2.0	16	100	0	64	37	6	6	50	1.53
22782138--22782179	21	2.0	21	86	4	59	50	0	16	33	1.46
22783245--22783348	36	2.9	36	86	0	136	33	15	25	25	1.95
22784037--22784086	21	2.4	21	83	6	66	36	14	20	30	1.91
22789709--22789796	36	2.4	36	78	0	95	28	18	27	26	1.98
22789729--22789809	36	2.2	36	84	0	99	33	13	29	23	1.93
22791261--22791320	28	2.1	29	84	9	79	31	21	13	33	1.92
22796697--22796745	21	2.3	21	80	13	57	61	6	16	16	1.53
22805076--22805119	16	2.6	17	85	3	54	18	11	0	70	1.16
22810210--22810259	6	8.5	6	78	12	59	0	20	0	80	0.72
22810212--22810255	23	2.0	22	90	4	70	0	20	0	79	0.73
22812933--22812981	3	16.0	3	87	4	71	2	28	0	69	1.00
22821802--22821915	51	2.2	51	93	0	192	32	13	23	30	1.93
22823356--22823386	16	1.9	16	93	0	53	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22831136--22831185	26	1.9	26	88	8	75	68	4	4	24	1.24
22834028--22834091	24	2.6	25	85	7	85	29	12	12	45	1.79
22834049--22834107	26	2.3	26	85	8	77	32	13	15	38	1.86
22856915--22856963	24	2.0	24	96	0	89	16	22	4	57	1.56
22856969--22857089	45	2.7	44	77	8	102	26	19	16	37	1.93
22857016--22857179	45	3.6	45	82	9	192	27	17	14	40	1.88
22857016--22857179	90	1.8	90	85	7	235	27	17	14	40	1.88
22857016--22857232	90	2.4	88	78	11	217	26	17	14	40	1.89
22857016--22857238	45	5.0	44	76	10	166	27	17	14	39	1.89
22857321--22857361	16	2.5	17	80	11	59	51	14	4	29	1.63
22857681--22857745	20	3.2	20	77	12	62	21	16	21	40	1.92
22857681--22857737	13	4.3	13	80	4	60	21	15	22	40	1.91
22861869--22861948	40	2.0	40	95	0	142	21	7	25	46	1.77
22864858--22864961	27	3.9	26	82	10	106	19	15	24	41	1.89
22864858--22864957	13	7.5	13	74	13	71	20	15	25	40	1.90
22866124--22866154	12	2.6	12	89	0	53	38	0	0	61	0.96
22874590--22874864	137	2.0	137	94	0	487	36	21	10	32	1.87
22875499--22875853	23	15.4	23	88	0	521	33	4	14	47	1.65
22877441--22877483	6	7.2	6	89	0	59	20	30	0	48	1.50
22886996--22887231	82	2.9	81	86	2	301	32	21	19	26	1.97
22888982--22889120	74	1.9	75	86	4	201	19	21	24	34	1.96
22893764--22893803	13	3.2	12	82	10	53	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22893768--22893805	20	1.9	19	94	5	67	0	18	0	81	0.69
22893953--22893978	13	2.0	13	100	0	52	38	15	7	38	1.76
22894266--22894601	167	2.0	167	100	0	672	41	18	14	25	1.88
22895064--22895112	18	2.7	18	75	12	55	0	38	6	55	1.25
22904402--22904469	36	1.9	35	81	3	82	63	8	11	16	1.52
22905534--22905576	21	2.1	21	86	4	61	9	48	2	39	1.48
22908217--22908247	16	1.9	16	93	0	53	61	0	16	22	1.34
22910847--22910922	21	3.6	22	75	18	72	30	23	17	28	1.97
22923621--22923758	25	5.5	25	78	2	143	26	18	24	31	1.97
22923616--22923758	50	2.8	49	85	3	187	25	18	25	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125