genome.fa.s6.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  124  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39213505--39213862	175	2.1	171	86	4	497	22	7	18	50	1.72
39218272--39218463	92	2.1	92	97	0	357	38	16	9	35	1.82
39219605--39219648	3	14.7	3	100	0	88	34	0	0	65	0.93
39221879--39221998	51	2.4	51	79	0	141	35	6	22	35	1.81
39225509--39225756	132	1.9	134	82	5	315	50	22	9	18	1.75
39225891--39226152	125	2.1	126	86	4	359	44	21	14	18	1.86
39227602--39227631	16	1.9	16	93	6	53	33	3	6	56	1.42
39230570--39230609	18	2.2	18	100	0	80	32	10	0	57	1.32
39238858--39238927	29	2.3	29	85	4	86	34	7	12	45	1.70
39238879--39238937	29	2.0	30	90	3	93	28	3	13	54	1.55
39244412--39244571	29	5.5	28	68	17	101	37	5	25	31	1.78
39244375--39244836	59	7.9	59	89	0	649	34	6	27	31	1.81
39244816--39244895	30	2.7	30	90	0	124	31	6	25	37	1.81
39244993--39245306	162	1.9	162	88	2	470	45	12	15	26	1.81
39246883--39246975	17	5.5	16	76	17	73	50	1	3	45	1.25
39246900--39246972	6	12.7	6	73	15	57	52	1	4	42	1.29
39246899--39246975	11	6.8	11	76	10	75	50	1	3	44	1.28
39247111--39247173	32	2.0	32	83	0	81	42	6	9	41	1.63
39259345--39259426	31	2.8	29	75	17	87	32	10	14	41	1.81
39261401--39262018	204	3.0	204	96	0	1137	28	18	19	33	1.95
39262374--39262992	313	2.0	310	91	2	1008	30	19	19	30	1.97
39268051--39268110	22	2.6	23	76	5	68	78	5	1	15	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39270292--39270324	16	2.0	17	94	5	59	42	0	0	57	0.98
39270316--39270343	13	2.2	13	100	0	56	50	0	0	50	1.00
39273049--39273098	25	2.0	25	96	0	91	26	20	6	48	1.72
39273133--39273193	27	2.3	27	94	0	104	21	39	24	14	1.91
39273393--39273433	20	1.9	23	85	14	61	31	7	0	60	1.24
39274368--39274405	15	2.5	16	87	8	53	60	5	0	34	1.19
39275075--39275124	22	2.2	24	82	7	59	44	0	2	54	1.11
39282048--39282091	22	1.9	24	90	9	74	40	6	4	47	1.50
39282638--39282680	18	2.4	18	80	7	52	51	0	2	46	1.13
39283613--39283665	27	2.0	27	96	0	97	50	11	7	30	1.65
39285177--39285206	2	15.0	2	100	0	60	50	0	0	50	1.00
39288700--39288806	36	3.1	36	63	26	88	29	7	28	34	1.84
39306008--39306040	11	3.0	11	100	0	66	54	9	18	18	1.69
39306258--39306296	21	1.9	20	84	5	51	38	0	25	35	1.56
39306345--39306398	20	2.7	20	100	0	108	37	0	0	62	0.95
39312934--39312975	23	1.9	23	90	9	70	30	2	2	64	1.19
39319205--39319238	17	2.0	17	88	0	50	14	17	8	58	1.61
39321100--39321141	21	2.0	22	90	4	68	54	2	0	42	1.13
39321649--39321764	58	2.0	58	83	3	144	44	18	1	35	1.60
39323095--39323170	39	1.9	38	84	10	100	44	5	2	47	1.39
39323095--39323183	39	2.3	38	82	7	99	42	4	4	48	1.43
39326188--39326245	31	1.9	30	85	3	80	48	8	0	43	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39329567--39329611	22	2.0	22	83	8	56	40	2	0	57	1.11
39329571--39329610	19	2.2	18	86	4	53	40	2	0	57	1.12
39329633--39329657	13	1.9	13	100	0	50	64	4	0	32	1.12
39342643--39342686	23	1.9	23	81	9	54	36	0	2	61	1.09
39342674--39342726	28	1.9	28	84	3	72	41	0	1	56	1.10
39344193--39344308	57	2.0	57	96	0	214	33	12	13	40	1.82
39348156--39348310	61	2.6	61	93	1	258	31	13	21	33	1.92
39355796--39355845	25	2.0	25	96	0	91	34	16	10	40	1.81
39356996--39357026	5	6.2	5	100	0	62	0	80	0	19	0.71
39377363--39377424	30	2.1	30	82	8	74	50	4	1	43	1.33
39381414--39381504	30	3.0	29	80	6	101	14	29	27	28	1.95
39386875--39386926	26	1.9	28	85	14	74	61	0	3	34	1.14
39394630--39394686	30	1.9	30	92	0	96	28	15	28	28	1.96
39399333--39399390	2	29.5	2	96	3	109	50	0	50	0	1.00
39402491--39402530	2	21.0	2	90	10	66	50	0	0	50	1.00
39408997--39409033	18	2.1	18	94	0	65	24	8	5	62	1.44
39411902--39411929	13	2.2	13	100	0	56	28	7	14	50	1.69
39414038--39414077	21	2.0	20	85	5	53	60	0	2	37	1.11
39418830--39418867	18	2.1	18	100	0	76	36	5	15	42	1.70
39420714--39420750	18	2.1	18	94	0	65	24	8	5	62	1.44
39423619--39423646	13	2.2	13	100	0	56	28	7	14	50	1.69
39425755--39425794	21	2.0	20	85	5	53	60	0	2	37	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39430548--39430585	18	2.1	18	100	0	76	36	5	15	42	1.70
39431358--39431467	55	2.0	55	100	0	220	38	5	25	30	1.79
39441037--39441276	119	2.0	120	93	0	410	45	10	13	29	1.78
39446133--39446201	24	2.8	24	80	10	70	42	2	1	53	1.24
39457246--39457302	24	2.3	24	82	17	64	29	3	7	59	1.40
39461847--39461873	5	5.4	5	100	0	54	40	0	0	59	0.98
39475953--39476017	34	1.9	34	90	6	105	18	30	3	47	1.64
39480033--39480090	28	2.1	28	100	0	116	36	12	20	31	1.89
39483647--39483678	16	2.0	16	93	0	55	34	6	34	25	1.81
39488995--39489033	20	2.0	20	85	10	53	33	10	7	48	1.66
39497163--39497227	24	2.8	24	88	6	89	29	9	20	41	1.83
39497169--39497238	23	3.0	23	81	6	61	35	8	17	38	1.80
39508577--39508651	16	4.5	17	71	17	52	56	4	1	38	1.27
39519649--39519714	23	3.0	23	70	16	59	40	16	13	28	1.87
39527945--39527982	19	2.0	20	84	5	51	44	2	0	52	1.14
39542714--39542766	20	2.5	20	84	6	61	32	3	5	58	1.39
39558743--39558822	39	2.1	38	81	13	92	23	2	7	66	1.30
39560654--39561038	191	2.0	193	94	1	675	39	18	17	25	1.91
39569165--39569193	15	1.9	15	100	0	58	0	48	10	41	1.37
39569712--39569761	23	2.2	23	88	0	73	28	8	6	58	1.51
39570849--39570873	12	2.1	12	100	0	50	84	0	8	8	0.79
39575146--39575206	27	2.2	27	85	8	79	24	11	36	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39575184--39575496	59	5.4	59	86	3	409	33	4	30	32	1.77
39575249--39575458	30	7.1	30	70	20	120	35	3	27	33	1.73
39575191--39575496	117	2.6	118	88	1	454	34	3	29	33	1.75
39575191--39575468	29	9.4	30	66	22	142	35	3	28	33	1.75
39575329--39575486	29	5.4	29	65	16	92	33	4	31	31	1.78
39576473--39576512	3	13.0	3	84	5	53	37	0	0	62	0.95
39576462--39576520	9	6.7	9	74	18	52	42	0	0	57	0.98
39577288--39577392	6	18.0	6	70	20	64	52	1	2	42	1.27
39577289--39577330	17	2.7	15	85	10	57	54	0	0	45	0.99
39577289--39577332	11	4.1	11	80	13	56	54	0	0	45	0.99
39577344--39577385	11	3.7	11	87	6	57	57	0	2	40	1.12
39578516--39578568	21	2.5	21	87	3	70	67	9	0	22	1.19
39581938--39581992	20	2.7	21	83	5	69	20	9	0	70	1.13
39585460--39585518	31	1.9	31	96	0	109	30	25	0	44	1.55
39588232--39588397	82	2.0	80	90	2	260	31	12	18	37	1.87
39589305--39589435	66	2.0	65	87	1	190	23	18	12	45	1.83
39589461--39589507	21	2.2	21	85	7	60	19	0	40	40	1.51
39589460--39589542	35	2.4	35	83	4	96	22	0	38	38	1.55
39589497--39589548	21	2.5	21	93	0	86	19	0	40	40	1.51
39591990--39592021	16	1.9	16	93	6	55	59	0	0	40	0.97
39591989--39592030	17	2.5	16	84	7	57	54	7	0	38	1.28
39592224--39592266	21	2.0	21	90	0	68	37	20	6	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39593979--39594033	23	2.3	24	75	12	60	27	10	1	60	1.41
39595718--39595757	15	2.9	14	89	10	64	57	0	17	25	1.40
39596482--39596724	126	1.9	126	94	0	432	34	7	21	35	1.83
39597710--39598051	170	2.0	171	92	1	569	35	8	12	43	1.73
39600991--39601267	115	2.4	115	87	1	385	53	6	9	30	1.59
39601474--39601666	21	9.0	21	78	13	83	2	12	48	35	1.55
39601506--39601636	14	9.4	14	91	0	136	0	16	49	33	1.51
39601507--39601608	7	14.6	7	91	0	132	0	20	47	31	1.57
39601605--39601727	7	17.7	7	75	11	65	5	1	51	41	1.35
39601570--39602670	14	78.9	14	86	4	801	7	5	47	38	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125