genome.fa.s6.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  96  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28850323--28850621	59	5.1	59	86	4	392	30	29	5	34	1.81
28850323--28850621	117	2.5	116	85	9	408	30	29	5	34	1.81
28850323--28850656	117	2.8	116	84	8	358	29	29	6	34	1.83
28862271--28862583	162	1.9	163	88	2	470	25	15	12	45	1.82
28862302--28862637	162	2.1	161	82	6	412	24	16	13	44	1.84
28862680--28862782	30	3.4	29	86	5	152	36	24	3	34	1.74
28862770--28863166	59	6.7	59	88	0	571	31	26	5	36	1.78
28868470--28868518	19	2.7	18	75	9	55	34	0	0	65	0.93
28884892--28884955	32	2.1	31	82	8	78	54	1	1	42	1.19
28893907--28894011	14	7.4	14	72	6	68	48	21	0	28	1.57
28893967--28894021	14	3.7	15	78	14	60	49	20	0	30	1.49
28893964--28894021	15	3.9	14	78	15	55	51	18	0	29	1.47
28895407--28895462	24	2.3	24	87	3	85	23	12	21	42	1.86
28895945--28895983	19	2.1	19	90	4	62	0	35	0	64	0.94
28897153--28897220	30	2.2	30	84	7	84	54	5	0	39	1.25
28897184--28897256	36	2.1	35	87	7	103	46	4	2	46	1.36
28898325--28898354	9	3.3	9	100	0	60	80	0	0	20	0.72
28899499--28899547	16	3.2	16	72	21	50	32	0	6	61	1.21
28900173--28900201	12	2.3	13	88	11	51	65	0	0	34	0.93
28904357--28904418	27	2.3	27	86	5	90	56	19	4	19	1.59
28911918--28911972	20	2.8	19	78	8	65	34	0	5	60	1.20
28913563--28913621	30	1.9	31	89	3	93	38	6	8	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28913833--28913908	30	2.5	30	79	14	77	59	1	3	35	1.24
28913862--28913907	10	4.7	10	74	15	51	58	2	2	36	1.22
28917927--28917980	22	2.4	23	79	17	60	50	0	0	50	1.00
28930450--28930501	27	1.9	27	100	0	104	28	15	15	40	1.88
28930453--28930516	27	2.5	26	85	11	73	29	15	15	39	1.89
28932581--28932640	18	3.3	18	72	25	63	25	6	28	40	1.80
28932599--28932670	21	3.8	19	71	21	53	29	5	27	37	1.79
28932557--28932666	36	3.1	35	85	5	148	27	9	27	36	1.87
28941274--28941328	26	2.3	22	75	21	65	60	12	3	23	1.49
28942335--28942364	14	2.2	13	94	5	51	80	0	20	0	0.72
28959559--28959616	19	3.2	18	79	16	57	53	3	3	39	1.35
28964567--28964608	22	1.9	22	85	0	57	50	4	2	42	1.36
28966588--28966635	18	2.5	19	80	10	53	41	4	2	52	1.32
28968299--28968338	20	2.0	20	85	9	55	32	0	0	67	0.91
28968444--28968502	29	2.0	31	86	6	86	32	1	3	62	1.21
28970042--28970092	20	2.6	19	82	11	59	33	0	3	62	1.13
28970042--28970094	19	2.7	20	85	8	65	33	0	3	62	1.13
28970215--28970261	23	2.0	24	84	8	62	65	0	6	27	1.16
28971622--28971664	16	2.7	16	88	0	68	51	0	2	46	1.13
28981306--28981338	11	2.8	12	90	4	50	36	0	3	60	1.12
28981318--28981356	16	2.4	16	91	4	60	46	0	0	53	1.00
28981330--28981372	16	2.6	16	85	3	50	53	2	0	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28983220--28983417	59	3.4	57	77	10	170	38	22	2	36	1.68
28983209--28983486	88	3.2	84	78	11	231	37	24	2	35	1.69
28983209--28983534	29	11.1	30	71	12	162	37	24	2	35	1.69
28983307--28983497	59	3.3	59	75	13	171	37	24	2	36	1.68
28983302--28983500	87	2.3	88	80	6	235	36	25	2	35	1.68
28990428--28990559	12	11.2	12	77	14	100	80	0	18	0	0.81
28990428--28990552	27	4.8	25	74	21	98	80	0	18	0	0.82
28990428--28990552	26	4.6	27	79	16	109	80	0	18	0	0.82
28990431--28990559	47	2.6	48	79	14	133	79	0	18	0	0.82
28990429--28990559	29	4.5	28	73	22	110	80	0	18	0	0.81
28990429--28990564	19	7.1	19	75	16	86	78	0	19	0	0.84
28992210--28992379	78	2.2	78	80	4	182	24	31	18	25	1.98
28992404--28993481	204	5.3	205	87	2	1342	36	20	22	20	1.95
28993828--28993897	6	12.0	6	76	14	67	41	4	0	54	1.20
28993843--28993897	11	4.7	11	75	20	58	43	5	0	50	1.25
28993805--28993897	17	5.7	16	70	13	73	40	3	1	54	1.23
28995948--28996028	29	2.8	29	90	0	126	32	24	6	37	1.80
28995916--28996028	58	1.9	59	85	5	158	30	23	7	38	1.84
28995928--28996090	29	5.6	29	74	9	91	32	24	6	36	1.80
28996072--28996142	29	2.5	28	73	15	65	30	21	7	40	1.79
29000806--29000885	40	2.0	40	82	2	97	37	17	26	18	1.93
29001828--29001991	45	3.7	45	82	2	197	28	19	13	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29003035--29003100	6	11.0	6	72	18	57	45	4	0	50	1.22
29003036--29003074	20	1.9	20	89	5	60	43	0	0	56	0.99
29003035--29003100	30	2.2	29	84	10	80	45	4	0	50	1.22
29004758--29005092	163	2.1	163	86	3	462	25	18	13	42	1.87
29005149--29005254	30	3.6	30	74	16	94	36	33	1	28	1.68
29005163--29005410	29	8.5	28	68	25	142	33	29	2	34	1.69
29005160--29005410	59	4.3	58	90	4	389	33	30	1	34	1.69
29012993--29013028	2	18.0	2	100	0	72	0	50	0	50	1.00
29014058--29014104	24	2.0	24	95	0	85	29	8	2	59	1.39
29019236--29019297	27	2.2	29	83	11	76	35	0	8	56	1.29
29019442--29019471	14	2.1	14	93	0	51	50	20	0	30	1.49
29019678--29019718	19	2.2	19	86	0	55	78	0	21	0	0.76
29020045--29020081	3	12.3	3	94	0	65	32	0	35	32	1.58
29023609--29023652	15	2.9	15	75	3	52	27	4	0	68	1.09
29025869--29025911	17	2.4	18	81	11	54	55	0	2	41	1.12
29025869--29025915	18	2.6	19	80	16	55	55	0	4	40	1.19
29026264--29026324	21	2.8	22	72	18	56	65	1	1	31	1.12
29032932--29032997	34	1.9	34	96	0	123	27	3	15	54	1.55
29036003--29036080	31	2.5	32	89	6	124	43	15	15	25	1.86
29046407--29046452	19	2.5	19	82	3	58	52	6	0	41	1.27
29054420--29054476	29	1.9	30	85	3	80	31	3	8	56	1.47
29056447--29056487	20	2.0	21	85	4	57	34	4	9	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29056875--29056901	2	13.5	2	100	0	54	48	0	0	51	1.00
29057243--29057453	112	1.9	113	80	10	254	32	19	12	35	1.89
29057694--29057847	55	2.8	54	83	1	191	42	7	18	31	1.77
29069509--29069533	12	2.1	12	100	0	50	44	0	24	32	1.54
29070305--29070329	12	2.1	12	100	0	50	48	8	0	44	1.32
29082885--29082938	22	2.5	22	82	8	67	7	3	11	77	1.09
29082903--29082949	22	2.1	22	84	7	60	10	6	6	76	1.15
29082999--29083033	19	1.9	17	88	11	52	20	2	11	65	1.37
29105041--29105073	2	16.5	2	100	0	66	51	0	0	48	1.00
29105073--29105111	2	19.5	2	100	0	78	51	0	48	0	1.00
29106684--29106735	26	2.0	26	96	0	95	30	7	13	48	1.71
29107489--29107521	16	2.0	17	88	5	50	36	0	0	63	0.95
29112070--29112158	26	3.5	26	74	9	92	51	3	15	29	1.60
29112175--29112208	11	2.9	12	82	8	52	67	0	8	23	1.18
29114268--29114323	28	2.0	27	93	3	94	30	17	12	39	1.87
29118068--29118124	26	2.2	26	87	0	78	24	15	7	52	1.67
29121009--29121048	18	2.4	17	91	8	64	45	7	5	42	1.54
29123739--29123781	20	2.2	20	80	19	56	60	4	0	34	1.17
29131841--29131868	14	2.0	14	100	0	56	42	14	14	28	1.84
29133749--29133797	22	2.2	22	82	7	55	42	0	2	55	1.11
29133720--29133789	29	2.4	30	75	15	74	38	0	1	60	1.06
29134427--29134490	33	2.0	32	87	3	92	18	18	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29138715--29138777	32	2.0	32	90	0	99	44	25	0	30	1.54
29139186--29139251	29	2.2	30	81	8	80	51	12	10	25	1.71
29144366--29144397	6	5.3	6	100	0	64	50	0	15	34	1.45
29146060--29146124	31	2.1	31	91	5	105	26	13	18	41	1.88
29148761--29148905	24	5.8	24	72	9	110	33	18	28	19	1.95
29148755--29148930	50	3.5	50	88	2	246	35	18	25	20	1.95
29148752--29148913	52	3.2	52	88	3	247	35	17	25	21	1.95
29150966--29151046	29	2.8	29	78	0	81	24	22	29	23	1.99
29161516--29161546	2	15.5	2	100	0	62	48	0	0	51	1.00
29163926--29164046	58	2.1	58	86	6	165	45	19	0	34	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125