genome.fa.s6.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  25  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7373281--7373362	31	2.7	30	78	1	83	47	2	3	46	1.33
7373343--7373376	17	2.0	17	88	0	50	64	0	2	32	1.08
7373673--7373726	25	2.1	25	86	3	72	59	18	7	14	1.58
7377469--7377526	22	2.6	22	97	0	107	46	29	5	18	1.71
7380078--7380429	176	2.0	176	93	0	596	40	9	22	27	1.85
7383615--7383691	27	2.7	28	84	11	95	51	0	1	46	1.09
7383615--7383691	28	2.7	29	86	8	104	51	0	1	46	1.09
7392591--7392648	29	2.0	29	96	0	107	25	17	13	43	1.86
7397846--7397875	15	2.0	15	93	0	51	83	3	13	0	0.77
7405630--7405802	92	1.9	92	82	7	217	38	17	20	22	1.93
7405942--7405973	16	2.0	16	100	0	64	50	6	25	18	1.70
7408339--7408371	6	5.5	6	92	0	57	48	0	18	33	1.48
7412750--7412808	28	2.1	28	83	0	73	40	8	18	32	1.81
7415876--7415952	32	2.4	32	86	0	118	24	10	11	53	1.68
7416494--7416543	23	2.2	23	85	7	66	64	6	6	24	1.39
7432544--7432584	2	20.5	2	100	0	82	0	51	0	48	1.00
7436668--7436706	12	3.2	12	85	3	51	33	0	17	48	1.48
7441029--7441064	18	2.0	18	94	0	63	25	11	22	41	1.86
7442301--7442336	11	3.3	11	84	0	54	44	30	0	25	1.54
7443443--7443565	62	2.0	62	88	4	187	57	2	9	30	1.44
7445040--7445081	21	2.0	20	90	4	66	30	0	26	42	1.55
7447526--7447567	11	3.9	11	81	3	50	40	0	4	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7447528--7447589	17	3.8	17	80	6	74	40	0	4	54	1.22
7447526--7447567	22	2.0	22	85	4	59	40	0	4	54	1.21
7447532--7447623	27	3.3	27	73	3	76	45	2	4	47	1.34
7447545--7447598	16	3.3	16	79	5	54	42	1	1	53	1.22
7448368--7448401	15	2.3	15	94	0	59	55	0	2	41	1.15
7448395--7448433	20	1.9	21	94	5	71	48	0	2	48	1.15
7449403--7449486	42	2.0	42	92	0	141	27	34	3	34	1.74
7449498--7449659	30	5.5	31	66	14	99	33	25	3	38	1.72
7449445--7449696	59	4.3	59	87	2	353	32	26	2	37	1.71
7449467--7449680	29	7.3	28	66	22	118	34	27	2	36	1.70
7451869--7451939	17	4.2	17	80	5	81	38	0	7	54	1.27
7451876--7451948	33	2.2	33	82	0	83	41	1	4	53	1.28
7451882--7451955	27	2.7	27	78	0	76	41	1	4	52	1.28
7451895--7451948	16	3.3	16	79	5	54	42	1	1	53	1.22
7453747--7454233	176	2.8	176	90	0	742	33	29	3	33	1.74
7453995--7454205	29	7.2	29	65	25	86	33	27	2	36	1.72
7453747--7454233	59	8.3	59	89	0	706	33	29	3	33	1.74
7456893--7457318	99	4.3	98	81	5	425	17	25	19	38	1.93
7456829--7457302	49	9.6	49	68	11	209	17	24	18	38	1.92
7456865--7457318	197	2.3	195	81	4	502	17	25	19	38	1.93
7461348--7461385	19	2.0	19	89	0	58	0	21	18	60	1.36
7461726--7461756	14	2.1	15	94	5	55	25	3	19	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7461766--7461806	15	3.0	14	83	16	59	21	0	2	75	0.92
7461926--7461975	19	2.7	19	87	3	66	34	0	8	58	1.28
7464323--7464421	29	3.4	29	68	12	85	37	22	13	27	1.91
7465106--7465158	22	2.4	21	75	9	52	56	3	1	37	1.28
7466962--7467025	17	3.8	17	87	0	83	31	0	7	60	1.25
7468907--7469086	30	6.0	29	76	11	132	36	27	2	33	1.70
7468948--7469081	60	2.2	60	81	4	162	36	26	1	35	1.66
7469103--7469127	11	2.3	11	100	0	50	32	12	12	44	1.78
7473297--7473361	9	6.9	10	81	13	75	83	0	16	0	0.66
7473314--7473368	6	9.0	6	84	11	67	85	0	14	0	0.60
7473304--7473368	27	2.5	26	92	5	105	84	0	15	0	0.62
7473304--7473364	10	5.8	10	86	7	77	85	0	14	0	0.60
7474528--7474892	50	7.3	50	76	7	303	38	22	27	11	1.89
7474528--7475012	101	4.8	100	81	6	402	37	22	26	12	1.90
7474529--7474865	150	2.2	151	91	2	552	37	23	27	11	1.89
7474530--7475019	49	9.8	49	75	8	337	38	22	26	12	1.90
7474529--7475012	150	3.2	150	82	6	495	38	22	26	12	1.90
7474631--7474989	100	3.6	99	82	5	336	39	21	26	13	1.89
7474630--7475032	100	4.1	99	79	7	304	38	21	26	13	1.90
7475295--7475446	78	2.0	77	81	3	180	26	26	19	26	1.99
7475767--7476029	134	2.0	133	95	0	472	34	19	23	22	1.96
7475582--7476234	338	1.9	340	92	1	1096	35	19	23	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7475901--7477028	206	5.5	205	89	2	1676	35	21	22	21	1.96
7475901--7477028	410	2.7	410	90	3	1752	35	21	22	21	1.96
7477438--7477516	17	4.6	17	80	1	77	32	1	7	58	1.34
7479027--7479402	188	2.0	188	100	0	752	23	14	15	46	1.83
7479596--7479816	58	3.8	58	81	7	245	34	27	4	33	1.77
7479565--7479820	29	8.7	30	76	9	215	34	26	5	33	1.79
7479565--7479858	117	2.5	116	78	10	294	33	26	5	34	1.79
7482686--7482778	24	3.8	24	80	4	98	22	17	25	34	1.96
7483343--7483397	24	2.3	24	87	0	83	34	14	16	34	1.89
7489825--7489914	24	3.8	24	89	0	126	30	27	17	24	1.97
7500201--7500363	31	5.4	30	67	20	99	23	19	13	43	1.86
7500201--7500388	60	3.2	59	89	0	268	23	18	13	44	1.85
7500538--7500731	31	6.4	31	70	14	145	44	11	18	24	1.83
7504270--7504325	28	2.0	28	100	0	112	28	17	21	32	1.96
7507910--7507956	21	2.3	20	88	3	67	51	10	2	36	1.49
7508122--7508197	20	3.8	21	77	10	79	39	9	10	40	1.72
7508213--7508267	20	2.8	20	80	0	74	45	12	1	40	1.53
7509416--7509455	18	2.2	18	90	0	62	55	0	10	35	1.34
7511137--7511375	120	2.0	119	90	0	379	30	9	20	38	1.85
7517224--7517379	58	2.7	57	83	8	174	39	10	14	35	1.82
7519119--7519148	7	4.1	7	91	8	51	70	0	0	30	0.88
7519120--7519148	15	1.9	15	100	0	58	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7529932--7529993	28	2.2	28	86	8	83	46	30	3	19	1.65
7533262--7533308	2	23.5	2	100	0	94	0	48	0	51	1.00
7536502--7536543	18	2.2	19	84	16	52	64	2	2	30	1.19
7545317--7545720	50	8.2	50	78	5	306	37	17	25	20	1.94
7545296--7545697	99	4.1	99	85	2	459	37	17	25	19	1.94
7545413--7545707	149	2.0	148	86	2	412	37	17	24	20	1.94
7545710--7545844	49	2.8	49	83	2	155	34	20	31	14	1.93
7546159--7546260	46	2.2	46	85	1	143	38	28	12	20	1.89
7547313--7547375	32	2.0	30	82	11	74	33	4	1	60	1.27
7556948--7556987	17	2.4	17	82	0	53	15	0	7	77	0.98
7557015--7557039	10	2.5	10	100	0	50	0	8	0	92	0.40
7564361--7564408	18	2.4	21	80	13	57	70	6	6	16	1.28
7568156--7568191	18	2.1	18	89	5	56	33	8	11	47	1.69
7568336--7568400	30	2.2	30	94	2	114	29	18	16	35	1.93
7572818--7572859	20	2.1	20	82	8	50	28	7	14	50	1.69
7573215--7573253	20	2.0	20	84	0	51	41	0	0	58	0.98
7576864--7577125	130	2.0	130	96	0	488	38	19	10	32	1.85
7578964--7579062	40	2.5	41	88	6	150	29	20	20	30	1.97
7580962--7580997	18	2.0	18	88	0	54	25	8	41	25	1.83
7588808--7588842	2	18.0	2	94	5	63	51	0	48	0	1.00
7592278--7592320	18	2.4	17	81	11	50	60	0	2	37	1.10
7606913--7606961	23	2.1	23	84	0	62	22	2	0	75	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7612872--7612896	5	5.0	5	100	0	50	40	40	20	0	1.52
7613182--7613211	2	15.0	2	92	0	51	0	50	3	46	1.18
7622664--7622869	49	4.2	48	75	11	159	34	13	24	27	1.93
7623976--7624057	28	2.9	28	88	0	119	50	17	18	14	1.79
7627057--7627089	17	2.0	17	88	5	50	45	0	3	51	1.16
7635719--7635744	11	2.4	11	100	0	52	46	0	42	11	1.40
7636690--7636874	79	2.3	78	83	3	219	24	16	27	31	1.97
7636718--7637061	118	2.9	118	82	5	379	25	18	26	29	1.98
7636690--7637120	197	2.2	198	89	1	641	25	18	24	31	1.97
7636748--7637072	79	4.1	78	78	5	278	24	19	25	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125