genome.fa.s6.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  113  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34870386--34870648	60	4.3	61	78	11	236	41	16	18	24	1.90
34887034--34887100	32	2.1	33	83	8	84	17	11	13	56	1.66
34887356--34887381	2	13.0	2	100	0	52	0	50	0	50	1.00
34899524--34899603	41	2.0	41	92	0	133	40	12	6	41	1.68
34903326--34903368	22	2.0	22	100	0	86	11	41	32	13	1.81
34913070--34913109	21	2.0	21	90	5	64	17	5	12	65	1.44
34913586--34913638	23	2.4	22	81	12	63	35	5	7	50	1.54
34923469--34923554	44	2.0	44	86	9	122	56	18	9	15	1.64
34925593--34925623	15	2.1	15	100	0	62	61	6	6	25	1.45
34937720--34937818	41	2.6	38	74	6	92	30	28	19	22	1.98
34937937--34937965	6	4.8	6	100	0	58	17	31	0	51	1.45
34940890--34940946	24	2.4	24	87	0	78	50	8	14	26	1.71
34940906--34940952	24	2.0	24	100	0	94	55	6	12	25	1.61
34942103--34942164	24	2.6	24	80	7	63	46	0	1	51	1.10
34943164--34943200	17	2.2	18	85	9	51	54	0	24	21	1.45
34945685--34945719	15	2.2	16	90	5	54	20	14	0	65	1.26
34945963--34946012	22	2.2	23	82	3	57	54	0	6	40	1.25
34946101--34946139	20	2.0	20	94	0	69	46	10	7	35	1.67
34950608--34950655	23	2.1	23	84	7	62	29	8	14	47	1.73
34951860--34952027	29	5.7	29	71	10	99	34	9	24	31	1.87
34951925--34952025	29	3.4	31	76	13	104	34	7	23	33	1.84
34952008--34952359	30	11.9	29	75	9	241	32	2	26	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34951950--34952287	29	11.6	29	71	14	155	33	4	24	37	1.76
34952009--34952356	59	5.9	57	76	10	240	32	2	25	38	1.71
34952692--34952722	15	2.1	15	100	0	62	45	19	0	35	1.51
34953994--34954025	11	2.9	11	90	0	55	62	3	0	34	1.11
34953987--34954055	17	4.1	17	75	3	59	55	4	0	40	1.20
34953988--34954042	28	2.0	28	92	0	92	56	3	0	40	1.17
34953988--34954060	28	2.6	28	80	4	76	58	4	0	36	1.17
34954573--34954790	105	2.0	108	86	6	302	33	11	15	40	1.82
34957819--34957933	11	10.5	11	88	0	167	33	0	8	58	1.29
34957819--34957933	44	2.6	44	92	0	194	33	0	8	58	1.29
34959007--34959127	23	5.3	22	77	9	75	42	20	21	14	1.88
34962733--34962766	18	1.9	18	88	5	52	29	0	5	64	1.17
34965345--34965384	20	2.0	21	85	5	55	27	5	15	52	1.63
34970450--34970484	12	2.9	12	91	0	52	31	0	5	62	1.18
34971224--34971327	11	9.5	11	88	0	154	32	0	9	57	1.31
34971224--34971327	44	2.4	44	96	0	190	32	0	9	57	1.31
34974670--34974702	3	11.0	3	100	0	66	33	0	0	66	0.92
34976951--34977031	11	7.4	11	90	0	117	33	0	4	61	1.17
34981800--34981828	14	2.0	15	93	6	51	79	0	0	20	0.74
34982753--34982823	11	6.5	11	76	0	61	28	2	7	61	1.36
34982759--34982822	33	1.9	33	83	0	83	26	3	6	64	1.33
34983469--34983771	153	2.0	154	90	1	484	34	14	17	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34984287--34984512	29	7.8	28	68	23	130	34	2	30	32	1.70
34984287--34984636	117	3.0	120	83	8	434	37	2	27	32	1.71
34984287--34984636	59	6.0	59	87	2	422	37	2	27	32	1.71
34984454--34984535	29	2.8	32	74	23	90	36	3	31	28	1.75
34984621--34984734	58	2.0	58	86	6	160	36	7	24	31	1.82
34984557--34984747	29	6.6	28	75	12	127	38	5	23	32	1.77
34987666--34987744	17	4.6	17	74	12	72	51	3	1	43	1.27
34987654--34987731	40	2.0	40	85	10	106	50	3	1	44	1.28
34987650--34987743	23	4.5	22	70	18	67	53	3	1	42	1.24
34998221--34998261	16	2.5	17	76	11	50	31	4	0	63	1.15
34999158--34999204	24	2.0	24	91	0	76	25	59	8	6	1.50
34999164--34999205	12	3.5	12	78	12	50	28	59	9	2	1.41
34999208--34999305	9	10.9	9	73	12	85	23	47	14	14	1.80
34999208--34999330	27	4.6	27	96	0	219	21	47	13	16	1.81
34999236--34999357	54	2.3	54	85	0	154	25	50	11	13	1.75
35018283--35018316	13	2.6	13	90	0	50	55	5	11	26	1.58
35028174--35028206	15	2.1	16	88	5	50	66	0	15	18	1.25
35035775--35035832	24	2.4	24	82	5	64	48	1	1	48	1.22
35043066--35043111	2	23.5	2	95	4	85	0	50	0	50	1.00
35047458--35047508	6	8.5	6	76	8	50	47	17	3	31	1.66
35053129--35053169	4	10.2	4	83	0	55	29	2	19	48	1.61
35057348--35057590	90	2.7	89	76	10	221	33	5	23	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35057398--35057612	30	7.3	30	72	12	151	33	6	25	35	1.80
35057575--35057733	59	2.7	58	78	8	153	37	6	21	34	1.79
35057595--35057733	59	2.4	58	80	7	156	38	7	20	33	1.80
35057429--35057688	30	8.8	30	70	10	133	35	6	23	35	1.80
35061468--35061503	17	2.1	18	89	5	56	38	13	8	38	1.75
35065111--35065495	146	2.6	145	82	8	449	45	2	7	45	1.43
35065311--35065357	21	2.2	21	85	7	60	51	0	6	42	1.27
35066081--35066120	21	2.0	21	85	5	55	17	12	5	65	1.44
35070700--35070733	16	2.1	16	94	0	59	14	29	5	50	1.67
35070535--35070884	177	2.0	178	99	0	693	24	23	11	40	1.87
35076897--35076926	6	5.0	6	95	0	51	63	0	33	3	1.11
35078443--35078472	15	2.1	14	93	6	51	13	23	36	26	1.92
35095004--35095044	15	2.7	15	80	0	55	4	34	34	26	1.78
35096771--35096813	22	2.1	19	87	12	59	41	6	0	51	1.29
35101929--35101973	23	1.9	24	86	13	67	46	0	6	46	1.29
35105563--35105602	20	2.0	21	90	5	64	40	2	7	50	1.44
35105887--35105931	19	2.3	20	81	14	58	44	8	15	31	1.77
35110446--35110508	24	2.6	24	79	2	72	44	1	6	47	1.38
35110446--35110500	25	2.2	25	83	3	67	49	1	7	41	1.41
35111827--35111873	20	2.3	21	85	10	62	38	4	14	42	1.66
35142766--35142808	20	2.4	17	88	11	59	13	0	4	81	0.84
35145430--35145507	39	2.0	39	97	0	147	34	12	24	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35145565--35145965	84	4.7	84	83	7	493	38	14	20	26	1.91
35147960--35148056	24	4.1	24	71	7	74	13	6	11	69	1.36
35155072--35155106	7	5.0	7	100	0	70	42	0	42	14	1.45
35155331--35155380	25	2.0	26	84	11	68	12	16	2	70	1.26
35157503--35157539	19	1.9	19	88	0	56	21	0	13	64	1.27
35172902--35172944	16	2.8	15	79	6	50	55	4	13	25	1.58
35176717--35176755	15	2.7	14	84	7	51	43	0	0	56	0.99
35176910--35176963	2	27.0	2	100	0	108	50	0	0	50	1.00
35177825--35177868	23	2.0	22	86	4	61	52	2	0	45	1.13
35180619--35180655	15	2.3	17	86	9	51	37	5	0	56	1.22
35185741--35185782	16	2.7	16	77	3	50	69	0	0	30	0.89
35192769--35192815	20	2.5	18	83	16	60	57	0	0	42	0.98
35192780--35192821	20	2.0	21	95	4	77	59	0	0	40	0.97
35194311--35194350	15	2.5	16	84	8	55	35	2	0	62	1.09
35195931--35195977	21	2.1	23	84	7	62	17	0	21	61	1.34
35196219--35196308	36	2.5	37	87	1	119	48	21	5	24	1.71
35196219--35196319	36	2.7	37	81	4	114	50	18	5	24	1.69
35200911--35201000	45	2.0	45	88	0	135	28	10	15	45	1.78
35200956--35201349	36	11.0	36	86	0	515	28	13	17	40	1.87
35200956--35201349	108	3.7	108	95	1	686	28	13	17	40	1.87
35201332--35201366	17	2.1	17	94	0	61	25	11	31	31	1.91
35201349--35201498	36	4.2	36	92	0	237	28	15	19	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35201446--35201559	57	2.0	56	89	1	174	29	14	17	37	1.90
35201252--35201627	129	3.0	129	84	5	387	29	15	18	36	1.91
35201503--35201713	108	2.0	108	84	1	280	30	13	17	38	1.88
35201503--35201713	36	5.9	36	81	2	235	30	13	17	38	1.88
35201698--35201949	131	1.9	133	94	3	447	30	12	20	36	1.90
35203976--35204001	11	2.4	11	100	0	52	0	7	0	92	0.39
35211609--35211640	2	16.0	2	100	0	64	50	0	50	0	1.00
35211776--35211802	2	13.5	2	100	0	54	48	0	0	51	1.00
35212844--35212883	3	13.7	3	89	5	64	67	0	2	30	1.04
35213987--35214069	9	9.1	8	78	21	76	27	1	4	66	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125