genome.fa.s6.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  108  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32915278--32915373	41	2.3	41	90	0	147	37	26	5	31	1.78
32915278--32915339	20	3.0	21	66	29	60	37	24	6	32	1.81
32923159--32923277	58	2.1	56	81	9	134	44	9	4	42	1.56
32930127--32930167	16	2.4	17	88	8	57	36	2	0	60	1.10
32930178--32930213	19	1.9	19	88	5	56	30	0	5	63	1.17
32930183--32930245	19	3.3	19	82	8	65	34	1	4	58	1.29
32931721--32931783	33	1.9	33	96	0	117	12	26	20	39	1.89
32935298--32935354	17	3.5	16	86	9	62	64	0	33	1	1.04
32935298--32935341	21	2.1	21	95	0	79	65	0	34	0	0.93
32938556--32938602	21	2.2	21	92	0	76	25	14	36	23	1.93
32940466--32940567	30	3.4	30	64	9	82	45	11	5	37	1.65
32940600--32940649	16	3.2	16	73	21	52	34	0	6	60	1.21
32940851--32940999	44	3.3	44	66	15	122	46	9	1	42	1.44
32940783--32941133	93	3.8	93	94	1	623	47	12	1	38	1.50
32941072--32941193	62	2.0	60	93	3	208	48	15	1	34	1.55
32940980--32941286	153	2.0	154	91	5	505	47	13	1	37	1.51
32941134--32941382	94	2.7	93	91	3	405	47	12	1	38	1.52
32940886--32941380	247	2.0	247	92	3	836	47	12	1	38	1.51
32941732--32941780	24	2.0	24	84	0	62	0	28	0	71	0.86
32941740--32941782	20	2.2	20	83	8	52	0	27	0	72	0.85
32948848--32948899	27	1.9	27	88	0	77	25	23	34	17	1.96
32950743--32950797	24	2.3	24	84	6	67	16	25	36	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32963966--32964247	141	2.0	141	92	0	476	42	6	9	41	1.65
32964218--32964276	17	3.6	16	73	15	50	55	1	1	40	1.20
32967080--32967135	30	2.0	29	86	10	80	58	3	3	33	1.32
32968507--32968568	18	3.3	18	78	13	54	67	1	24	6	1.23
32973736--32973866	62	2.2	60	80	13	144	45	7	1	45	1.41
32974510--32974626	57	2.1	57	95	3	209	31	26	11	30	1.91
32976123--32976280	55	2.9	55	88	0	226	26	8	14	50	1.71
32979333--32979361	2	14.5	2	100	0	58	51	0	0	48	1.00
32983937--32984000	30	2.1	31	85	2	85	28	6	9	56	1.55
32984032--32984092	26	2.3	26	86	11	79	19	4	9	65	1.40
32984193--32984239	24	2.0	24	82	0	58	27	4	2	65	1.22
32984580--32984610	15	2.0	16	93	6	55	45	0	0	54	0.99
32987180--32987210	2	15.5	2	100	0	62	0	48	0	51	1.00
32988005--32988062	26	2.2	26	81	6	64	31	0	1	67	1.01
32989193--32989261	19	3.3	20	84	9	86	7	7	18	66	1.39
32989253--32989290	20	1.9	20	88	0	58	7	2	18	71	1.23
32989319--32989377	24	2.5	24	80	0	73	11	5	15	67	1.38
32989503--32989538	11	3.3	11	96	0	63	33	0	2	63	1.08
32990245--32990313	29	2.4	30	79	16	83	47	11	4	36	1.60
32991948--32991986	20	2.1	18	90	9	60	53	12	0	33	1.39
32993646--32993739	47	2.0	46	85	8	127	39	25	8	26	1.84
32997265--32997298	18	2.0	17	88	11	52	23	5	11	58	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32997271--32997306	18	2.0	17	89	10	54	22	5	11	61	1.50
32998158--32998195	18	2.1	18	90	0	58	47	13	13	26	1.79
32999057--32999111	29	2.0	27	86	13	76	32	18	1	47	1.59
32999419--32999477	29	2.0	30	90	3	93	30	3	11	54	1.53
32999423--32999486	29	2.2	29	83	8	76	32	4	9	53	1.54
33018341--33018369	7	4.1	7	100	0	58	13	27	13	44	1.82
33032448--33032498	21	2.3	22	80	6	59	35	3	1	58	1.28
33044044--33044112	9	7.7	9	72	18	63	37	0	0	62	0.96
33044043--33044085	17	2.5	17	88	0	68	37	0	0	62	0.95
33044008--33044109	28	3.8	28	69	20	74	43	0	0	55	1.06
33044139--33044180	9	4.7	9	85	8	59	61	0	0	38	0.96
33044144--33044180	19	1.9	19	94	0	65	64	0	0	35	0.94
33044144--33044180	10	3.8	10	92	7	58	64	0	0	35	0.94
33054112--33054150	20	2.0	20	90	5	62	33	2	20	43	1.65
33057500--33057543	22	2.0	23	81	4	54	36	0	2	61	1.09
33058954--33059001	2	24.0	2	95	0	87	52	0	0	47	1.00
33058997--33059064	24	2.9	22	74	10	64	27	1	5	64	1.25
33068718--33068745	2	14.0	2	100	0	56	50	0	0	50	1.00
33072390--33072429	17	2.4	17	91	0	62	75	10	0	15	1.05
33075814--33075863	25	2.0	26	84	4	66	64	6	2	28	1.28
33076576--33076641	30	2.2	30	84	7	82	39	7	10	42	1.68
33077859--33077932	23	3.3	23	75	9	71	43	1	0	55	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33077890--33077930	16	2.6	16	78	17	50	34	2	0	63	1.08
33077926--33077991	30	2.2	29	81	10	71	45	0	3	51	1.16
33077857--33078006	82	1.9	81	83	10	200	44	0	1	54	1.13
33077857--33078025	82	2.0	81	81	11	193	46	1	1	50	1.19
33080433--33080470	15	2.5	16	87	8	53	36	2	0	60	1.11
33092620--33092665	24	1.9	23	86	8	65	54	6	4	34	1.46
33096003--33096048	24	1.9	25	86	8	69	54	6	4	34	1.46
33121348--33121403	17	3.3	17	89	0	85	46	0	0	53	1.00
33122013--33122078	22	2.9	23	86	8	82	42	1	9	46	1.44
33122013--33122078	24	2.8	24	82	15	77	42	1	9	46	1.44
33123379--33123749	58	6.3	58	80	8	301	35	25	2	36	1.69
33123343--33123712	117	3.1	116	83	6	381	35	24	3	36	1.72
33123405--33123724	29	11.0	29	70	16	164	35	25	2	36	1.69
33123404--33123749	117	3.0	116	85	5	414	35	25	2	36	1.69
33123704--33123883	29	6.2	29	66	15	77	33	25	5	36	1.78
33123405--33123841	117	3.7	116	81	7	397	34	25	2	37	1.69
33129035--33129060	3	8.7	3	100	0	52	34	0	0	65	0.93
33135361--33135390	15	1.9	16	93	6	53	40	13	0	46	1.43
33139976--33140017	20	2.0	22	90	9	70	52	0	0	47	1.00
33139942--33140014	29	2.4	31	90	4	114	47	1	0	50	1.09
33143985--33144110	56	2.3	54	81	5	146	42	10	12	34	1.77
33144034--33144194	85	1.9	84	88	3	243	40	13	11	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33144034--33144194	84	1.9	85	88	3	245	40	13	11	34	1.81
33144172--33144254	35	2.4	35	85	4	105	45	15	8	30	1.76
33145366--33145404	18	2.1	19	85	4	53	64	0	0	35	0.94
33145480--33145536	10	5.7	10	80	0	60	7	35	22	35	1.82
33145481--33145519	20	2.0	20	94	0	69	5	35	23	35	1.77
33145806--33146513	201	3.5	206	90	3	1117	42	6	7	43	1.58
33147920--33147994	30	2.5	30	97	0	141	22	34	30	12	1.91
33147932--33147988	18	3.5	18	66	26	54	24	33	29	12	1.92
33147903--33147970	6	11.3	6	77	12	68	19	32	33	14	1.92
33148613--33148782	14	11.2	15	70	21	54	47	22	0	29	1.52
33148618--33148669	20	2.6	19	81	6	59	46	23	0	30	1.53
33148656--33148753	7	12.6	8	75	11	64	47	21	0	30	1.51
33148640--33148746	39	2.8	38	79	8	96	48	22	0	28	1.51
33148676--33148796	7	16.4	7	73	19	54	48	23	0	27	1.56
33148758--33148789	15	2.1	15	94	0	55	56	21	0	21	1.43
33148730--33148797	22	3.1	21	79	8	66	50	23	1	25	1.58
33149302--33149521	106	2.1	106	100	0	440	29	21	17	30	1.96
33151603--33151666	27	2.4	27	97	0	119	18	31	28	21	1.97
33155345--33155403	29	2.0	30	83	3	75	45	11	5	37	1.63
33162136--33162236	40	2.5	40	87	1	141	38	19	10	30	1.86
33162660--33162701	19	2.2	19	86	0	57	40	9	26	23	1.85
33164802--33164898	37	2.6	37	79	9	99	34	18	15	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33167412--33167451	21	1.9	21	85	10	55	55	10	12	22	1.67
33167495--33167554	28	2.1	27	82	11	68	33	8	10	48	1.67
33176174--33176233	28	2.1	29	84	9	79	51	15	3	30	1.59
33177406--33177521	57	2.0	57	89	0	178	25	20	36	18	1.95
33180490--33180515	6	4.3	6	100	0	52	15	19	50	15	1.79
33182082--33182135	3	18.3	3	96	3	101	68	0	0	31	0.90
33183181--33183243	20	3.1	20	95	2	108	38	25	22	14	1.92
33183183--33183262	21	3.9	21	88	4	110	33	28	22	15	1.94
33183184--33183243	7	8.7	7	87	3	86	35	26	23	15	1.94
33183325--33183354	15	2.0	15	100	0	60	20	0	33	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125