genome.fa.s6.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  76  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23724697--23724726	13	2.3	13	94	0	51	46	0	0	53	1.00
23729300--23729341	21	2.0	21	100	0	84	42	23	9	23	1.83
23731050--23731153	53	2.0	53	98	0	199	38	25	3	31	1.74
23737022--23737082	27	2.3	27	82	5	79	24	34	14	26	1.94
23737227--23737394	45	3.7	45	84	0	183	23	22	13	41	1.89
23740994--23741071	31	2.5	31	91	0	129	20	14	12	52	1.73
23742629--23742674	20	2.3	20	92	0	74	19	8	17	54	1.68
23750984--23751096	56	2.0	56	89	0	172	34	22	11	31	1.90
23752532--23752564	16	2.1	15	94	5	57	75	0	0	24	0.80
23752552--23752604	21	2.5	20	84	9	61	58	3	1	35	1.27
23762941--23762991	27	2.0	25	81	14	59	37	1	0	60	1.08
23763922--23764009	21	4.2	21	85	7	81	34	12	17	36	1.87
23763936--23764020	21	4.0	21	87	3	116	35	9	15	40	1.79
23763935--23764019	43	2.0	43	90	0	134	35	9	14	41	1.78
23773421--23773483	29	2.2	29	88	0	90	31	25	19	23	1.98
23773427--23773478	15	3.5	15	77	15	63	28	26	21	23	1.99
23785483--23785529	18	2.6	18	96	0	85	53	12	29	4	1.58
23786276--23786314	17	2.2	18	86	13	55	79	0	20	0	0.73
23787095--23787130	6	6.2	6	93	6	56	69	0	30	0	0.89
23787095--23787130	17	2.1	17	89	5	54	69	0	30	0	0.89
23791618--23791662	16	2.8	16	96	0	81	42	11	24	22	1.86
23792145--23792179	3	11.7	3	100	0	70	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23793115--23793156	17	2.5	18	77	14	54	28	0	0	71	0.86
23799104--23799168	12	5.5	12	71	10	62	23	13	21	41	1.89
23799104--23799173	23	3.0	22	87	6	95	25	12	20	41	1.88
23799110--23799191	23	3.5	23	81	8	78	30	12	18	39	1.87
23800176--23800238	32	2.0	32	81	6	74	30	3	3	63	1.25
23809434--23809519	28	3.1	28	93	0	145	38	20	13	26	1.91
23827451--23827612	28	5.8	28	85	1	191	39	20	14	25	1.90
23827451--23827612	84	1.9	84	84	2	218	39	20	14	25	1.90
23836003--23836036	17	1.9	17	88	5	50	38	2	2	55	1.30
23836558--23836609	16	3.2	16	78	5	52	15	23	1	59	1.46
23836572--23836621	16	3.1	16	78	16	50	18	26	2	54	1.54
23838631--23838755	27	4.8	27	83	4	132	23	18	24	33	1.97
23838631--23838862	25	9.0	25	81	5	155	23	16	25	34	1.95
23838631--23838821	50	3.7	51	80	8	174	23	16	25	34	1.95
23838802--23838865	26	2.5	26	92	0	110	20	18	26	34	1.96
23840390--23840438	21	2.3	21	100	0	98	38	14	4	42	1.64
23848221--23848292	15	4.8	15	84	6	76	29	25	20	25	1.99
23854688--23854754	15	4.5	15	73	0	53	23	25	28	22	1.99
23854720--23854757	15	2.5	15	91	8	60	18	23	34	23	1.96
23860184--23860234	24	2.1	24	92	0	84	25	17	25	31	1.97
23864751--23864801	24	2.1	24	92	0	84	25	17	25	31	1.97
23865511--23865562	21	2.5	21	81	6	61	23	15	30	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23866019--23866064	24	1.9	23	86	8	65	56	6	4	32	1.45
23869734--23869781	21	2.3	21	89	7	71	31	27	16	25	1.97
23877542--23877567	6	4.3	6	100	0	52	30	19	15	34	1.93
23878643--23878693	23	2.2	23	89	0	75	23	27	17	31	1.97
23889111--23889146	17	2.1	17	94	0	63	44	5	30	19	1.73
23891231--23891255	12	2.1	12	100	0	50	36	8	16	40	1.77
23894301--23894531	40	5.8	40	84	0	264	30	16	22	30	1.96
23894301--23894520	120	1.8	120	86	0	314	30	17	22	30	1.96
23906481--23906527	24	2.0	24	83	8	60	38	2	2	57	1.23
23912911--23913384	50	9.6	50	76	5	284	17	28	17	36	1.92
23912924--23913395	99	4.8	98	78	4	421	16	29	17	36	1.92
23914539--23914657	60	2.0	61	83	5	152	29	22	13	34	1.92
23914606--23914844	51	4.6	51	84	3	273	29	23	14	32	1.94
23929191--23929226	18	1.9	19	94	5	65	19	0	0	80	0.71
23929191--23929232	18	2.3	19	87	4	59	16	0	4	78	0.91
23929788--23929888	36	2.8	36	89	1	157	36	13	27	21	1.92
23933563--23933657	24	3.9	24	76	6	84	22	20	25	32	1.97
23933562--23933655	49	1.9	49	84	2	127	20	21	25	32	1.97
23933613--23933662	25	2.0	26	92	4	84	18	18	24	40	1.91
23938075--23938184	21	5.3	21	69	17	77	28	21	28	21	1.99
23938083--23938182	42	2.4	41	85	5	130	30	20	29	21	1.98
23951149--23951281	21	6.2	21	77	7	126	28	21	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23954686--23954738	16	3.4	15	75	17	54	33	0	0	66	0.92
23955858--23955913	21	2.7	21	78	13	62	58	7	0	33	1.25
23964340--23964440	31	3.3	32	78	13	106	12	13	17	55	1.69
23964692--23964781	17	5.3	16	67	19	58	20	37	2	40	1.65
23964684--23964781	34	2.9	34	93	0	169	19	36	3	40	1.67
23965242--23965318	33	2.3	34	81	4	93	28	9	15	46	1.76
23970024--23970073	2	25.0	2	100	0	100	50	0	0	50	1.00
23970267--23970324	17	3.4	17	70	25	59	18	37	3	39	1.68
23970242--23970339	34	2.9	34	92	0	160	19	35	3	41	1.67
23971406--23971471	19	3.3	19	74	6	60	57	3	1	37	1.23
23972563--23972588	2	13.0	2	100	0	52	50	0	0	50	1.00
23975052--23975082	15	2.1	15	100	0	62	54	12	0	32	1.38
23981588--23981613	6	4.3	6	100	0	52	34	15	34	15	1.89
23996281--23996319	19	2.1	18	85	4	51	58	5	33	2	1.33
23996617--23996663	21	2.2	21	85	7	60	61	6	25	6	1.44
23996680--23996705	3	8.7	3	100	0	52	69	0	30	0	0.89
23996787--23996840	17	3.1	17	86	5	63	20	14	11	53	1.71
24001208--24001338	49	2.7	49	75	3	129	23	19	16	39	1.92
24003210--24003259	21	2.4	20	78	18	57	54	0	2	44	1.11
24003402--24003435	17	2.0	17	100	0	68	17	47	5	29	1.71
24006377--24006511	67	2.0	67	97	0	252	42	15	20	20	1.88
24007487--24007552	34	1.9	34	84	6	89	19	19	13	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24007495--24007552	17	3.4	17	75	0	53	20	17	13	48	1.81
24008112--24008145	17	2.0	17	94	0	59	79	0	14	5	0.91
24032907--24032958	21	2.5	21	93	0	86	28	7	26	36	1.84
24033750--24033795	3	15.7	3	95	4	85	0	30	0	69	0.89
24034175--24034282	56	1.9	56	92	0	180	46	5	16	31	1.70
24034563--24034607	21	2.3	18	81	11	54	48	0	13	37	1.42
24035043--24035205	43	3.8	43	90	2	238	35	10	23	30	1.89
24042105--24042185	12	7.0	11	70	21	51	7	9	18	64	1.47
24042111--24042184	23	3.2	23	70	14	80	8	9	17	64	1.46
24042105--24042200	46	2.1	46	100	0	192	10	8	17	63	1.50
24042124--24042214	46	2.0	45	82	4	112	13	12	14	60	1.59
24044138--24044186	6	8.2	6	93	0	80	30	0	48	20	1.50
24044482--24044531	26	2.0	25	84	4	64	34	0	2	64	1.05
24045287--24045327	19	2.2	19	86	4	57	31	21	2	43	1.66
24045611--24045671	18	3.3	18	70	17	52	36	4	0	59	1.19
24046188--24046212	1	25.0	1	100	0	50	0	0	100	0	0.00
24053621--24053722	10	10.9	9	70	13	55	59	0	3	36	1.16
24053621--24053671	25	2.0	27	84	7	70	62	0	5	31	1.19
24053827--24053876	26	1.9	26	87	0	73	42	8	22	28	1.81
24054067--24054109	19	2.2	19	88	12	61	44	2	0	53	1.13
24056175--24056219	17	2.6	18	80	19	60	57	4	0	37	1.19
24058588--24058648	16	3.9	15	75	8	59	29	1	4	63	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24058589--24058656	32	2.1	33	88	2	102	27	1	4	66	1.20
24058618--24058677	27	2.2	27	81	0	75	26	1	8	63	1.32
24076394--24076438	22	2.0	23	83	12	58	35	2	15	46	1.58
24087173--24087220	19	2.6	18	80	9	60	75	0	18	6	1.01
24099363--24099451	40	2.2	40	82	4	108	35	20	24	19	1.95
24099378--24099498	40	3.1	39	81	6	118	36	17	25	20	1.94
24099436--24099524	41	2.2	40	91	2	142	30	13	30	25	1.94
24099513--24099541	15	1.9	15	100	0	58	31	20	27	20	1.98
24106440--24106633	30	6.8	30	71	18	130	37	7	22	32	1.82
24106884--24106969	36	2.4	36	86	0	118	31	24	22	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125