genome.fa.s6.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  14  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4492046--4492084	18	2.2	18	86	9	53	23	0	2	74	0.94
4492331--4492364	12	2.8	12	90	4	50	73	0	2	23	0.97
4493496--4493524	3	9.7	3	100	0	58	31	34	0	34	1.58
4500435--4500565	48	2.8	47	82	7	169	10	22	22	43	1.84
4500437--4500565	23	5.5	23	84	7	161	10	22	22	44	1.84
4500437--4500593	48	3.3	44	80	11	152	11	22	22	43	1.85
4500437--4500585	71	2.1	71	83	5	185	11	24	22	42	1.86
4506016--4506060	23	2.0	22	83	12	56	44	4	4	46	1.43
4507630--4507690	6	10.3	6	77	7	54	26	0	1	72	0.94
4508434--4508561	61	2.1	61	84	7	163	41	12	3	42	1.58
4508735--4508790	28	2.0	28	83	13	71	39	14	5	41	1.68
4512468--4512565	23	4.2	23	78	10	108	12	22	22	42	1.86
4513889--4513933	22	2.1	21	84	12	56	46	2	2	48	1.26
4530891--4530937	17	2.7	19	78	18	57	8	17	8	65	1.44
4547792--4547845	26	2.1	26	86	6	74	62	1	16	18	1.41
4547990--4548050	32	1.9	32	83	6	79	40	8	8	42	1.64
4548491--4548535	12	3.6	12	80	11	54	17	2	8	71	1.23
4548954--4549001	21	2.3	21	82	3	62	64	0	0	35	0.94
4548986--4549022	16	2.3	16	90	0	56	67	0	2	29	1.04
4549889--4549921	13	2.5	13	86	13	50	42	0	0	57	0.98
4555148--4555186	10	3.7	11	83	10	55	58	0	0	41	0.98
4555151--4555180	16	1.9	15	93	6	51	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4556443--4556473	16	1.9	16	93	0	53	3	9	3	83	0.86
4556030--4556738	381	1.9	380	97	0	1355	26	19	10	43	1.83
4556956--4557007	25	2.0	28	85	11	74	42	1	0	55	1.10
4557173--4557206	16	2.1	16	89	10	52	55	0	2	41	1.15
4558595--4558674	30	2.7	29	78	7	79	45	3	3	47	1.38
4564850--4564876	2	13.5	2	100	0	54	51	0	0	48	1.00
4564915--4564972	17	3.3	17	87	4	80	46	0	1	51	1.11
4574703--4575325	257	2.5	250	85	4	795	30	17	17	35	1.92
4580288--4580335	19	2.5	19	78	18	55	35	8	2	54	1.42
4583559--4583592	6	5.7	6	100	0	68	64	17	17	0	1.29
4589698--4589779	42	2.0	42	82	4	103	21	2	34	41	1.67
4602136--4602194	24	2.5	25	81	15	72	52	0	0	47	1.00
4603259--4603310	16	3.3	15	78	10	50	46	5	21	26	1.74
4603587--4603638	10	5.0	10	72	9	50	44	0	0	55	0.99
4603587--4603665	40	1.9	40	87	5	113	39	1	1	58	1.14
4605632--4605683	22	2.3	22	78	18	54	61	11	0	26	1.30
4631120--4631177	26	2.3	25	82	5	71	46	12	10	31	1.74
4632001--4632071	34	2.1	34	83	0	88	50	16	8	23	1.73
4632026--4632158	54	2.4	55	81	1	160	52	15	8	23	1.69
4636218--4636333	23	5.0	23	79	1	124	40	18	14	26	1.89
4636218--4636335	46	2.5	46	83	1	137	40	17	14	27	1.88
4637689--4637771	41	2.0	41	92	0	139	36	8	13	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4643212--4643292	11	7.9	10	71	22	62	59	2	2	35	1.24
4643854--4643910	24	2.4	25	91	8	100	45	8	0	45	1.34
4650197--4650287	23	4.0	23	83	8	114	10	24	24	40	1.87
4653586--4653610	13	1.9	13	100	0	50	48	8	8	36	1.62
4657247--4657293	22	2.3	19	85	10	58	25	0	6	68	1.13
4664439--4664529	8	10.6	8	74	17	76	37	1	1	60	1.11
4672864--4672913	19	2.6	20	87	9	77	38	14	8	40	1.75
4673629--4673688	30	2.0	30	87	3	86	48	0	30	21	1.51
4673792--4673841	18	2.7	18	87	3	64	46	12	6	36	1.66
4681984--4682018	18	1.9	18	88	0	52	11	0	40	48	1.39
4684011--4684054	22	2.0	22	86	4	63	38	0	0	61	0.96
4691158--4691206	16	3.1	17	82	8	59	48	0	0	51	1.00
4691202--4691274	30	2.3	32	81	11	80	58	5	0	35	1.21
4707571--4707650	39	2.0	40	92	2	135	30	20	17	32	1.95
4707572--4707667	39	2.5	36	80	12	113	29	19	18	32	1.96
4707691--4707736	19	2.3	20	78	17	51	36	15	2	45	1.58
4720729--4720771	16	2.6	17	81	3	52	72	0	0	27	0.85
4722764--4722819	28	2.0	28	96	0	103	33	21	12	32	1.91
4731166--4731223	9	6.4	9	70	21	50	41	0	1	56	1.09
4731168--4731197	15	2.0	15	100	0	60	40	0	0	60	0.97
4732422--4732452	2	15.5	2	100	0	62	51	0	0	48	1.00
4735619--4735702	39	2.2	38	81	12	91	38	3	1	57	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4742543--4742594	17	3.0	17	78	13	52	46	1	0	51	1.12
4747816--4747911	42	2.4	40	82	5	113	16	47	7	28	1.73
4747842--4747910	21	3.3	20	70	22	52	17	52	5	24	1.66
4747963--4748021	30	2.0	30	83	6	75	15	49	10	25	1.76
4747887--4748034	51	2.9	51	67	7	129	18	50	9	20	1.75
4748055--4748123	21	3.1	21	76	11	66	15	53	8	21	1.69
4748073--4748190	60	2.0	59	83	6	148	17	50	11	21	1.77
4748180--4748238	30	2.0	30	82	0	73	23	50	8	16	1.72
4748195--4748234	21	1.9	21	84	0	53	27	55	5	12	1.58
4748292--4748406	30	3.7	30	81	3	122	18	51	7	22	1.71
4748277--4748384	18	6.5	18	67	18	63	19	50	9	20	1.74
4748415--4748478	30	2.1	30	91	0	101	18	53	9	18	1.71
4748349--4748500	72	2.1	72	82	0	196	19	51	8	20	1.73
4748451--4748554	33	3.0	34	78	8	111	17	50	9	22	1.74
4748583--4748668	30	2.9	30	67	6	75	18	51	10	19	1.75
4748598--4749141	72	7.6	72	76	8	441	19	51	9	19	1.73
4748799--4748901	30	3.4	30	84	0	116	19	53	8	18	1.70
4748877--4749132	42	6.0	42	69	10	106	19	51	8	20	1.72
4748775--4749088	102	3.1	102	80	3	416	19	52	8	19	1.71
4748847--4748917	30	2.4	30	92	0	115	16	54	9	18	1.69
4748898--4748963	21	3.2	20	74	8	60	24	54	6	15	1.63
4748940--4749052	30	3.8	30	77	10	106	20	53	7	18	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4749003--4749075	30	2.4	30	90	0	110	17	53	10	17	1.72
4749078--4749141	30	2.1	30	82	5	76	17	46	9	26	1.78
4757522--4757580	30	2.0	31	86	6	86	42	0	3	54	1.17
4757545--4757587	22	2.0	22	90	9	70	44	0	2	53	1.13
4757546--4757592	21	2.1	23	84	7	62	42	2	4	51	1.33
4757611--4757696	12	7.2	12	71	20	56	30	2	1	66	1.12
4757611--4757705	24	4.0	23	72	22	72	29	3	2	65	1.20
4757601--4757695	44	2.2	43	79	9	102	29	3	1	66	1.14
4757648--4757696	16	2.9	17	82	14	66	30	0	2	67	1.02
4757635--4757703	15	4.2	16	82	12	70	30	1	2	65	1.16
4757751--4758086	168	2.0	168	90	0	528	30	23	15	30	1.95
4758228--4758367	41	3.4	41	73	1	129	24	21	30	23	1.99
4760186--4760231	23	2.0	24	87	12	69	43	4	2	50	1.34
4763514--4763551	18	2.1	18	100	0	76	23	15	39	21	1.92
4768104--4768142	21	1.9	20	84	5	51	10	7	25	56	1.59
4768321--4768354	3	11.3	3	100	0	68	32	0	0	67	0.91
4770685--4770745	16	3.5	16	74	20	59	39	29	18	13	1.88
4771501--4771543	2	21.5	2	100	0	86	48	0	0	51	1.00
4771677--4771719	19	2.3	19	83	0	50	46	6	2	44	1.43
4774294--4774394	52	1.9	52	89	0	157	43	10	12	32	1.78
4781026--4781059	18	1.9	18	88	5	52	29	0	5	64	1.17
4781183--4781230	21	2.2	21	85	3	60	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4787402--4787435	18	2.0	18	88	11	54	52	0	2	44	1.16
4794739--4794773	6	5.8	6	89	0	52	0	11	48	40	1.39
4805967--4806005	20	2.0	20	89	0	60	51	15	10	23	1.73
4807660--4807703	22	2.0	23	86	4	63	59	0	9	31	1.29
4809267--4809326	30	2.0	31	90	9	97	56	10	6	26	1.57
4809306--4809340	17	2.0	18	88	5	54	68	5	5	20	1.31
4811161--4811589	177	2.4	172	82	5	470	29	14	21	33	1.94
4817278--4817339	31	2.0	31	87	0	88	48	6	8	37	1.59
4826572--4826618	16	2.9	16	78	9	60	38	8	8	44	1.65
4831202--4831233	11	2.9	11	95	0	55	50	21	9	18	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125