genome.fa.s6.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  106  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32152455--32152515	19	3.2	19	71	24	56	60	1	0	37	1.07
32158652--32158696	2	22.5	2	100	0	90	48	0	0	51	1.00
32158720--32158761	20	2.1	20	82	8	50	45	2	0	52	1.13
32159259--32159352	15	5.6	16	70	22	52	54	0	2	43	1.12
32159269--32159349	17	4.7	17	67	19	51	56	0	2	40	1.12
32159319--32159358	20	2.0	21	90	5	64	55	0	0	45	0.99
32171686--32171714	12	2.4	12	100	0	58	79	0	20	0	0.74
32176313--32176372	29	2.1	29	100	0	120	16	33	10	40	1.82
32186191--32186333	71	2.0	71	98	0	277	28	20	17	33	1.95
32190258--32190290	15	2.3	15	89	5	50	27	0	6	66	1.15
32190422--32190456	18	1.9	18	88	0	52	45	0	2	51	1.16
32190513--32190541	15	2.0	15	93	6	51	62	0	0	37	0.96
32192410--32192436	12	2.2	12	100	0	54	70	7	7	14	1.32
32193475--32193512	18	2.1	18	85	9	51	71	7	2	18	1.23
32194596--32194723	28	4.7	28	90	7	219	10	22	26	39	1.87
32194596--32194723	52	2.4	54	92	5	215	10	22	26	39	1.87
32195118--32195154	6	6.2	6	100	0	74	16	16	51	16	1.77
32196416--32196456	18	2.4	17	83	4	55	60	4	0	34	1.18
32197283--32197354	22	3.4	21	76	12	69	62	2	4	30	1.28
32197579--32197626	22	2.1	22	88	3	69	45	0	2	52	1.12
32197632--32197690	32	1.9	30	86	10	84	35	1	1	61	1.16
32197683--32197738	2	28.5	2	96	3	105	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32198130--32198465	168	2.0	168	99	0	663	34	15	24	25	1.94
32200988--32201161	68	2.6	68	82	7	194	26	24	16	32	1.96
32202695--32202724	3	10.0	3	100	0	60	33	0	0	66	0.92
32203088--32203149	18	3.4	16	77	20	52	30	3	1	64	1.19
32203132--32203208	26	3.1	26	81	12	90	40	2	1	55	1.22
32203927--32204006	27	3.0	27	90	3	126	32	0	1	66	1.00
32207527--32207578	6	8.5	6	87	4	77	65	0	0	34	0.93
32207545--32207604	12	4.5	13	84	12	61	58	0	1	40	1.08
32208319--32208371	27	1.9	28	84	3	72	69	3	0	26	1.05
32208340--32208378	19	2.1	19	85	4	53	71	2	0	25	0.98
32214815--32214875	22	2.7	22	85	7	70	42	19	26	11	1.85
32215840--32215904	32	2.0	32	100	0	130	33	9	21	35	1.85
32223957--32223994	2	19.0	2	100	0	76	50	0	0	50	1.00
32227999--32228023	3	8.3	3	100	0	50	32	0	0	68	0.90
32238347--32238489	71	2.0	71	97	0	268	28	19	17	34	1.95
32242932--32242975	16	2.6	17	85	10	63	50	0	4	45	1.22
32254270--32254404	23	5.9	23	78	3	137	42	20	22	14	1.89
32254269--32254404	46	3.0	46	84	4	184	42	20	22	14	1.88
32254265--32254393	69	1.9	69	81	0	159	44	20	22	12	1.85
32256433--32256521	32	2.8	31	94	3	160	24	8	17	48	1.76
32256762--32256808	18	2.6	18	86	3	67	38	6	2	53	1.39
32288161--32288266	53	2.0	53	83	10	137	50	6	9	33	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32288243--32288301	26	2.2	27	75	3	66	66	3	0	30	1.08
32288743--32288805	10	6.6	10	73	14	53	28	3	3	65	1.24
32288743--32288807	28	2.3	30	78	10	73	29	3	3	64	1.23
32288747--32288827	37	2.2	38	82	6	94	27	6	2	64	1.30
32291410--32291753	167	2.1	167	100	0	688	40	7	9	43	1.65
32291940--32291978	18	2.2	18	85	0	51	48	5	15	30	1.66
32292085--32292123	18	2.2	18	90	0	60	28	7	7	56	1.55
32303762--32303958	100	2.0	100	86	2	279	25	18	14	41	1.89
32308382--32308409	9	3.1	9	100	0	56	57	0	0	42	0.99
32311285--32311312	4	7.0	4	100	0	56	0	0	25	75	0.81
32320302--32320374	29	2.5	29	76	12	78	47	6	1	43	1.38
32321929--32321963	17	2.1	17	88	0	52	45	2	2	48	1.32
32325907--32325966	28	2.2	27	88	8	86	61	1	3	33	1.22
32326247--32326298	27	1.9	27	88	7	79	57	19	1	21	1.50
32328439--32328546	28	3.9	27	77	14	89	60	3	2	33	1.29
32328439--32328547	29	4.0	27	78	13	100	59	3	2	33	1.29
32329237--32329305	29	2.4	29	75	4	68	36	7	18	37	1.79
32342490--32342628	66	2.2	65	89	5	219	39	12	5	42	1.65
32343799--32343827	3	9.7	3	100	0	58	31	0	68	0	0.89
32345754--32345787	2	17.0	2	100	0	68	0	50	0	50	1.00
32355126--32355152	13	2.1	13	100	0	54	44	0	7	48	1.31
32359688--32359729	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32371878--32371965	44	2.0	44	100	0	176	29	20	22	27	1.99
32373919--32374314	199	2.0	200	97	0	758	35	19	16	28	1.94
32401210--32401322	60	1.9	59	85	1	154	25	13	15	46	1.82
32401589--32401632	17	2.7	15	80	19	52	43	4	2	50	1.35
32402415--32402460	3	15.0	3	81	4	56	60	6	0	32	1.22
32403496--32403550	28	1.9	29	81	3	67	34	23	3	38	1.73
32403533--32403936	29	13.9	28	68	20	163	31	32	3	32	1.75
32403530--32403936	59	7.0	58	84	6	484	31	32	3	32	1.75
32408670--32408725	29	1.9	29	88	0	85	51	14	5	28	1.64
32412021--32412046	6	4.3	6	100	0	52	84	0	15	0	0.62
32423908--32423943	19	1.9	19	88	5	56	36	5	8	50	1.56
32436086--32436127	18	2.3	19	79	4	50	45	0	0	54	0.99
32447059--32447093	3	11.7	3	100	0	70	0	34	0	65	0.93
32452524--32452563	18	2.2	18	86	0	53	35	12	42	10	1.76
32453024--32453139	61	1.9	59	84	6	153	50	2	2	44	1.29
32454445--32454482	16	2.4	17	82	13	53	31	0	0	68	0.90
32456471--32456513	16	2.6	16	86	13	61	20	2	9	67	1.30
32456966--32456992	2	13.5	2	100	0	54	48	0	0	51	1.00
32458031--32458080	24	2.3	23	80	16	61	44	0	6	50	1.26
32458094--32458197	31	3.1	32	80	15	106	56	1	1	39	1.21
32458221--32458250	15	2.0	15	93	0	51	56	0	3	40	1.16
32459003--32459260	113	2.3	113	94	0	444	51	3	10	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32459651--32459698	18	2.9	17	75	12	55	66	0	0	33	0.92
32463613--32463657	16	2.9	16	73	26	51	20	22	11	46	1.81
32468126--32468186	30	2.0	32	81	9	74	31	11	9	47	1.72
32468318--32468404	31	2.9	31	75	3	79	43	11	9	35	1.73
32477287--32477392	54	2.0	54	86	0	149	32	19	14	33	1.92
32477665--32477698	16	2.1	17	88	5	52	14	58	0	26	1.36
32482976--32483027	19	2.8	19	80	11	56	67	5	0	26	1.13
32491339--32491365	10	2.7	10	100	0	54	40	0	44	14	1.46
32491490--32491535	25	1.9	25	86	8	69	32	4	6	56	1.45
32492846--32492915	34	2.1	34	88	0	104	47	7	21	24	1.76
32508566--32508614	24	2.0	24	96	0	89	16	14	4	65	1.42
32511402--32511440	20	2.0	20	89	0	60	43	2	15	38	1.60
32513703--32513782	10	8.0	10	75	15	60	62	1	1	35	1.11
32513703--32513781	20	4.0	20	75	8	81	62	1	1	35	1.12
32524346--32524376	3	10.3	3	100	0	62	0	35	0	64	0.94
32533395--32533447	27	2.0	27	85	7	72	26	11	28	33	1.91
32537183--32537229	2	23.5	2	100	0	94	48	0	0	51	1.00
32546456--32546590	43	3.1	42	69	18	107	31	19	20	29	1.97
32546477--32546638	87	1.9	87	88	1	245	30	19	19	29	1.97
32546456--32546657	87	2.3	86	82	5	237	29	19	20	30	1.97
32550821--32550988	87	1.9	87	87	0	246	34	28	10	26	1.90
32551551--32551933	189	2.0	189	88	2	563	23	26	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32553181--32554865	846	2.0	843	91	1	2696	37	14	11	36	1.82
32554978--32555012	18	1.9	18	94	0	61	40	14	11	34	1.82
32555480--32555521	20	2.1	20	82	8	50	30	23	0	45	1.53
32566669--32566730	22	2.8	22	75	7	63	14	4	14	66	1.41
32566691--32566767	29	2.6	30	74	12	79	11	5	16	66	1.41
32566702--32566768	29	2.4	28	82	9	82	13	4	14	67	1.38
32566750--32566802	17	2.9	19	83	13	67	11	5	15	67	1.38
32566957--32567040	38	2.2	37	80	14	91	28	0	5	65	1.16
32567878--32567911	18	1.9	18	88	5	52	47	0	2	50	1.16
32570158--32570217	31	2.0	30	90	3	93	35	18	3	43	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125