genome.fa.s6.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  122  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38564719--38565132	100	4.1	100	80	5	431	19	17	10	52	1.73
38575672--38575764	44	2.1	45	85	2	125	41	18	12	26	1.86
38575875--38575961	44	2.0	44	95	0	156	39	16	14	29	1.88
38581711--38581771	32	1.9	32	89	0	95	27	6	32	32	1.83
38591323--38591352	15	2.0	15	93	0	51	43	6	30	20	1.77
38593229--38593561	95	3.5	93	77	10	329	37	10	15	36	1.82
38593612--38593652	2	20.5	2	100	0	82	51	0	48	0	1.00
38600303--38600344	21	2.0	21	86	9	59	57	11	4	26	1.54
38603579--38603642	31	2.1	31	87	0	92	35	10	9	43	1.72
38605356--38605386	15	2.1	15	100	0	62	6	6	12	74	1.21
38605359--38605392	15	2.3	15	89	0	50	11	2	14	70	1.27
38618569--38618610	15	2.9	14	80	20	50	0	2	21	76	0.90
38619097--38619238	71	2.0	71	87	5	207	30	15	23	30	1.95
38622025--38622352	174	1.8	178	83	7	443	21	15	21	41	1.90
38630490--38630518	15	2.0	15	93	6	51	27	13	6	51	1.66
38634031--38634070	21	1.9	21	90	10	64	20	15	30	35	1.93
38641626--38641702	31	2.5	29	76	17	75	24	11	14	49	1.76
38642802--38642861	31	2.0	31	87	9	88	41	0	1	56	1.09
38644971--38645013	22	2.0	22	90	0	68	34	6	11	46	1.67
38646617--38646698	30	2.8	30	77	1	94	46	9	2	41	1.50
38647724--38647759	18	2.1	16	90	10	54	61	8	5	25	1.46
38650508--38650581	23	3.2	23	79	7	87	12	27	18	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38650597--38650649	23	2.3	23	87	3	72	15	24	26	33	1.95
38658605--38658643	20	2.0	20	90	10	62	64	2	2	30	1.21
38658601--38658652	24	2.2	25	80	19	67	63	5	3	26	1.34
38672334--38672394	31	2.0	31	83	3	79	40	11	9	37	1.75
38672400--38672445	23	1.9	24	82	8	58	23	15	6	54	1.64
38676346--38676374	4	7.2	4	100	0	58	51	24	0	24	1.48
38678592--38678634	19	2.3	19	88	4	61	41	11	2	44	1.53
38679208--38679281	36	2.1	36	100	0	148	32	17	21	28	1.96
38686730--38687173	108	3.9	110	78	8	368	22	14	21	41	1.89
38686853--38687188	116	2.9	116	83	3	419	22	14	22	41	1.90
38686624--38687188	232	2.5	226	80	9	576	22	14	21	41	1.89
38691952--38691987	6	6.0	6	86	0	54	13	55	0	30	1.39
38691951--38691986	18	2.0	18	94	0	63	11	58	0	30	1.33
38693379--38693448	32	2.2	32	87	2	97	31	10	12	45	1.75
38696967--38697071	30	3.5	30	66	19	76	23	14	12	49	1.77
38703099--38703138	20	2.0	20	100	0	80	40	10	25	25	1.86
38703334--38703375	12	3.1	14	80	16	52	2	33	2	61	1.21
38706967--38706999	16	2.1	16	88	5	50	60	0	6	33	1.21
38709760--38709807	6	7.7	6	77	9	51	31	0	6	62	1.20
38710222--38710453	124	1.9	125	83	5	310	31	12	17	38	1.86
38714187--38714268	41	2.0	41	92	0	137	20	13	12	53	1.71
38716918--38716961	23	2.0	23	86	4	63	34	4	4	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38718472--38718525	28	2.0	27	88	3	81	22	12	9	55	1.65
38718814--38718927	31	3.8	30	71	12	90	44	13	19	22	1.85
38718804--38718973	59	2.9	58	82	2	207	48	12	16	22	1.80
38719239--38719263	6	4.2	6	100	0	50	48	0	0	52	1.00
38721695--38721719	12	2.1	12	100	0	50	0	52	16	32	1.44
38723642--38723697	27	2.1	28	90	6	89	39	12	1	46	1.52
38726117--38726172	29	1.9	29	85	0	76	37	14	7	41	1.73
38731785--38731823	17	2.3	17	86	8	53	58	0	2	38	1.12
38733209--38733238	12	2.5	12	94	0	51	33	10	26	30	1.89
38738285--38738310	12	2.2	12	100	0	52	26	38	34	0	1.57
38740369--38740417	25	1.9	26	87	4	73	57	2	4	36	1.30
38740882--38740912	14	2.2	14	94	0	53	64	12	19	3	1.41
38746391--38746605	104	2.1	104	92	1	360	29	13	12	44	1.80
38748283--38748341	23	2.7	21	80	12	64	8	10	15	66	1.45
38751219--38751246	12	2.3	12	100	0	56	78	14	0	7	0.95
38756530--38756590	28	2.3	26	75	8	68	68	4	8	18	1.33
38760230--38760767	205	2.6	205	81	5	636	47	18	10	23	1.79
38760738--38760864	64	2.0	64	83	6	161	47	20	11	21	1.81
38761438--38761476	20	1.9	20	89	5	60	7	5	2	84	0.84
38761555--38761621	30	2.2	30	86	0	89	38	13	7	40	1.73
38761566--38761622	30	1.9	30	92	0	96	36	14	8	40	1.76
38762469--38762531	31	2.1	31	82	5	76	36	1	4	57	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38764169--38764223	15	3.4	16	78	19	53	67	0	25	7	1.16
38764186--38764248	24	2.7	24	78	7	67	69	1	23	4	1.16
38766943--38767059	58	2.0	58	98	0	225	41	11	5	41	1.64
38768100--38768175	15	4.9	15	74	19	50	68	1	25	5	1.18
38768117--38768179	24	2.7	24	80	7	76	69	1	25	3	1.12
38768120--38768162	18	2.4	18	76	3	52	67	0	27	4	1.10
38773330--38773395	24	2.8	23	76	4	69	68	1	24	6	1.21
38773329--38773377	18	2.7	18	78	6	55	67	0	26	6	1.14
38775594--38775634	22	1.9	21	85	14	57	60	0	2	36	1.10
38775817--38775855	19	2.1	19	85	9	53	43	2	12	41	1.56
38775948--38776054	53	2.0	53	90	0	169	30	14	25	28	1.95
38785301--38785325	8	3.1	8	100	0	50	52	0	0	48	1.00
38797860--38797911	26	2.0	26	84	0	68	38	7	9	44	1.66
38801547--38801580	16	2.1	16	94	0	59	55	2	5	35	1.39
38802434--38802458	12	2.1	12	100	0	50	60	0	0	40	0.97
38803959--38804004	21	2.0	24	84	12	62	65	0	0	34	0.93
38805349--38805403	22	2.5	22	71	11	58	45	1	7	45	1.41
38814235--38814292	24	2.4	24	88	5	82	18	31	15	34	1.93
38816586--38816610	8	3.1	8	100	0	50	48	0	0	52	1.00
38818544--38818595	17	3.1	17	85	0	77	42	0	1	55	1.10
38824162--38824205	11	3.9	11	81	3	52	84	4	9	2	0.85
38826749--38826800	25	2.1	25	86	13	72	57	9	1	30	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38827039--38827089	18	2.9	18	72	16	54	60	0	1	37	1.08
38830302--38830353	18	2.8	19	77	11	63	67	0	25	7	1.17
38841515--38841551	3	12.3	3	100	0	74	64	0	0	35	0.94
38842853--38842895	22	1.9	23	90	4	70	48	13	0	37	1.43
38850097--38850138	16	2.7	16	77	3	50	33	0	9	57	1.31
38854917--38854973	23	2.5	24	81	13	59	43	0	7	49	1.29
38855247--38855312	30	2.2	31	86	8	91	40	1	6	51	1.36
38861965--38862491	105	5.2	102	75	11	261	45	12	14	27	1.80
38861965--38862544	101	5.8	101	75	9	392	46	11	13	28	1.79
38863965--38864009	21	2.2	20	84	4	54	73	0	20	6	1.05
38866691--38866765	31	2.4	31	93	0	123	29	12	10	48	1.74
38866992--38867024	4	8.2	4	93	0	57	30	0	0	69	0.88
38870405--38870475	25	2.8	24	73	12	61	42	2	2	52	1.31
38870648--38870718	29	2.4	30	83	9	92	29	14	8	47	1.73
38871304--38871339	18	2.0	18	94	0	63	41	0	0	58	0.98
38871968--38872148	86	2.1	87	82	8	215	23	14	14	46	1.82
38872306--38872461	60	2.6	59	74	5	145	48	11	12	26	1.75
38875179--38875211	16	2.1	16	94	0	57	39	15	12	33	1.84
38876469--38876501	17	2.0	17	88	5	50	39	0	0	60	0.97
38877173--38877246	29	2.5	28	81	16	80	51	4	0	44	1.20
38878635--38878694	31	2.0	30	84	9	79	46	11	10	31	1.73
38879194--38879240	15	3.2	15	85	8	53	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38881093--38881126	6	5.7	6	100	0	68	0	67	17	14	1.23
38887784--38887843	30	2.0	30	83	0	75	46	23	8	21	1.78
38891439--38891605	81	2.1	81	83	2	219	22	14	19	43	1.88
38910882--38911203	140	2.3	141	79	5	330	23	25	15	34	1.95
38915276--38915516	118	2.1	116	90	1	358	51	12	5	31	1.62
38922412--38922448	18	2.0	18	89	5	56	51	0	5	43	1.24
38922741--38922774	16	2.1	16	94	0	59	47	8	5	38	1.59
38929928--38929975	20	2.4	20	82	6	62	45	0	0	54	0.99
38930100--38930155	25	2.2	26	84	9	71	44	26	8	19	1.80
38930328--38930396	23	2.9	24	68	23	65	49	1	5	43	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125