genome.fa.s6.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  47  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14542323--14542379	23	2.4	23	79	5	60	66	5	10	17	1.40
14549805--14549834	14	2.1	15	93	6	53	70	0	16	13	1.18
14555438--14555484	24	2.0	24	83	8	60	63	10	8	17	1.49
14557035--14557078	23	2.0	22	86	4	61	38	0	15	45	1.47
14561205--14561248	23	2.0	22	86	4	61	38	0	15	45	1.47
14563887--14564083	58	3.4	57	76	10	193	32	7	25	33	1.84
14563888--14564110	87	2.6	88	81	4	247	32	7	25	34	1.84
14563863--14564099	29	8.1	28	74	10	172	34	7	25	32	1.84
14564038--14564182	59	2.5	60	79	12	149	34	3	26	35	1.74
14564090--14564182	30	3.1	30	78	10	109	35	4	26	33	1.76
14563931--14564138	87	2.4	86	80	8	206	32	6	25	35	1.81
14566012--14566061	17	2.9	17	93	0	82	54	4	0	42	1.19
14573807--14573881	39	1.9	39	81	5	89	16	4	32	48	1.64
14573845--14573916	27	2.6	27	84	6	83	18	2	31	47	1.63
14573974--14574006	14	2.3	15	89	5	50	12	0	45	42	1.41
14575260--14575295	3	12.0	3	100	0	72	0	33	0	66	0.92
14576880--14577001	37	3.3	37	90	0	190	32	27	11	28	1.91
14581300--14581355	29	1.9	29	81	0	67	46	1	3	48	1.30
14584461--14584504	22	1.9	24	86	9	65	47	0	6	45	1.29
14584585--14584687	20	5.1	20	74	10	84	49	10	4	34	1.59
14587098--14587175	27	2.9	27	82	3	95	29	16	21	32	1.96
14588887--14589003	23	5.0	23	83	3	144	42	17	11	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14588894--14588980	12	7.4	12	70	10	63	42	18	12	26	1.86
14588894--14589003	47	2.3	47	98	0	211	42	17	12	27	1.85
14591639--14591699	30	2.0	31	90	3	97	42	0	1	55	1.09
14591672--14591735	22	2.9	22	79	9	76	40	3	3	53	1.33
14592788--14592828	21	2.0	20	86	13	57	53	0	0	46	1.00
14597692--14597738	24	2.0	24	83	8	60	70	0	0	29	0.88
14597693--14597741	11	4.3	11	76	7	53	73	0	0	26	0.83
14598658--14598982	30	10.9	30	79	8	281	33	26	4	35	1.77
14598667--14598982	119	2.7	120	82	6	360	33	26	4	35	1.78
14608372--14608537	83	2.0	83	86	4	235	34	16	22	25	1.95
14608291--14608725	207	2.1	201	88	4	626	35	18	22	23	1.96
14608625--14608728	37	2.8	37	100	0	208	34	20	23	22	1.97
14608453--14608905	122	3.7	122	76	11	476	35	19	22	22	1.96
14608418--14608935	244	2.1	244	93	0	865	35	18	22	23	1.96
14608821--14608980	48	3.6	47	73	20	171	34	15	23	26	1.95
14608820--14608977	85	1.9	85	91	2	264	34	16	23	25	1.95
14608662--14609321	209	3.2	209	88	1	975	36	18	21	23	1.95
14609030--14609189	48	3.6	46	73	17	149	36	14	22	26	1.93
14608293--14609144	453	1.9	451	90	1	1350	36	18	21	23	1.95
14609029--14609187	85	1.9	85	87	0	237	36	15	22	26	1.93
14610716--14610783	28	2.5	28	85	7	86	67	2	10	19	1.33
14611071--14611433	30	12.1	29	79	7	343	35	24	1	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14611053--14611433	90	4.2	89	81	4	392	36	24	1	37	1.66
14611064--14611505	90	4.9	90	78	6	340	36	26	2	35	1.68
14611408--14611481	37	2.0	36	87	7	105	36	33	2	27	1.71
14616371--14616414	21	2.0	21	86	8	61	50	0	0	50	1.00
14616375--14616435	31	2.0	30	84	9	79	49	1	0	49	1.10
14617515--14617600	20	4.4	19	68	22	54	46	1	1	51	1.16
14619284--14619330	24	2.0	24	86	0	67	17	17	44	21	1.86
14619384--14619496	60	1.9	60	85	3	156	11	23	37	27	1.90
14623743--14623793	22	2.4	22	87	9	70	60	7	11	19	1.55
14626736--14627599	23	37.6	23	84	0	1010	34	5	13	46	1.65
14627672--14627814	36	4.0	36	86	0	205	27	12	23	35	1.91
14628648--14628689	15	2.7	16	77	7	50	40	2	14	42	1.58
14635564--14635590	7	3.9	7	100	0	54	85	0	0	14	0.61
14639318--14639346	2	14.5	2	100	0	58	48	0	0	51	1.00
14639456--14639514	24	2.5	24	94	0	100	59	6	5	28	1.45
14639871--14639905	18	1.9	18	94	0	61	34	17	34	14	1.90
14640148--14640181	16	2.1	16	89	10	52	38	23	8	29	1.85
14644986--14645039	27	2.0	27	96	0	99	33	16	7	42	1.76
14646992--14647040	14	3.3	15	78	21	59	65	6	12	16	1.45
14647223--14647475	29	8.7	28	81	8	242	32	2	26	38	1.69
14647228--14647563	88	3.8	87	83	7	344	33	2	25	38	1.70
14647222--14647575	29	12.1	28	76	12	227	33	2	27	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14648296--14648333	19	2.1	19	85	5	51	31	21	0	47	1.51
14649062--14649093	14	2.1	16	88	11	50	12	6	28	53	1.62
14649299--14649337	19	1.9	19	85	10	51	25	0	5	69	1.09
14663639--14663779	53	2.7	53	84	0	183	36	10	23	29	1.88
14664177--14664236	24	2.6	24	80	14	74	31	30	11	26	1.92
14665964--14666408	222	2.0	222	97	0	845	36	18	7	37	1.79
14666656--14666712	29	2.0	29	82	0	69	29	17	21	31	1.96
14666719--14666780	29	2.1	29	82	11	74	37	17	22	22	1.94
14666863--14666919	27	2.2	26	84	9	71	38	15	21	24	1.92
14672110--14672158	22	2.2	22	82	7	55	28	6	0	65	1.16
14673875--14673960	18	4.8	18	69	11	68	15	37	5	41	1.71
14682617--14682691	39	1.9	39	81	10	91	36	16	18	29	1.92
14691349--14691376	14	2.0	14	100	0	56	21	21	21	35	1.96
14702156--14702211	24	2.3	24	87	3	76	19	7	19	53	1.68
14706376--14706414	12	3.2	12	81	0	51	48	0	28	23	1.51
14711721--14711759	12	3.2	12	81	0	51	48	0	28	23	1.51
14714912--14714951	3	13.3	3	100	0	80	65	0	0	35	0.93
14717940--14718141	40	5.0	40	86	1	260	30	19	25	24	1.98
14717940--14718141	81	2.5	80	86	0	278	30	19	25	24	1.98
14724882--14725020	38	3.7	38	90	0	215	30	25	15	28	1.95
14725093--14725175	6	14.0	6	69	20	59	43	3	1	51	1.26
14725093--14725175	17	4.7	17	80	16	89	43	3	1	51	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14725993--14726036	16	2.8	16	83	10	54	47	0	2	50	1.13
14727138--14727384	30	8.4	29	70	18	145	36	27	3	32	1.74
14727130--14727408	59	4.7	59	80	4	217	36	25	3	34	1.75
14727229--14727384	29	5.3	29	68	19	90	37	27	3	32	1.73
14727166--14727407	118	2.1	118	84	1	306	35	26	4	33	1.77
14735952--14736030	24	3.3	24	70	10	81	27	1	20	50	1.56
14735935--14736047	47	2.4	47	95	1	199	21	2	28	47	1.64
14747017--14747117	26	3.9	25	75	19	82	20	3	3	71	1.19
14747023--14747112	11	8.0	11	71	17	60	20	3	4	72	1.17
14746921--14747097	97	1.8	94	83	6	221	19	6	5	68	1.30
14747069--14747112	16	2.7	15	86	10	52	22	2	0	75	0.92
14747501--14747535	16	2.2	16	94	0	61	20	25	28	25	1.99
14748022--14748182	85	1.9	85	84	5	218	40	13	9	36	1.77
14749396--14749467	25	2.7	25	81	12	74	66	0	1	31	1.00
14749407--14749446	19	2.2	18	86	4	53	65	0	0	35	0.93
14749588--14749796	90	2.3	90	81	4	253	43	7	9	40	1.65
14750718--14750765	24	2.0	24	95	0	87	37	22	8	31	1.84
14753885--14754038	57	2.6	59	83	5	168	26	14	9	50	1.72
14753895--14754058	62	2.8	59	80	8	181	27	13	9	50	1.72
14754279--14754358	31	2.6	31	84	5	101	46	7	16	30	1.74
14754811--14754850	19	2.2	19	86	4	55	52	2	2	42	1.28
14754909--14755166	93	2.8	90	77	11	265	41	16	6	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14755246--14755336	21	4.4	20	72	9	58	23	3	1	72	1.06
14755307--14755343	7	5.3	7	100	0	74	13	0	0	86	0.57
14757233--14757288	10	5.8	9	80	14	58	73	0	3	23	0.99
14757232--14757286	20	2.7	21	86	8	69	72	0	3	23	1.00
14757348--14757384	10	3.4	11	88	11	58	75	0	5	18	0.99
14757343--14757384	22	1.9	22	90	9	68	71	2	4	21	1.16
14757706--14757757	27	2.0	26	88	7	79	34	3	0	61	1.14
14757886--14757933	20	2.3	21	89	3	71	64	4	0	31	1.12
14758375--14758415	7	5.9	7	100	0	82	0	29	14	56	1.39
14758634--14758666	17	1.9	17	93	0	57	63	0	0	36	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125