genome.fa.s6.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  24  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7169076--7169144	17	3.9	17	76	16	61	42	2	1	53	1.24
7169061--7169144	42	2.0	42	86	4	116	41	3	2	52	1.31
7169113--7169152	17	2.4	16	84	12	53	40	5	5	50	1.46
7171082--7171523	30	15.1	27	65	21	121	32	28	2	36	1.70
7171082--7171553	59	8.1	58	82	7	546	32	28	2	37	1.70
7171093--7171553	29	15.7	30	66	23	166	32	27	2	36	1.70
7171082--7171553	117	4.0	117	84	6	539	32	28	2	37	1.70
7183651--7184282	200	3.2	199	88	2	926	36	18	21	23	1.95
7184125--7184410	135	2.1	135	93	0	491	34	16	23	24	1.95
7184807--7184875	11	5.8	12	72	14	63	42	2	1	53	1.24
7184807--7184875	6	11.7	6	73	14	63	42	2	1	53	1.24
7184807--7184875	17	3.9	17	76	16	61	42	2	1	53	1.24
7184792--7184875	42	2.0	42	86	4	116	41	3	2	52	1.31
7184844--7184883	17	2.4	16	84	12	53	40	5	5	50	1.46
7186788--7187078	29	10.0	29	65	24	82	32	31	2	33	1.70
7186794--7187080	59	4.9	58	84	5	357	32	31	2	33	1.71
7186922--7187078	29	5.4	28	68	23	94	31	33	1	33	1.66
7198725--7198765	20	2.1	20	86	4	57	9	14	0	75	1.04
7200737--7200780	23	1.9	23	90	0	70	40	22	13	22	1.89
7200864--7200894	12	2.6	12	94	0	53	54	19	12	12	1.70
7206083--7206120	20	2.0	20	84	5	51	57	5	2	34	1.35
7206573--7206611	19	2.1	19	85	0	51	41	7	5	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7207790--7207852	29	2.2	29	82	5	74	44	1	4	49	1.33
7208031--7208110	35	2.2	36	84	8	110	31	12	2	53	1.51
7210936--7211017	43	1.9	43	87	0	119	30	21	15	31	1.95
7211288--7211421	66	2.0	66	80	0	151	14	25	18	41	1.88
7215280--7215361	32	2.5	32	75	18	87	62	4	3	29	1.33
7227400--7227473	21	3.4	21	70	5	67	66	5	4	24	1.30
7228033--7228164	41	3.2	41	81	1	156	20	21	15	42	1.89
7228033--7228190	82	1.9	82	81	2	192	19	19	15	45	1.85
7240687--7240726	21	1.9	21	85	10	55	60	5	0	35	1.19
7240697--7240779	27	3.1	25	78	11	85	65	2	1	31	1.13
7242517--7242651	20	7.2	19	71	19	72	62	3	1	32	1.22
7242517--7242634	10	11.5	10	69	16	64	61	4	0	33	1.21
7242689--7242722	17	2.0	18	88	11	54	67	0	0	32	0.91
7243397--7243556	29	5.6	28	72	19	102	33	1	3	61	1.22
7243545--7243596	26	2.0	25	82	10	61	28	1	1	67	1.12
7243492--7243580	29	3.1	29	77	7	85	30	1	4	64	1.21
7244248--7244287	19	2.1	19	90	9	64	57	7	0	35	1.27
7244276--7244344	33	2.1	34	84	7	90	57	1	1	39	1.16
7247436--7247486	24	2.1	24	100	0	102	60	7	11	19	1.55
7249399--7249461	24	2.6	24	84	0	81	49	7	12	30	1.69
7253915--7253958	8	5.5	8	81	7	54	2	9	2	86	0.75
7253915--7253980	26	2.6	26	88	7	91	4	10	4	80	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7253910--7253980	24	3.0	23	80	13	74	5	9	5	78	1.07
7255348--7255404	19	2.9	19	89	5	87	12	17	19	50	1.77
7255348--7255407	20	3.0	20	92	2	95	11	18	20	50	1.77
7256022--7256050	6	4.8	6	100	0	58	34	0	34	31	1.58
7265350--7265412	19	3.2	19	84	8	74	57	4	1	36	1.30
7268668--7268737	19	3.7	18	75	14	70	60	4	1	34	1.25
7268643--7268762	28	4.3	27	75	10	98	60	4	1	33	1.25
7268668--7268762	9	10.2	9	73	15	70	61	4	2	32	1.27
7268657--7268753	38	2.6	37	79	9	99	60	5	2	31	1.30
7269041--7269092	21	2.5	21	85	14	72	30	3	1	63	1.23
7269041--7269296	10	26.6	9	69	19	110	35	2	1	59	1.21
7269192--7269242	24	2.0	26	85	7	70	47	1	0	50	1.12
7269225--7269313	9	9.2	10	77	14	64	30	1	1	67	1.05
7269220--7269313	38	2.5	38	80	11	95	31	1	1	65	1.06
7269293--7269359	9	7.4	9	77	12	57	31	2	1	64	1.18
7269317--7269360	10	4.5	10	85	5	54	31	2	0	65	1.05
7269315--7269357	19	2.3	19	87	0	59	37	2	0	60	1.10
7286877--7287059	90	2.0	90	98	0	357	36	15	13	34	1.87
7290884--7290935	25	2.1	25	88	0	77	57	0	1	40	1.10
7291696--7291739	16	2.5	18	85	10	56	72	4	0	22	1.02
7291712--7291757	21	2.2	20	88	3	65	63	4	0	32	1.14
7291695--7291757	21	3.3	19	79	16	60	65	4	0	30	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7291845--7291905	10	5.9	10	73	7	50	60	0	8	31	1.26
7291984--7292022	19	2.0	19	90	5	60	33	7	0	58	1.26
7291984--7292037	20	2.7	19	83	11	65	33	5	0	61	1.19
7291949--7292064	60	1.9	60	83	10	148	36	5	1	56	1.32
7292021--7292064	8	5.6	8	78	5	54	40	0	0	59	0.98
7292018--7292064	23	2.0	24	87	4	69	40	0	0	59	0.97
7292020--7292080	23	2.6	23	78	2	59	42	0	0	57	0.98
7292450--7292511	29	2.2	29	94	2	108	38	6	4	50	1.50
7292997--7293047	20	2.7	18	79	8	57	39	0	5	54	1.24
7295458--7295511	28	1.9	28	88	0	81	46	11	12	29	1.77
7297269--7297332	31	2.0	34	81	9	80	59	1	10	28	1.40
7297410--7297451	21	2.0	22	90	4	68	7	9	16	66	1.42
7298749--7298792	17	2.6	17	81	0	61	63	2	0	34	1.07
7300526--7300953	29	14.6	28	72	10	207	35	3	26	35	1.72
7300639--7300953	59	5.4	58	77	11	277	35	2	25	36	1.69
7300670--7300987	30	10.8	29	76	13	224	35	2	25	37	1.68
7302880--7302941	18	3.6	16	81	14	70	50	1	1	46	1.20
7302869--7302949	6	13.8	6	69	14	53	48	1	2	48	1.23
7302895--7302951	24	2.4	24	84	0	69	54	1	1	42	1.21
7302918--7302987	12	5.7	12	71	18	54	57	1	1	40	1.17
7304027--7304073	19	2.4	20	82	13	62	55	0	0	44	0.99
7304450--7304485	18	2.0	18	88	0	54	52	2	5	38	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7319130--7319172	18	2.4	18	92	0	68	27	25	13	32	1.94
7321164--7321221	22	2.6	23	81	8	66	60	6	0	32	1.23
7321400--7321465	12	5.7	12	71	5	55	65	25	3	6	1.30
7321400--7321461	23	2.6	24	71	5	72	64	25	3	6	1.33
7322929--7323332	59	6.9	59	86	5	531	34	3	29	32	1.74
7322930--7323360	117	3.7	117	86	4	554	34	3	29	32	1.74
7322929--7323360	176	2.5	175	88	6	608	34	3	29	32	1.74
7322935--7323329	30	13.4	29	67	20	139	35	3	28	33	1.73
7323163--7323303	29	4.8	31	73	14	102	34	3	29	33	1.75
7324326--7324350	3	8.3	3	100	0	50	36	0	0	64	0.94
7324380--7324404	7	3.6	7	100	0	50	28	0	0	72	0.86
7324801--7324859	27	2.2	27	87	6	84	22	11	28	37	1.89
7325302--7325373	11	6.6	11	74	7	58	48	0	4	47	1.21
7325294--7325373	6	13.2	6	76	16	67	47	0	3	48	1.19
7325311--7325379	17	4.3	17	83	12	92	52	0	4	43	1.21
7325787--7326064	38	7.3	37	63	16	113	32	20	14	32	1.93
7325743--7326420	76	9.0	76	90	3	1036	31	19	16	32	1.94
7325900--7326397	38	13.4	37	65	17	192	32	19	15	32	1.93
7325743--7326420	151	4.5	151	90	4	1041	31	19	16	32	1.94
7338497--7338781	29	9.8	28	64	18	109	33	3	30	31	1.75
7338497--7338801	59	5.2	59	88	2	404	33	3	31	31	1.75
7338525--7338822	29	10.2	29	67	20	106	32	4	30	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7340711--7340815	6	17.8	6	75	18	96	49	0	3	46	1.19
7340727--7340815	17	5.4	16	81	14	101	51	0	3	44	1.18
7340739--7340815	37	2.0	38	82	9	95	53	0	3	42	1.19
7340736--7340825	11	8.9	10	71	25	57	52	1	4	42	1.29
7341730--7341762	16	2.1	16	94	0	57	39	18	42	0	1.50
7344402--7344445	22	2.0	22	86	8	63	70	0	0	29	0.88
7344534--7344558	11	2.3	11	100	0	50	8	0	48	44	1.32
7349687--7349752	31	2.2	30	83	8	80	48	7	4	39	1.52
7349936--7349975	18	2.1	20	86	9	57	42	2	0	55	1.13
7353532--7353627	41	2.3	41	96	0	174	29	6	28	36	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125