genome.fa.s6.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  55  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16956605--16956702	36	2.7	36	84	3	117	24	25	22	27	2.00
16959888--16959927	20	1.9	22	85	10	57	57	0	0	42	0.98
16972190--16972231	20	2.0	21	95	4	77	47	4	16	30	1.67
16972611--16972668	5	10.8	5	78	14	62	72	3	3	20	1.14
16972610--16972668	22	2.7	22	84	7	75	71	3	3	22	1.16
16972996--16973025	3	10.0	3	92	0	51	70	0	30	0	0.88
16973024--16973072	3	16.7	3	93	4	73	38	0	61	0	0.96
16973029--16973076	23	2.1	23	96	0	87	41	0	58	0	0.98
16973018--16973077	26	2.3	26	97	2	111	45	0	55	0	0.99
16974044--16974120	29	2.6	29	78	10	93	19	3	19	57	1.56
16974013--16974114	30	3.4	30	77	8	102	20	5	20	52	1.67
16974013--16974139	60	2.1	58	81	8	139	23	6	20	49	1.71
16976111--16976222	36	3.0	37	84	3	145	31	33	20	14	1.92
16976305--16976353	2	24.5	2	100	0	98	51	0	0	48	1.00
16978491--16978543	20	2.8	20	88	8	83	7	13	0	79	0.93
16978494--16978543	19	2.7	18	84	9	73	8	12	0	80	0.92
16980992--16981070	15	5.1	15	82	8	95	67	1	3	27	1.16
16980992--16981175	18	10.6	18	74	17	92	69	2	4	23	1.20
16980992--16981166	15	11.9	14	74	17	94	68	2	4	24	1.20
16981016--16981170	18	8.2	20	76	16	102	69	1	3	24	1.15
16981087--16981170	17	4.9	17	85	8	100	73	1	4	20	1.08
16981000--16981082	3	27.7	3	81	0	94	66	2	3	27	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16981124--16981171	24	2.0	24	88	8	71	77	2	4	16	1.03
16981839--16981997	75	2.1	76	85	3	214	28	24	18	28	1.98
17000098--17000604	258	2.0	259	91	0	818	32	18	15	33	1.92
17009703--17009749	15	3.1	15	87	6	60	63	0	0	36	0.94
17010086--17010132	15	3.1	15	84	6	51	57	2	4	36	1.30
17011163--17011197	17	2.1	17	100	0	70	22	11	25	40	1.88
17011281--17011403	61	2.0	61	98	0	237	41	4	7	46	1.53
17013441--17013467	13	2.1	13	100	0	54	37	25	7	29	1.83
17021719--17021795	17	4.5	17	77	6	75	41	1	3	53	1.27
17021729--17021816	6	15.2	6	67	15	51	47	2	2	47	1.27
17021716--17021795	34	2.4	34	85	4	99	41	1	5	52	1.31
17023059--17023233	30	5.9	30	78	11	173	36	25	2	34	1.71
17023070--17023233	59	2.7	59	85	5	197	37	25	2	35	1.69
17030769--17030855	40	2.2	40	80	2	102	35	19	28	16	1.93
17030784--17030869	40	2.2	40	82	2	111	38	20	23	17	1.93
17032183--17032252	23	2.9	24	74	18	58	62	1	4	31	1.23
17032271--17032361	41	2.2	41	92	0	146	34	20	25	19	1.97
17034662--17034790	8	16.0	8	68	16	70	45	3	0	50	1.22
17034728--17034886	26	6.4	26	65	19	88	49	5	1	44	1.32
17034662--17034814	45	3.1	51	81	8	167	47	4	0	47	1.27
17034700--17034957	52	4.7	56	69	15	171	48	4	1	45	1.29
17034844--17034923	42	1.9	42	89	0	124	52	7	0	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17034919--17034952	17	2.0	17	88	0	50	41	0	2	55	1.15
17035056--17035166	50	2.2	50	83	3	141	49	8	0	41	1.38
17035157--17035204	8	5.5	8	77	18	51	35	0	2	62	1.07
17035093--17035316	76	3.0	75	80	10	237	46	5	1	46	1.34
17035156--17035204	18	2.7	18	96	0	89	36	0	2	61	1.08
17035156--17035203	10	5.2	10	78	16	59	37	0	2	60	1.09
17034984--17035360	196	2.0	182	84	9	488	47	5	1	45	1.33
17035286--17035316	8	3.9	8	95	0	53	48	0	0	51	1.00
17035258--17035337	42	1.9	42	89	5	126	55	6	0	38	1.25
17035174--17035598	112	3.8	111	84	5	507	48	5	1	44	1.34
17034764--17035756	414	2.4	414	96	0	1819	48	5	1	44	1.33
17035507--17035542	16	2.2	16	90	0	54	38	2	2	55	1.29
17035571--17035618	8	5.5	8	77	18	51	35	2	2	60	1.20
17035570--17035618	18	2.7	18	90	0	80	36	2	2	59	1.21
17035534--17035787	76	3.4	76	75	14	215	48	5	1	44	1.34
17035364--17035905	195	2.9	180	80	10	593	47	5	1	45	1.32
17035664--17035831	79	2.2	76	89	5	248	52	5	0	41	1.29
17045080--17046312	207	6.0	207	93	0	2089	33	20	23	22	1.97
17046630--17046706	17	4.5	17	77	6	75	41	1	3	53	1.27
17046640--17046727	6	15.2	6	67	15	51	48	1	2	47	1.21
17046626--17046706	34	2.4	34	85	4	101	41	1	4	51	1.31
17047476--17047502	12	2.2	12	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17048663--17048767	30	3.5	30	84	2	122	37	22	1	38	1.66
17057830--17057875	22	2.1	22	91	0	74	34	13	19	32	1.90
17061484--17061521	16	2.3	16	86	4	58	50	0	34	15	1.45
17061844--17061908	26	2.5	26	85	9	96	35	15	26	23	1.94
17067153--17067201	25	1.9	25	87	4	71	44	0	0	55	0.99
17067196--17067221	9	2.9	9	100	0	52	57	0	7	34	1.27
17067361--17067427	22	3.0	22	74	8	62	56	0	1	41	1.08
17072201--17072248	24	1.9	26	84	16	66	31	22	0	45	1.53
17079183--17079216	17	2.0	17	94	0	59	41	20	5	32	1.76
17080560--17080653	43	2.2	43	88	0	134	24	29	18	27	1.98
17080940--17080991	21	2.5	21	80	0	59	0	46	19	34	1.50
17084541--17084587	22	2.1	22	92	0	76	59	0	0	40	0.97
17084539--17085772	32	39.5	31	66	21	264	48	4	0	46	1.29
17084539--17085127	18	28.6	20	62	26	82	49	4	0	45	1.27
17084552--17085772	44	27.8	43	67	21	490	48	4	0	46	1.30
17084649--17084721	26	2.8	24	76	15	74	53	1	1	43	1.17
17084535--17085521	54	17.5	54	66	22	353	47	5	0	46	1.30
17084552--17085772	121	9.3	138	86	8	1339	48	4	0	46	1.30
17084693--17085311	265	2.3	262	92	3	1017	47	5	0	46	1.30
17085179--17085226	18	2.6	19	73	6	53	41	2	0	56	1.11
17084934--17085714	76	10.4	74	69	18	320	47	4	0	46	1.28
17085300--17085347	18	2.6	19	73	6	53	41	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17085471--17085793	18	17.6	18	63	22	84	51	2	1	44	1.24
17085458--17085691	98	2.4	98	80	5	253	49	2	0	47	1.21
17085646--17085780	59	2.2	60	87	5	184	52	2	1	42	1.25
17088939--17088990	22	2.3	22	83	9	61	40	15	0	44	1.46
17096530--17096579	24	2.1	24	100	0	100	30	22	16	32	1.95
17098489--17098514	13	2.0	13	100	0	52	23	7	7	61	1.49
17114131--17114185	26	2.2	25	81	15	60	21	14	5	58	1.57
17114165--17114229	31	2.1	31	85	5	87	41	15	9	33	1.79
17115509--17115555	17	2.7	18	77	12	62	63	0	0	36	0.94
17115711--17115740	5	6.0	5	92	0	51	20	56	20	3	1.56
17115710--17115739	15	2.0	15	100	0	60	20	53	20	6	1.67
17121369--17122480	553	2.0	554	93	0	1911	36	13	21	28	1.92
17136222--17136270	24	2.2	23	82	10	57	8	44	2	44	1.45
17147173--17147446	136	2.0	136	97	0	521	27	16	24	31	1.96
17154654--17154692	13	2.8	13	88	7	51	38	2	10	48	1.51
17156600--17156891	145	2.0	146	93	2	498	26	15	28	29	1.96
17157168--17157225	24	2.4	23	91	8	98	15	25	32	25	1.95
17157486--17157527	16	2.6	16	88	0	57	19	4	7	69	1.31
17158437--17158504	4	17.2	4	80	11	52	14	2	7	75	1.14
17162747--17162784	11	3.5	11	85	0	58	76	0	23	0	0.79
17163926--17164493	40	13.4	41	82	6	484	35	25	14	24	1.93
17163925--17164332	82	5.0	81	84	3	487	35	24	14	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17164326--17165151	47	17.8	46	76	7	465	36	24	13	25	1.93
17164316--17165149	326	2.6	325	78	4	835	36	24	14	24	1.93
17164244--17165154	138	6.6	138	77	8	706	36	24	14	24	1.93
17163966--17165171	94	13.5	90	78	7	643	35	24	14	25	1.93
17166184--17166210	13	2.1	13	100	0	54	51	0	22	25	1.48
17166819--17166860	4	10.2	4	80	14	50	19	2	2	76	1.01
17167168--17167380	109	2.0	108	89	2	329	31	11	14	42	1.81
17174278--17174438	79	2.0	79	96	0	295	26	14	10	47	1.77
17194360--17194411	25	2.2	23	83	13	61	40	21	7	30	1.81
17196528--17196643	62	1.9	61	85	5	164	48	4	4	43	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125