genome.fa.s6.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  40  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12195774--12195809	18	2.0	18	88	0	54	66	0	11	22	1.22
12196488--12196522	18	1.9	18	88	0	52	11	28	0	60	1.32
12198953--12199040	24	3.7	24	84	3	115	30	23	23	21	1.99
12202759--12202894	24	5.8	23	85	3	166	27	22	23	25	2.00
12205174--12205211	14	2.6	15	79	4	51	39	0	15	44	1.47
12206780--12206896	24	4.9	24	85	4	157	26	21	23	29	1.99
12206788--12206896	47	2.3	48	90	4	168	27	21	22	28	1.99
12206780--12206921	71	2.0	72	86	4	198	24	20	23	31	1.98
12210789--12210841	27	1.9	28	92	3	90	24	18	26	30	1.98
12210828--12210939	24	4.7	24	82	11	124	26	22	25	25	2.00
12210823--12210939	47	2.5	48	83	6	150	26	22	24	26	2.00
12212312--12212385	33	2.2	33	100	0	148	18	22	44	13	1.85
12214253--12214283	16	1.9	16	93	0	53	61	0	16	22	1.34
12215245--12215320	37	2.1	37	89	0	116	23	21	30	25	1.99
12221305--12221702	200	2.0	200	98	0	769	33	17	15	33	1.91
12229814--12229857	23	2.0	22	86	4	61	45	15	0	38	1.47
12236674--12236738	26	2.5	26	82	7	78	43	0	1	55	1.09
12243495--12243547	26	2.0	26	85	10	72	45	0	1	52	1.11
12246972--12250371	438	7.8	438	98	0	6503	40	10	19	29	1.84
12250197--12250543	172	2.0	172	97	0	658	46	6	20	26	1.75
12249759--12250981	610	2.0	610	98	0	2347	42	9	19	28	1.82
12250369--12251418	438	2.4	438	98	0	2012	41	9	19	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12249912--12251747	610	3.0	609	82	9	1737	40	10	19	29	1.84
12251245--12251590	172	2.0	171	98	0	665	46	6	20	26	1.75
12252097--12252594	248	2.0	248	93	0	852	38	19	14	27	1.90
12253694--12253734	2	21.0	2	90	5	66	48	2	0	48	1.14
12260652--12260818	84	2.0	83	90	3	264	33	7	13	44	1.73
12277075--12277107	17	1.9	17	93	0	57	6	15	9	69	1.34
12287306--12287484	77	2.3	76	79	3	207	32	22	18	25	1.97
12289496--12289548	21	2.5	22	87	9	74	20	7	3	67	1.31
12291717--12292113	42	9.5	42	87	3	514	22	17	23	36	1.95
12293074--12293122	21	2.3	21	75	0	53	44	2	6	46	1.39
12293777--12293829	21	2.5	21	82	17	65	18	11	0	69	1.17
12294376--12294415	3	13.3	3	100	0	80	67	0	0	32	0.91
12301981--12302019	18	2.2	18	90	0	60	33	23	20	23	1.97
12314028--12314362	175	1.9	175	85	6	464	26	22	16	34	1.95
12321708--12321888	99	1.8	99	81	13	230	65	7	6	21	1.40
12321811--12321868	19	2.9	19	76	5	62	70	6	3	18	1.24
12323418--12323455	13	2.7	15	88	8	53	50	10	2	36	1.51
12326947--12327003	18	3.2	18	92	0	96	17	31	5	45	1.71
12330079--12330113	17	2.1	17	88	0	52	51	8	17	22	1.72
12330087--12330125	18	2.2	17	86	4	51	53	10	17	17	1.71
12340707--12340744	13	2.7	15	88	8	53	50	10	2	36	1.51
12341445--12341470	12	2.2	12	100	0	52	42	15	7	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12348301--12348351	24	2.1	24	96	0	93	29	11	3	54	1.54
12348301--12348363	24	2.6	24	90	5	83	31	14	4	49	1.64
12350256--12350365	48	2.3	48	92	3	168	26	13	8	51	1.69
12350256--12350353	24	4.1	24	97	2	180	25	12	7	55	1.62
12352009--12352062	17	3.4	17	68	19	53	40	0	24	35	1.55
12353655--12353703	19	2.6	19	87	9	66	20	6	4	69	1.27
12353825--12353860	18	1.9	18	88	5	54	33	8	0	58	1.28
12360011--12360058	2	24.5	2	95	4	89	52	0	47	0	1.00
12362212--12362336	62	2.0	62	88	0	187	35	14	20	30	1.92
12363613--12363645	12	2.8	12	90	0	57	0	9	0	90	0.44
12363613--12363644	6	5.7	6	92	7	50	0	9	0	90	0.45
12364428--12364483	24	2.3	24	90	0	85	44	8	8	37	1.67
12367198--12367252	25	2.3	23	82	11	67	47	14	0	38	1.45
12380628--12380730	24	4.3	24	80	4	127	29	18	20	32	1.96
12385123--12385200	24	3.3	24	84	8	106	23	17	25	33	1.96
12386355--12386400	24	1.9	24	86	0	65	60	8	26	4	1.44
12395332--12395395	25	2.6	22	80	11	56	9	43	3	43	1.52
12396878--12396944	21	3.0	22	79	16	59	8	19	5	65	1.41
12396895--12396944	23	2.2	24	86	10	70	6	18	6	70	1.29
12405529--12405563	18	1.9	18	88	0	52	28	0	14	57	1.38
12412566--12412600	18	1.9	18	88	0	52	28	0	14	57	1.38
12416394--12416423	5	6.2	5	92	7	53	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12420081--12420143	31	2.0	31	87	6	92	49	7	17	25	1.74
12421398--12421426	15	1.9	15	100	0	58	41	6	3	48	1.47
12434989--12435040	21	2.5	21	84	6	70	30	28	13	26	1.94
12441805--12442020	79	2.7	79	80	8	224	31	25	19	22	1.98
12445914--12445967	24	2.3	23	81	9	65	74	3	14	7	1.18
12449508--12449561	14	3.5	14	73	22	54	50	24	3	22	1.65
12449498--12449566	33	2.1	33	100	0	138	47	23	5	23	1.72
12449498--12449550	19	3.1	19	69	25	62	47	24	5	22	1.73
12449503--12449558	19	3.2	19	61	23	50	51	25	5	17	1.66
12456672--12456700	13	2.1	14	93	6	51	13	6	3	75	1.13
12460540--12460589	24	2.1	24	92	0	82	28	8	6	58	1.51
12463853--12463955	36	2.9	35	82	2	134	37	21	12	28	1.90
12464035--12464363	23	14.3	23	89	0	498	46	14	5	33	1.67
12471860--12471901	19	2.2	20	86	4	59	54	4	7	33	1.49
12474086--12474125	17	2.2	17	86	8	53	45	12	2	40	1.56
12474616--12474644	2	14.5	2	100	0	58	48	0	0	51	1.00
12474919--12474958	15	2.5	16	84	8	55	35	2	0	62	1.09
12474946--12475010	29	2.2	31	86	5	89	41	0	1	56	1.08
12474943--12475012	30	2.4	29	79	11	79	41	0	1	57	1.08
12474916--12475071	83	1.9	82	81	5	188	45	3	0	50	1.22
12474911--12475088	83	2.1	83	77	10	184	46	2	1	48	1.26
12476961--12477205	93	2.8	84	76	14	241	42	17	22	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12477018--12477230	93	2.3	93	86	1	302	44	15	23	16	1.86
12480090--12480135	24	2.0	24	83	12	60	41	4	10	43	1.59
12489343--12489385	18	2.4	19	85	11	56	60	0	2	37	1.10
12490299--12490343	3	15.7	3	86	9	67	66	0	33	0	0.92
12490845--12490887	21	2.0	21	86	0	59	32	20	16	30	1.95
12491693--12491756	21	3.0	21	95	0	110	26	17	20	35	1.94
12492812--12492845	5	6.4	5	87	12	50	17	2	0	79	0.86
12492812--12492846	17	2.1	16	94	5	61	17	2	0	80	0.84
12493839--12493911	8	8.4	9	73	14	64	71	0	27	1	0.95
12493837--12493898	15	4.2	15	81	2	63	72	0	27	0	0.85
12494402--12494442	21	2.0	21	95	0	73	29	24	17	29	1.97
12494737--12494820	23	3.9	22	71	15	77	36	1	3	58	1.23
12494832--12494878	19	2.6	18	80	6	58	29	2	0	68	1.02
12494832--12494878	18	2.6	18	83	6	60	29	2	0	68	1.02
12508790--12508847	29	2.0	29	93	0	98	20	31	24	24	1.98
12523071--12523196	27	4.7	27	82	9	123	31	23	19	25	1.98
12533542--12533593	20	2.6	20	100	0	104	32	11	17	38	1.85
12541804--12541916	60	1.9	59	83	8	149	38	8	1	50	1.44
12544609--12544640	15	2.1	16	94	5	57	0	25	0	75	0.81
12544612--12544652	20	2.0	21	90	4	66	2	19	0	78	0.87
12546994--12547032	16	2.4	16	82	0	51	25	33	30	10	1.89
12547441--12547481	19	2.1	20	86	4	57	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12548723--12548878	29	5.3	30	75	8	133	35	22	8	33	1.85
12548727--12548915	88	2.1	89	84	2	238	37	21	8	32	1.84
12548727--12548915	30	6.4	29	75	8	143	37	21	8	32	1.84
12552229--12552291	30	2.1	30	93	0	108	38	4	42	14	1.66
12554661--12554695	6	6.0	6	86	6	54	88	0	11	0	0.51
12554658--12554695	11	3.4	11	89	7	58	86	0	13	0	0.56
12554656--12554693	12	3.0	12	92	7	58	86	0	13	0	0.56
12555532--12555724	49	3.9	49	77	6	167	38	15	24	21	1.92
12556000--12556543	44	12.3	45	79	7	537	29	22	19	28	1.98
12556000--12556543	174	3.1	175	84	7	638	29	22	19	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125