genome.fa.s6.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  17  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5428532--5428570	17	2.3	17	86	0	51	71	0	2	25	0.98
5428543--5428582	16	2.4	17	84	16	57	67	0	0	32	0.91
5428520--5428599	10	8.6	10	67	15	55	66	1	2	30	1.13
5428523--5428700	9	19.1	9	68	20	75	61	2	4	31	1.28
5428564--5428676	58	2.0	57	86	6	158	58	2	5	33	1.35
5428564--5428694	58	2.3	55	81	7	138	59	3	5	32	1.35
5428861--5428918	19	3.1	19	71	0	62	32	3	3	60	1.30
5429053--5429243	88	2.2	88	81	5	208	30	9	23	36	1.86
5433144--5433171	3	9.3	3	100	0	56	0	0	64	35	0.94
5441406--5441518	56	2.0	56	100	0	226	52	12	3	31	1.56
5454613--5454685	23	3.3	23	77	12	73	43	10	13	31	1.79
5454691--5454732	22	1.9	22	90	9	68	42	11	11	33	1.78
5460947--5460995	11	4.5	11	81	0	53	26	14	2	57	1.48
5463320--5463349	8	3.8	8	95	0	51	50	0	0	50	1.00
5464378--5464429	27	1.9	27	88	0	77	50	11	11	26	1.73
5466678--5466715	17	2.2	17	100	0	76	47	0	0	52	1.00
5466721--5466757	19	2.0	19	89	5	58	40	0	5	54	1.24
5472767--5472827	29	2.1	30	82	14	74	24	8	11	55	1.62
5473400--5473439	19	2.2	18	86	4	53	30	5	5	60	1.40
5473920--5473977	30	1.9	31	85	3	82	37	5	10	46	1.60
5479703--5480023	72	4.5	72	90	0	498	55	14	6	23	1.61
5480390--5480459	18	3.9	18	85	7	106	40	11	8	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5483615--5483749	40	3.4	38	73	12	96	30	28	20	21	1.98
5483647--5483750	37	2.7	38	76	5	93	31	26	19	22	1.97
5484543--5484594	25	2.1	24	86	10	70	5	17	1	75	1.10
5489740--5489874	40	3.4	38	73	12	96	30	28	20	21	1.98
5489772--5489875	37	2.7	38	76	5	93	31	26	19	22	1.97
5490743--5490781	3	13.3	3	89	5	62	61	2	0	35	1.10
5490742--5490825	8	9.4	9	81	11	50	54	1	1	42	1.15
5492715--5492755	21	2.0	21	85	4	57	48	0	0	51	1.00
5498407--5498511	51	2.1	50	92	1	174	26	10	20	42	1.84
5501603--5501666	32	2.0	31	85	14	87	60	6	0	32	1.21
5502459--5502498	18	2.2	18	100	0	80	42	5	0	52	1.23
5502619--5502660	21	2.0	21	81	9	50	69	4	2	23	1.20
5506121--5506151	15	2.1	15	100	0	62	12	19	19	48	1.81
5509373--5509410	9	4.2	9	86	0	58	47	10	10	31	1.72
5513509--5513550	22	2.0	22	85	4	59	61	0	4	33	1.17
5516748--5516803	29	2.0	28	85	3	76	32	3	0	64	1.11
5516864--5516908	22	2.0	24	86	8	67	20	4	2	73	1.11
5517853--5517892	16	2.5	16	100	0	80	27	17	12	42	1.85
5519199--5519250	26	2.0	27	85	11	72	3	44	25	26	1.71
5520252--5520286	15	2.2	16	95	5	63	42	0	2	54	1.15
5521541--5521581	17	2.3	18	91	4	66	26	9	43	19	1.82
5525233--5525279	6	7.8	6	86	9	69	17	2	14	65	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5525353--5525409	26	2.2	26	83	0	69	59	7	0	33	1.24
5529522--5529588	27	2.5	27	76	13	75	25	0	7	67	1.17
5530458--5530504	22	2.1	23	84	7	62	8	6	6	78	1.08
5532017--5532065	23	2.0	25	85	14	68	44	0	4	51	1.20
5533922--5533968	14	3.1	15	75	19	53	70	0	0	29	0.88
5533910--5533981	23	3.2	22	77	21	62	69	0	0	30	0.89
5535211--5535242	15	2.2	14	94	5	55	40	0	0	59	0.97
5535211--5535242	7	4.4	7	92	7	55	40	0	0	59	0.97
5537072--5537112	18	2.2	20	86	8	59	68	0	0	31	0.90
5545938--5546041	17	6.1	17	86	2	145	36	0	3	58	1.23
5545940--5546049	6	18.8	6	72	9	75	38	0	3	57	1.23
5545938--5546041	34	3.0	34	90	2	163	36	0	3	58	1.23
5547790--5548098	29	10.8	29	74	14	180	34	25	3	35	1.75
5547815--5548100	57	5.0	56	75	13	235	34	25	3	36	1.75
5548255--5548301	19	2.5	19	75	6	51	27	10	8	53	1.64
5553766--5553803	16	2.2	18	90	9	62	57	0	0	42	0.98
5562501--5562531	2	15.5	2	93	0	53	51	3	0	45	1.17
5564800--5564832	14	2.3	15	89	5	50	33	0	15	51	1.43
5566815--5566873	22	2.6	23	81	5	75	45	3	1	49	1.28
5569314--5569381	20	3.2	20	67	28	59	50	1	13	35	1.51
5569383--5569490	12	9.0	12	70	22	68	56	0	4	37	1.26
5569306--5569403	44	2.2	44	100	0	196	50	2	11	36	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5569387--5569490	22	4.3	23	72	16	77	55	0	4	38	1.27
5570710--5570913	29	7.0	29	70	12	148	32	27	5	33	1.81
5570702--5570997	59	5.0	58	86	5	373	32	28	6	33	1.83
5570702--5570999	117	2.5	118	86	7	417	31	27	6	33	1.83
5570788--5570947	29	5.5	28	71	18	130	34	26	6	32	1.82
5570966--5571025	28	2.1	28	84	6	77	31	26	11	30	1.92
5570785--5571035	29	8.6	29	69	16	85	32	27	7	32	1.85
5571254--5571447	97	2.0	97	84	6	250	28	16	14	40	1.88
5573278--5573338	22	2.8	22	85	7	72	70	1	13	14	1.24
5573304--5573333	15	1.9	16	93	6	53	70	0	13	16	1.18
5575841--5575865	13	1.9	13	100	0	50	52	0	8	40	1.31
5586863--5586898	18	1.9	19	88	5	56	16	19	0	63	1.30
5586957--5587015	25	2.4	25	97	0	109	20	18	3	57	1.54
5588563--5588603	22	1.9	22	85	5	57	31	4	2	60	1.30
5589892--5589953	18	3.2	18	75	16	61	37	9	4	48	1.57
5589892--5589953	20	3.2	19	82	8	72	37	9	4	48	1.57
5589930--5589961	16	2.0	16	93	0	55	37	12	3	46	1.57
5589909--5589969	16	3.4	18	75	13	54	32	9	6	50	1.61
5592324--5592356	6	5.7	6	92	7	50	87	0	9	3	0.63
5592319--5592357	17	2.3	17	81	0	51	84	0	7	7	0.77
5593091--5593140	27	1.9	25	84	8	64	12	2	14	72	1.22
5593382--5593438	28	2.0	29	82	3	71	31	5	15	47	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5593377--5593441	28	2.4	27	80	10	69	30	4	16	47	1.67
5593496--5593564	29	2.4	29	80	9	70	50	1	1	46	1.19
5593598--5593659	29	2.2	28	85	5	88	62	1	0	35	1.05
5593911--5593948	7	5.4	7	96	0	67	0	52	0	47	1.00
5595980--5596333	175	2.0	174	85	6	475	25	14	20	38	1.91
5596365--5596435	36	2.0	36	83	5	90	32	15	21	30	1.94
5596647--5596999	175	2.0	175	85	7	486	25	13	21	38	1.91
5595648--5597491	666	2.8	666	93	1	3068	27	14	21	36	1.93
5597031--5597101	36	2.0	36	86	5	99	33	15	21	29	1.94
5597565--5597661	36	2.8	35	76	7	92	29	15	22	31	1.95
5597936--5598126	97	1.9	100	80	5	219	24	17	25	33	1.96
5614959--5615001	7	6.1	7	100	0	86	16	41	13	27	1.86
5615003--5615050	14	3.5	13	86	8	51	54	27	0	18	1.44
5615003--5615050	21	2.3	21	81	0	60	54	27	0	18	1.44
5615012--5615050	7	5.6	7	90	0	60	56	25	0	17	1.41
5616392--5616429	13	3.0	13	84	3	51	26	5	18	50	1.68
5624575--5624605	15	2.1	15	100	0	62	67	0	0	32	0.91
5627787--5627814	14	2.0	14	100	0	56	50	0	7	42	1.30
5636964--5637039	37	2.1	37	89	0	116	26	36	10	26	1.89
5657008--5657050	23	1.9	23	85	4	61	53	2	0	44	1.13
5657042--5657081	16	2.5	17	80	19	50	35	5	0	60	1.19
5658614--5658678	29	2.3	28	80	15	80	49	1	1	47	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5662413--5662592	52	3.5	52	93	0	315	26	14	23	35	1.93
5662573--5662628	18	3.1	18	100	0	112	21	23	21	33	1.97
5662609--5662737	52	2.5	52	93	0	213	24	16	24	35	1.95
5662469--5662732	140	1.9	140	91	0	438	25	16	23	35	1.95
5664080--5664115	16	2.2	17	90	5	56	27	2	0	69	1.02
5664731--5664882	79	1.9	79	89	0	232	48	14	6	30	1.69
5665068--5665137	19	4.0	18	81	5	74	42	2	1	52	1.24
5665077--5665137	16	3.7	16	74	8	59	42	3	1	52	1.27
5665204--5665245	15	2.8	15	85	10	59	54	2	14	28	1.52
5669245--5669307	13	4.8	13	76	0	63	30	20	17	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125