genome.fa.s6.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  18  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5669245--5669304	26	2.3	26	94	0	102	30	21	16	31	1.96
5671532--5671716	93	2.0	93	96	0	343	24	11	13	50	1.74
5674255--5674297	19	2.3	19	79	0	50	37	11	4	46	1.61
5682983--5683038	27	2.1	27	89	0	85	32	23	12	32	1.92
5688096--5688132	3	12.3	3	100	0	74	67	0	32	0	0.91
5690190--5690379	64	3.0	64	85	6	280	42	11	19	26	1.84
5692272--5692320	22	2.1	24	85	7	66	32	6	4	57	1.42
5696857--5696903	19	2.5	18	78	18	51	34	8	0	57	1.29
5713243--5713292	6	8.2	6	97	2	91	66	0	18	16	1.26
5715450--5715497	25	1.9	25	86	0	69	33	22	10	33	1.88
5717726--5717758	14	2.4	14	85	5	50	45	6	30	18	1.73
5720202--5720252	21	2.3	22	86	6	68	7	15	0	76	1.00
5720202--5720265	33	1.9	32	81	12	76	9	15	0	75	1.05
5720225--5720290	10	6.3	10	78	5	51	10	7	1	80	0.97
5720225--5720290	11	6.3	11	77	11	59	10	7	1	80	0.97
5720221--5720273	10	5.0	10	78	13	61	15	9	0	75	1.04
5720202--5720273	22	3.3	22	80	9	67	11	13	0	75	1.06
5721219--5721256	6	6.5	6	85	14	53	68	0	2	28	1.03
5721219--5721265	17	2.7	18	90	9	71	70	0	2	27	0.99
5723441--5723469	13	2.3	13	94	5	51	72	0	0	27	0.85
5723436--5723475	18	2.2	18	86	0	53	75	2	0	22	0.93
5724556--5724601	24	1.9	23	86	8	65	56	6	4	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5733856--5733893	14	2.7	14	87	0	58	44	21	7	26	1.79
5734652--5734715	3	20.7	3	75	12	58	60	0	3	35	1.12
5734654--5734709	27	2.0	28	86	3	78	58	0	3	37	1.15
5734652--5734715	24	2.7	24	80	7	69	60	0	3	35	1.12
5735761--5736079	29	10.8	30	73	12	207	33	24	3	38	1.73
5735761--5736005	59	4.2	59	85	4	298	34	22	3	40	1.70
5735765--5736079	117	2.7	117	81	4	323	33	23	3	39	1.73
5735761--5736079	59	5.4	58	82	7	295	33	24	3	38	1.73
5735968--5736158	59	3.3	59	79	9	169	32	24	8	34	1.85
5736067--5736158	28	3.2	28	95	3	157	29	23	13	33	1.92
5737779--5737823	23	2.0	23	90	0	72	44	2	2	51	1.26
5737779--5737823	6	7.8	6	82	9	58	44	2	2	51	1.26
5737753--5737824	11	6.5	11	79	3	72	40	1	1	56	1.16
5737750--5737841	17	5.6	16	75	8	78	43	1	1	54	1.14
5738625--5738672	18	2.7	18	87	12	64	43	8	0	47	1.33
5738646--5738708	18	3.6	18	71	14	51	47	4	1	46	1.33
5739774--5740188	29	14.1	29	73	10	238	33	27	5	34	1.79
5739784--5740182	30	13.6	30	74	10	261	33	26	5	34	1.78
5739784--5740050	89	3.0	89	83	4	310	34	27	3	34	1.74
5739784--5740095	59	5.3	57	78	7	227	34	26	3	35	1.75
5740053--5740211	29	5.4	30	70	15	127	31	25	9	33	1.88
5741970--5742047	34	2.3	33	82	8	86	39	1	2	56	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5741970--5742048	17	4.7	16	78	9	77	39	1	2	56	1.21
5742228--5743094	434	2.0	433	98	0	1680	35	19	15	29	1.93
5743634--5743658	9	2.8	9	100	0	50	76	0	24	0	0.80
5744390--5744658	29	9.1	30	67	23	90	31	27	5	35	1.79
5744348--5744665	59	5.4	59	86	3	392	30	28	5	34	1.81
5744410--5744509	29	3.5	29	71	23	95	35	27	3	35	1.72
5746742--5746775	17	1.9	18	88	5	52	38	26	5	29	1.80
5748198--5748228	16	1.9	16	93	0	53	32	0	0	67	0.91
5748743--5748785	22	2.0	22	85	0	59	23	11	9	55	1.64
5749709--5749772	32	2.0	32	96	0	119	46	29	6	17	1.72
5750509--5750729	30	7.5	28	66	27	79	35	4	27	33	1.76
5750511--5750866	59	6.2	57	81	12	394	35	3	27	33	1.74
5750535--5750699	29	5.6	28	66	25	76	34	4	28	32	1.77
5750683--5750832	50	2.8	50	83	10	158	36	2	28	33	1.69
5750624--5750831	109	1.9	109	94	0	371	35	1	28	33	1.69
5750735--5750828	30	3.2	30	72	14	95	37	2	25	35	1.68
5751146--5751209	32	2.0	33	84	9	87	60	3	12	23	1.46
5753195--5753232	18	2.1	18	85	9	51	36	7	15	39	1.77
5753784--5753818	13	2.7	13	95	0	61	34	5	20	40	1.76
5765538--5765589	17	2.9	17	78	15	52	28	0	1	69	0.99
5765547--5765583	20	1.9	20	94	5	67	27	0	0	72	0.84
5768740--5768800	29	2.0	31	87	6	90	52	6	4	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5772179--5772361	23	8.5	22	73	13	157	46	23	19	10	1.81
5772259--5772361	44	2.3	44	96	0	188	45	25	18	10	1.81
5775896--5775942	25	2.0	23	83	8	58	31	4	6	57	1.43
5781937--5781982	25	1.9	25	86	8	69	34	4	6	54	1.46
5788797--5788856	26	2.3	27	85	8	79	61	1	5	31	1.27
5788801--5788858	25	2.2	28	79	14	70	63	1	5	29	1.25
5789359--5789411	19	2.7	20	76	5	54	54	0	0	45	0.99
5789810--5789853	21	2.1	21	86	0	61	43	2	4	50	1.35
5793570--5793619	21	2.4	21	80	6	57	28	16	24	32	1.96
5795610--5795716	49	2.2	49	82	0	124	29	27	17	25	1.98
5807125--5807213	44	2.0	44	95	2	162	41	20	5	32	1.75
5808841--5809103	111	2.4	111	83	1	321	29	23	27	19	1.98
5825513--5825570	30	1.9	30	92	0	98	63	13	8	13	1.51
5825516--5825561	13	3.0	16	72	21	53	63	10	10	15	1.53
5826488--5826541	15	3.7	15	77	5	56	31	0	0	68	0.90
5826526--5826569	18	2.4	19	80	7	54	34	4	0	61	1.16
5826794--5826845	18	2.7	19	79	8	52	55	0	1	42	1.10
5826758--5826833	23	3.3	23	71	20	59	59	1	3	35	1.24
5827638--5827707	14	5.1	14	72	6	54	30	1	22	45	1.61
5827648--5827725	40	2.0	40	87	2	113	26	1	28	43	1.63
5829373--5829434	30	2.1	30	100	0	124	19	0	48	32	1.49
5832552--5832597	2	23.0	2	100	0	92	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5842689--5842732	16	2.7	16	85	3	61	47	18	0	34	1.49
5852650--5852723	32	2.2	34	90	4	116	28	20	0	51	1.48
5854438--5854488	26	2.0	27	85	14	72	43	0	1	54	1.11
5858617--5858673	24	2.4	24	87	0	87	29	26	19	24	1.98
5861238--5861425	40	4.7	40	78	7	186	20	22	17	39	1.92
5861237--5861425	80	2.4	80	83	2	247	21	22	17	39	1.93
5863549--5863623	24	3.1	23	84	7	96	26	24	24	25	2.00
5871085--5871201	62	1.9	59	81	8	137	42	1	5	49	1.37
5877337--5877387	24	2.1	23	85	7	66	52	9	27	9	1.65
5885410--5886445	81	12.8	81	89	1	1471	26	19	24	29	1.98
5887581--5887650	22	3.3	20	82	9	86	7	2	20	70	1.24
5887581--5887641	22	2.8	21	88	11	88	6	3	19	70	1.24
5887581--5887650	20	3.4	19	78	18	68	7	2	20	70	1.24
5887593--5887649	21	2.7	21	84	13	64	8	3	15	71	1.24
5887666--5887714	12	4.2	12	84	2	55	8	2	14	75	1.12
5887643--5887714	24	3.1	24	80	6	85	9	2	15	72	1.22
5887637--5887728	21	4.2	21	73	20	71	10	2	14	72	1.20
5887666--5887740	12	6.7	12	75	13	52	10	2	13	73	1.20
5887666--5887784	56	2.1	56	84	3	159	10	3	15	70	1.28
5887720--5887786	21	3.0	21	70	12	55	10	4	16	68	1.34
5890605--5890630	6	4.3	6	100	0	52	0	0	84	15	0.62
5891493--5891581	40	2.2	40	97	0	169	31	23	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5891655--5891724	3	23.0	3	79	2	77	30	41	0	28	1.56
5891678--5891734	28	2.0	28	93	0	96	24	38	1	35	1.66
5915024--5915063	21	1.9	22	90	10	66	72	10	2	15	1.21
5915298--5915373	19	3.7	21	84	6	102	63	23	6	6	1.43
5917046--5917140	46	2.1	46	91	0	154	62	9	5	23	1.46
5920119--5920187	18	3.9	18	86	9	88	17	20	31	30	1.95
5926665--5926717	27	2.0	27	85	7	72	24	35	20	18	1.95
5931840--5931903	21	3.0	21	80	6	67	7	3	17	71	1.22
5931841--5931911	21	3.4	21	77	9	65	8	2	16	71	1.22
5931916--5931957	22	1.9	22	85	0	57	2	2	19	76	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125