genome.fa.s6.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  88  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27035301--27035336	18	2.0	18	88	0	54	27	0	2	69	1.02
27036760--27036796	17	2.2	17	90	4	58	29	0	0	70	0.88
27036754--27036796	16	2.6	16	85	3	59	30	0	0	69	0.88
27039673--27039766	37	2.4	38	81	8	102	28	29	21	20	1.98
27039705--27039808	37	2.7	38	79	5	102	32	25	18	23	1.97
27039911--27039949	6	6.5	6	84	0	51	20	30	2	46	1.64
27042803--27042840	16	2.2	18	90	9	62	57	2	0	39	1.12
27049984--27050021	16	2.2	18	90	9	62	57	2	0	39	1.12
27057973--27058181	88	2.4	88	82	8	273	33	20	10	35	1.87
27058246--27058326	32	2.6	30	74	16	85	59	1	1	38	1.13
27058248--27058326	31	2.6	29	75	18	88	59	1	1	37	1.14
27058651--27058718	34	2.0	34	88	0	100	30	27	10	30	1.90
27062801--27062846	25	1.9	24	91	8	76	43	6	0	50	1.28
27063970--27064003	17	1.9	18	88	5	52	41	2	2	52	1.31
27070101--27070130	15	1.9	16	93	6	53	63	10	0	26	1.26
27076231--27076260	3	9.7	3	92	7	51	0	0	66	33	0.92
27076280--27076388	27	4.0	27	98	0	200	11	20	29	39	1.86
27076286--27076389	15	7.5	15	66	18	73	10	19	31	38	1.86
27076379--27076502	63	2.0	63	85	0	167	25	21	23	29	1.99
27082820--27082929	35	3.2	34	71	19	102	32	5	9	52	1.56
27082958--27082997	2	20.0	2	100	0	80	50	0	0	50	1.00
27101284--27101355	34	2.1	34	84	5	92	54	5	0	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27102528--27102676	81	1.8	81	91	0	244	35	20	23	20	1.96
27102459--27102708	41	6.1	41	82	6	244	36	18	23	20	1.95
27103015--27103100	31	2.9	29	76	11	84	41	12	10	34	1.78
27103015--27103103	29	3.0	29	77	11	90	41	14	10	33	1.79
27104719--27104755	18	2.1	18	94	0	65	32	24	0	43	1.55
27104876--27104912	18	2.1	18	89	0	56	32	21	0	45	1.52
27106372--27106524	43	3.6	43	83	0	207	26	17	27	28	1.98
27106425--27106620	107	1.8	107	85	2	277	26	16	25	32	1.96
27110109--27110160	22	2.3	23	83	9	63	48	5	3	42	1.45
27110345--27110392	24	2.0	24	83	0	60	56	2	0	41	1.11
27115773--27115817	22	2.1	21	83	4	54	68	11	2	17	1.29
27126933--27127032	11	9.3	11	78	4	78	40	1	35	24	1.62
27126960--27127032	33	2.2	33	85	0	92	39	0	35	24	1.56
27126933--27127032	22	4.6	22	76	2	87	40	1	35	24	1.62
27128945--27129154	89	2.4	89	82	7	241	39	18	4	38	1.72
27128930--27129305	59	6.3	61	79	9	183	39	18	3	37	1.70
27128930--27129234	59	5.1	59	79	6	244	40	17	4	37	1.70
27128930--27129305	30	12.6	30	74	8	241	39	18	3	37	1.70
27132781--27132816	18	2.0	18	89	10	56	33	0	0	66	0.92
27139424--27139543	58	2.1	58	93	3	206	32	0	20	47	1.50
27140620--27140649	15	1.9	16	93	6	53	30	0	3	66	1.07
27140610--27140658	20	2.5	19	81	12	55	30	0	6	63	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27140643--27140682	21	1.9	21	94	0	71	30	0	12	57	1.36
27141063--27141111	16	3.2	16	73	26	61	59	8	0	32	1.27
27141144--27141244	30	3.4	30	70	8	98	34	5	11	47	1.65
27142404--27142488	43	2.0	43	83	4	109	29	10	12	47	1.76
27143088--27143133	21	2.2	21	84	7	58	26	34	10	28	1.90
27146699--27146755	27	2.1	28	83	9	73	59	10	1	28	1.40
27146759--27146813	7	7.7	7	88	10	58	0	34	0	65	0.93
27146790--27146843	4	13.5	4	85	14	76	1	22	0	75	0.89
27146770--27146847	13	5.8	13	84	11	79	1	26	0	71	0.93
27154420--27154626	29	7.1	29	73	16	162	39	3	25	31	1.74
27154376--27154626	58	4.3	58	85	7	307	38	4	26	29	1.77
27154420--27154768	58	5.9	59	82	7	229	40	2	22	34	1.69
27154592--27154776	30	6.2	29	81	9	187	41	1	17	40	1.59
27154592--27154786	60	3.3	59	79	11	218	40	1	17	40	1.59
27156963--27157648	92	7.5	92	95	0	1156	32	16	15	34	1.91
27157768--27157859	48	1.9	48	86	0	130	13	25	19	42	1.87
27164797--27164976	90	2.0	90	98	0	351	32	20	15	32	1.93
27169427--27169575	28	5.1	29	67	25	73	38	2	26	33	1.68
27169418--27169632	57	3.7	57	81	3	209	39	2	26	31	1.69
27169477--27169641	29	5.8	28	70	16	88	41	1	26	31	1.63
27169600--27169783	30	6.1	30	78	7	169	41	1	17	39	1.60
27169598--27169796	60	3.3	58	77	9	193	41	1	18	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27169611--27169782	90	1.9	90	87	2	256	41	1	18	38	1.58
27170996--27171045	22	2.3	22	89	0	73	34	2	2	62	1.18
27171006--27171055	22	2.3	22	86	6	66	42	2	2	54	1.23
27171661--27171748	17	5.3	16	82	8	97	52	2	1	44	1.21
27171677--27171748	6	13.0	6	72	16	66	52	2	1	43	1.24
27171677--27171748	11	6.5	11	74	16	60	52	2	1	43	1.24
27172420--27172651	78	3.0	78	90	1	360	30	13	25	30	1.94
27174471--27174517	24	2.0	24	86	0	67	21	34	2	42	1.65
27174495--27174532	17	2.2	18	90	4	60	23	26	2	47	1.65
27179671--27179699	2	14.5	2	100	0	58	48	51	0	0	1.00
27179878--27179924	24	2.0	24	83	8	60	21	34	2	42	1.65
27179902--27179939	17	2.2	18	85	4	51	23	28	2	44	1.67
27180785--27180860	30	2.5	30	75	8	91	35	15	15	32	1.90
27182414--27182451	19	2.0	20	84	5	51	57	10	2	28	1.45
27188370--27188399	3	10.0	3	100	0	60	33	0	33	33	1.58
27189514--27189538	9	2.8	9	100	0	50	80	8	12	0	0.92
27190408--27190490	29	2.9	27	81	12	103	51	9	9	28	1.66
27190935--27191058	28	4.2	29	73	13	103	49	10	10	29	1.71
27190935--27191060	59	2.2	58	84	8	166	49	10	10	30	1.70
27196663--27196717	28	2.0	28	82	7	67	36	1	5	56	1.33
27196691--27196781	6	15.0	6	74	11	69	48	3	1	47	1.25
27196697--27196756	31	1.9	31	89	0	93	41	3	1	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27196682--27196755	17	4.6	16	80	11	80	39	2	1	56	1.22
27198238--27198301	33	2.0	33	82	8	80	14	18	12	54	1.70
27198346--27198682	162	2.1	162	89	1	507	24	17	14	43	1.86
27198814--27199070	59	4.4	59	88	3	367	30	28	5	35	1.80
27198814--27199067	117	2.2	118	90	2	397	30	28	5	36	1.79
27198844--27199062	30	7.5	27	68	20	95	31	27	4	36	1.77
27198959--27199070	29	3.8	28	70	17	75	29	32	6	32	1.82
27198814--27199104	117	2.5	117	86	2	352	29	29	5	35	1.81
27200792--27200817	8	3.2	8	100	0	52	23	11	0	65	1.25
27210901--27210939	18	2.1	19	85	4	53	33	5	7	53	1.51
27211555--27211657	30	3.4	30	75	14	95	38	2	21	36	1.68
27213416--27213662	116	2.1	115	88	2	370	25	19	26	29	1.98
27213608--27213905	78	3.8	78	82	5	343	27	14	22	34	1.94
27213629--27213906	38	7.1	39	66	11	113	26	16	21	35	1.94
27213748--27213874	38	3.3	38	69	12	114	29	16	19	34	1.94
27225976--27226190	30	7.2	29	71	13	91	45	4	18	31	1.68
27226007--27226175	59	2.8	60	82	3	198	46	3	19	30	1.67
27225977--27226177	60	3.3	60	78	6	185	45	3	18	31	1.68
27231107--27231167	19	3.2	19	84	13	65	72	4	4	18	1.21
27231883--27231917	16	2.2	16	89	0	52	60	11	2	25	1.45
27232180--27232263	45	2.0	41	83	9	105	52	3	1	42	1.26
27236154--27236197	22	2.0	22	100	0	88	31	9	4	54	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27236823--27236900	20	4.2	19	75	18	74	65	23	6	5	1.36
27236832--27236899	35	2.0	34	88	2	100	66	20	7	5	1.38
27236830--27236900	19	3.8	19	75	19	78	66	21	7	5	1.37
27236892--27236927	18	2.1	18	89	5	56	69	11	8	11	1.37
27236914--27236982	22	3.3	21	78	9	70	69	18	5	5	1.29
27236932--27236983	21	2.5	21	84	9	70	69	23	5	1	1.20
27236870--27236982	20	5.7	20	71	13	72	67	18	7	7	1.38
27251818--27252112	146	2.0	146	100	0	590	44	10	10	35	1.72
27265493--27265628	70	1.9	70	83	0	173	19	23	30	25	1.98
27275210--27275361	41	3.7	41	80	8	168	38	15	28	17	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125