genome.fa.s6.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  20  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6182310--6182377	18	3.6	18	79	16	59	58	10	0	30	1.31
6184305--6184548	78	3.2	77	88	3	341	40	8	8	42	1.65
6189226--6189296	24	3.1	23	76	6	63	61	0	18	19	1.34
6189284--6189352	33	2.3	30	79	16	79	56	0	24	18	1.42
6199649--6199696	16	3.3	14	78	16	53	56	2	0	41	1.11
6200698--6200773	26	3.0	26	78	14	63	35	0	0	64	0.94
6205946--6206004	24	2.5	24	81	10	59	37	5	0	57	1.21
6205997--6206088	15	6.2	15	71	13	57	50	0	0	50	1.00
6206043--6206118	37	2.1	37	90	5	118	50	1	0	48	1.09
6206274--6206313	16	2.5	16	91	0	71	27	32	5	35	1.79
6214035--6214113	35	2.3	36	82	8	101	39	18	8	32	1.82
6215228--6215293	22	2.9	23	73	11	64	50	9	3	37	1.50
6215565--6215611	24	2.0	24	95	0	85	29	8	8	53	1.61
6215892--6215941	20	2.4	21	84	15	61	36	24	6	34	1.80
6217058--6217099	22	1.9	22	85	0	57	64	21	9	4	1.42
6219012--6219092	35	2.2	34	80	10	81	29	0	7	62	1.22
6219146--6219228	24	3.4	23	71	21	62	31	0	7	61	1.23
6228678--6228703	12	2.2	12	100	0	52	15	23	7	53	1.67
6229686--6229729	22	2.0	21	86	4	61	36	0	2	61	1.09
6233669--6234638	483	2.0	483	91	1	1579	24	24	15	35	1.94
6234766--6238260	888	4.0	858	83	7	3839	26	23	15	34	1.94
6236140--6238271	885	2.4	884	85	2	2825	26	23	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6245852--6245899	22	2.2	22	92	0	78	56	6	12	25	1.59
6248394--6248425	16	1.9	17	93	6	57	12	0	3	84	0.74
6250006--6250053	23	2.0	24	88	4	71	27	12	16	43	1.84
6251145--6251185	13	2.9	15	75	14	50	58	7	4	29	1.46
6251395--6251419	11	2.3	11	100	0	50	8	8	8	76	1.18
6268783--6268841	25	2.4	25	88	0	82	16	11	40	30	1.85
6273405--6273453	22	2.5	18	77	22	62	40	4	20	34	1.71
6273413--6273458	22	2.1	22	100	0	92	45	4	17	32	1.68
6273609--6273647	6	6.5	6	93	0	69	48	0	30	20	1.50
6274626--6274655	6	4.8	6	92	8	51	33	0	0	66	0.92
6274613--6274655	13	3.4	13	87	9	54	34	0	2	62	1.08
6275251--6275339	36	2.5	37	79	3	101	40	4	24	30	1.75
6276322--6276595	81	3.4	80	80	7	241	35	22	14	26	1.93
6284821--6284861	18	2.2	19	87	12	59	21	2	9	65	1.34
6291853--6291877	1	25.0	1	100	0	50	0	0	0	100	0.00
6297775--6297813	16	2.4	16	87	8	53	53	0	5	41	1.23
6297835--6297869	17	2.1	16	89	5	52	51	0	0	48	1.00
6303495--6303520	13	2.0	13	100	0	52	30	0	0	69	0.89
6304327--6304351	7	3.6	7	100	0	50	56	0	0	44	0.99
6304817--6304866	21	2.3	22	77	19	52	46	4	2	48	1.32
6317545--6317593	25	2.0	24	92	4	80	55	2	0	42	1.11
6318923--6318962	13	2.9	13	82	13	53	65	2	0	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6318929--6318963	15	2.3	15	95	0	61	71	2	0	25	1.00
6319883--6320176	111	2.6	111	89	1	419	36	23	13	26	1.92
6321458--6321495	20	1.9	20	94	0	67	31	0	26	42	1.56
6323166--6323190	11	2.3	11	100	0	50	60	0	0	40	0.97
6323151--6323242	27	3.1	28	75	20	82	61	6	2	29	1.32
6334529--6334563	2	17.5	2	87	0	52	45	0	2	51	1.16
6340373--6340427	20	2.7	21	78	16	62	40	10	0	49	1.38
6344580--6344617	15	2.5	15	100	0	76	47	28	0	23	1.52
6344622--6344656	14	2.4	15	90	4	54	48	31	5	14	1.67
6344679--6344717	10	3.8	10	82	3	51	12	33	30	23	1.92
6344730--6344827	13	7.3	13	76	8	90	19	25	21	33	1.97
6344736--6344815	7	11.7	7	73	5	74	18	27	22	31	1.97
6344716--6344815	34	3.0	33	86	4	146	20	27	21	32	1.97
6351888--6351917	15	2.0	15	100	0	60	46	33	0	20	1.51
6351893--6351960	20	3.3	20	89	4	109	50	33	1	14	1.53
6351935--6351969	14	2.4	15	90	4	54	48	31	5	14	1.67
6351992--6352030	10	3.8	10	86	3	51	12	33	30	23	1.92
6352020--6352158	7	20.7	7	72	11	67	17	24	23	34	1.96
6352020--6352157	20	6.6	20	79	12	107	18	24	23	34	1.96
6352018--6352071	27	2.0	27	92	0	90	18	29	22	29	1.97
6352020--6352157	67	2.1	67	92	0	231	18	24	23	34	1.96
6352018--6352157	47	3.0	47	82	2	156	18	25	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6357117--6357170	20	2.6	21	80	16	60	40	11	0	48	1.39
6359267--6359321	23	2.5	22	91	8	94	47	23	7	21	1.76
6359987--6360019	17	1.9	17	93	0	57	51	6	3	39	1.42
6361318--6361358	14	2.9	14	88	0	55	48	0	0	51	1.00
6361468--6361512	14	3.1	14	78	6	54	62	4	0	33	1.15
6361462--6361512	15	3.5	15	75	5	59	62	5	0	31	1.19
6372050--6372078	6	4.8	6	100	0	58	65	0	34	0	0.93
6383420--6383566	43	3.5	42	82	2	152	30	26	17	25	1.97
6383460--6383566	43	2.5	43	87	3	162	30	28	16	23	1.96
6383656--6383801	43	3.4	43	80	6	154	32	26	17	23	1.97
6383421--6383862	235	1.9	235	98	0	848	31	26	18	24	1.98
6383702--6383895	101	1.9	101	84	6	259	28	27	17	25	1.98
6383803--6383895	43	2.2	43	80	3	107	25	26	19	27	1.99
6389790--6390370	81	7.2	81	79	5	498	32	19	20	26	1.97
6389811--6390327	243	2.1	242	85	2	696	32	19	21	26	1.97
6392723--6392780	20	2.9	21	84	5	66	34	6	18	39	1.78
6392731--6392781	21	2.5	21	87	6	70	37	5	15	41	1.72
6399860--6400057	99	2.0	99	92	0	333	17	38	12	31	1.87
6403127--6403573	161	2.8	160	90	1	687	29	8	23	39	1.83
6403703--6403802	28	3.4	29	86	4	148	50	1	0	49	1.07
6403717--6403794	13	5.5	15	74	15	69	53	1	0	44	1.08
6404776--6404820	19	2.4	18	82	10	54	42	4	2	51	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6405233--6405258	7	3.7	7	100	0	52	69	0	0	30	0.89
6406913--6407109	59	3.4	58	71	4	180	38	4	28	28	1.77
6407082--6407271	30	6.4	30	84	4	224	34	2	25	37	1.70
6407082--6407271	90	2.1	89	88	4	276	34	2	25	37	1.70
6408352--6408421	7	10.3	7	77	14	67	45	2	1	50	1.25
6408352--6408436	13	6.7	13	72	17	56	44	2	1	51	1.21
6409003--6409061	28	2.1	28	90	0	91	20	15	20	44	1.87
6409100--6409164	17	4.0	17	78	11	73	53	0	4	41	1.21
6409113--6409183	11	6.5	11	72	15	58	56	0	4	39	1.19
6409084--6409181	31	3.3	29	81	6	99	53	0	4	42	1.20
6414519--6414561	21	2.0	21	100	0	86	67	4	9	18	1.36
6425617--6425655	16	2.4	16	82	0	60	28	0	0	71	0.86
6426067--6426136	31	2.3	31	85	9	90	30	12	11	45	1.78
6426527--6426561	18	1.9	18	88	0	52	74	0	11	14	1.08
6428345--6428376	11	2.9	11	95	0	55	40	15	6	37	1.73
6435710--6435774	30	2.1	30	86	13	89	3	56	0	40	1.15
6445141--6445213	25	2.9	25	83	0	92	32	5	17	43	1.72
6445096--6445173	40	2.0	40	86	0	111	29	2	16	51	1.58
6447177--6447223	23	2.1	23	84	4	60	27	2	6	63	1.30
6452842--6452867	2	13.0	2	100	0	52	50	0	0	50	1.00
6455262--6455429	29	5.8	30	82	10	174	32	1	27	38	1.67
6455256--6455429	58	3.0	59	85	5	230	32	1	28	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6456427--6456470	19	2.6	16	80	19	61	47	0	0	52	1.00
6456432--6456470	19	2.1	19	100	0	78	46	0	0	53	1.00
6456506--6456564	21	2.9	21	87	2	84	40	6	5	47	1.52
6457273--6457310	14	2.8	14	84	4	51	23	10	23	42	1.85
6457338--6457420	11	7.4	11	73	8	60	54	4	1	39	1.30
6457315--6457406	28	3.3	27	79	10	82	52	4	1	42	1.28
6457319--6457420	45	2.3	45	84	6	127	54	3	0	40	1.25
6457362--6457420	17	3.5	17	88	2	93	55	1	1	40	1.20
6457345--6457437	34	2.8	32	78	15	100	54	6	2	36	1.38
6458259--6459041	92	8.5	92	93	0	1298	33	18	15	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125