genome.fa.s6.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  97  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29170328--29170433	54	2.0	54	88	0	158	32	18	14	34	1.91
29178068--29178128	30	2.1	29	84	3	77	37	0	6	55	1.26
29179762--29179804	16	2.7	15	82	13	50	53	6	0	39	1.28
29181064--29181434	185	2.0	185	98	0	724	40	21	11	25	1.87
29185270--29185296	2	13.5	2	100	0	54	48	0	0	51	1.00
29187190--29187245	24	2.4	24	85	8	71	25	7	8	58	1.53
29187209--29187255	24	2.0	24	82	0	58	25	8	12	53	1.67
29189187--29189237	24	2.1	24	88	0	75	25	11	5	56	1.57
29189195--29189249	24	2.3	24	83	0	65	29	14	9	47	1.75
29190244--29190285	14	3.1	14	82	3	50	52	7	9	30	1.61
29191182--29191247	30	2.3	30	84	5	82	40	1	3	54	1.25
29191453--29191494	16	2.6	16	84	0	57	38	0	2	59	1.10
29193407--29193467	22	2.8	22	85	7	72	72	3	11	13	1.24
29193433--29193462	15	1.9	16	93	6	53	70	3	13	13	1.30
29194268--29194310	19	2.3	19	84	8	52	58	4	0	37	1.19
29195713--29195768	29	1.9	29	88	0	85	16	7	17	58	1.59
29198382--29198527	71	2.1	71	93	0	247	27	6	23	42	1.79
29199449--29199478	11	2.6	11	94	5	51	30	0	0	70	0.88
29203015--29203051	19	1.9	19	88	0	56	43	2	16	37	1.62
29211907--29211978	35	2.1	34	92	2	117	62	6	11	19	1.50
29211938--29211992	28	2.0	28	85	0	74	58	7	9	25	1.55
29218455--29218539	30	2.9	27	75	19	73	10	15	1	72	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29219701--29219760	25	2.4	25	83	5	68	68	5	8	18	1.34
29221078--29221156	23	3.4	23	75	13	58	62	1	1	35	1.12
29221851--29221878	2	14.0	2	100	0	56	50	0	0	50	1.00
29221942--29221978	18	2.2	16	90	9	56	18	0	8	72	1.08
29234495--29234534	18	2.1	20	90	9	66	22	0	10	67	1.20
29234527--29234587	32	1.9	32	86	0	86	44	13	8	34	1.73
29237263--29237343	29	2.7	30	79	9	85	49	9	4	35	1.58
29237703--29237781	38	2.0	40	85	4	108	46	10	6	36	1.63
29238246--29238312	30	2.2	32	86	7	95	49	0	2	47	1.16
29238246--29238316	31	2.3	30	88	7	99	47	0	2	49	1.16
29239136--29239168	6	5.5	6	100	0	66	33	51	0	15	1.43
29242174--29242200	1	27.0	1	100	0	54	0	0	100	0	0.00
29247359--29247656	40	7.4	40	83	3	348	30	21	33	14	1.92
29247371--29247656	81	3.6	81	85	1	380	30	20	34	14	1.93
29248466--29248515	20	2.5	21	80	9	59	6	26	10	58	1.54
29251599--29251771	42	4.1	43	85	3	226	27	19	25	27	1.98
29255263--29255295	14	2.4	14	100	0	66	30	21	0	48	1.50
29258823--29258905	37	2.2	39	89	6	125	50	1	1	46	1.16
29258857--29258948	26	3.3	26	70	18	69	46	1	1	51	1.15
29261046--29261075	15	1.9	16	93	6	53	26	16	16	40	1.90
29262581--29262620	21	1.9	21	85	10	55	25	0	5	70	1.08
29264325--29264359	13	2.7	13	86	0	52	17	2	0	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29272504--29272547	21	2.1	21	84	12	56	13	11	4	70	1.31
29273006--29273300	150	2.0	150	92	1	493	46	3	14	35	1.62
29278779--29278846	30	2.3	30	85	10	86	25	11	20	42	1.86
29279228--29279284	23	2.4	23	79	2	78	8	28	15	47	1.75
29280951--29280984	2	17.0	2	100	0	68	50	0	0	50	1.00
29287883--29287912	15	2.0	15	93	0	51	70	0	0	30	0.88
29287974--29288027	2	27.0	2	100	0	108	50	0	0	50	1.00
29291390--29291440	24	2.1	24	92	0	84	27	23	21	27	1.99
29292139--29292193	21	2.6	21	82	0	74	30	14	29	25	1.95
29293238--29293306	33	2.1	33	94	0	120	42	2	28	26	1.70
29302553--29302597	20	2.2	20	88	7	65	35	0	8	55	1.31
29305523--29305583	14	4.4	14	72	4	52	52	0	0	47	1.00
29305529--29305589	21	2.9	22	78	7	63	54	0	0	45	1.00
29325271--29325336	27	2.3	27	82	7	69	56	1	1	40	1.18
29325246--29325457	102	2.1	102	84	2	275	45	4	2	47	1.36
29325578--29325611	3	11.3	3	100	0	68	32	0	0	67	0.91
29337708--29337746	18	2.2	18	90	0	60	33	0	0	66	0.92
29339480--29339511	6	5.3	6	96	0	55	37	0	0	62	0.95
29342368--29342604	90	2.6	90	91	0	384	21	27	14	37	1.92
29346742--29346767	3	8.7	3	100	0	52	30	0	0	69	0.89
29347428--29347508	39	2.1	39	86	4	110	11	6	51	30	1.62
29349604--29349642	19	2.0	21	85	10	55	38	0	7	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29349990--29350059	36	1.9	36	91	0	113	40	8	1	50	1.42
29351847--29352012	83	2.0	83	96	0	305	32	10	14	42	1.79
29354585--29354677	41	2.3	41	92	0	150	36	30	6	26	1.82
29354667--29354705	17	2.3	17	90	0	60	46	25	12	15	1.81
29357892--29357940	22	2.5	18	77	22	62	40	4	20	34	1.71
29357900--29357945	22	2.1	22	100	0	92	45	4	17	32	1.68
29358091--29358128	6	6.3	6	93	0	67	50	0	31	18	1.47
29361971--29362022	24	2.2	24	92	0	86	19	34	7	38	1.80
29365529--29365586	18	3.2	18	92	0	98	48	6	5	39	1.52
29372565--29372610	24	2.0	24	86	4	67	45	8	10	34	1.70
29385022--29385049	7	4.0	7	100	0	56	57	0	14	28	1.38
29386115--29386183	29	2.5	28	86	6	95	43	1	1	53	1.18
29391815--29391862	20	2.5	19	76	6	51	56	6	6	31	1.49
29396907--29396933	6	4.5	6	100	0	54	33	33	14	18	1.92
29402365--29402393	13	2.1	14	93	6	51	17	0	0	82	0.66
29406244--29406298	21	2.5	23	79	8	69	32	3	1	61	1.24
29408602--29408632	7	4.4	7	95	0	53	29	0	45	25	1.54
29409197--29409266	29	2.3	29	85	9	88	34	10	14	41	1.79
29409218--29409276	29	2.0	30	90	3	93	28	8	15	47	1.74
29409222--29409285	29	2.2	29	83	8	76	31	10	12	45	1.77
29409423--29409507	29	2.8	31	84	7	104	38	15	10	35	1.82
29417662--29417709	24	1.9	26	84	16	66	45	0	22	31	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29417791--29417894	22	4.6	22	82	8	120	10	21	25	43	1.84
29417785--29417894	44	2.4	45	85	10	143	10	22	23	42	1.85
29417827--29417944	25	4.8	24	86	9	134	11	27	20	39	1.88
29425553--29425866	155	2.0	155	98	0	601	42	17	16	22	1.89
29430682--29430727	14	3.1	15	78	15	51	69	2	2	26	1.11
29433510--29433556	10	5.1	9	79	10	51	40	2	4	53	1.32
29435964--29436014	18	2.8	18	80	11	59	49	19	17	13	1.80
29437107--29437139	17	1.9	17	88	11	50	33	0	18	48	1.48
29437370--29437444	22	3.4	22	73	0	78	18	29	12	40	1.87
29437363--29437463	44	2.3	44	79	6	114	19	26	10	42	1.84
29438823--29438872	21	2.4	21	93	0	82	26	14	24	36	1.93
29439634--29439680	21	2.2	21	77	7	51	46	2	6	44	1.40
29440116--29440164	24	2.0	26	84	15	68	48	2	4	44	1.33
29443132--29443171	15	2.7	15	92	0	62	10	30	0	60	1.30
29443174--29443406	113	2.0	115	92	4	391	30	19	9	41	1.82
29446526--29446573	14	3.6	14	71	28	50	52	0	2	45	1.12
29447970--29448015	12	3.8	13	83	13	62	0	26	43	30	1.55
29448023--29448146	18	7.2	17	78	10	130	0	33	13	52	1.41
29448023--29448153	33	3.9	34	83	5	142	0	32	15	51	1.43
29448021--29448170	51	3.0	49	86	10	184	0	32	14	52	1.42
29448026--29448166	18	8.3	18	73	13	93	0	32	14	53	1.41
29451718--29451759	3	14.0	3	100	0	84	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29452206--29452233	2	14.0	2	100	0	56	50	0	0	50	1.00
29453408--29453467	22	2.8	22	82	7	70	60	3	0	36	1.14
29460499--29460527	1	29.0	1	100	0	58	0	100	0	0	0.00
29477485--29477532	20	2.3	20	82	3	51	56	12	4	27	1.54
29481378--29481406	12	2.4	12	100	0	58	24	0	10	65	1.23
29490769--29490816	23	2.0	23	84	12	60	39	2	4	54	1.32
29491369--29491403	17	2.1	17	88	0	52	51	0	0	48	1.00
29493944--29494023	31	2.6	31	81	0	97	47	8	12	31	1.72
29496167--29496235	9	7.2	9	78	18	61	52	0	1	46	1.09
29496166--29496242	9	7.8	10	76	22	58	51	0	1	46	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125