genome.fa.s6.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  8  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2623634--2623704	31	2.3	31	83	11	94	45	19	12	22	1.84
2623821--2623893	31	2.4	31	84	11	89	21	12	20	45	1.84
2627613--2627658	24	1.9	24	86	0	65	54	0	4	41	1.20
2629095--2629144	24	2.1	24	100	0	100	30	12	34	24	1.91
2641896--2641960	12	5.3	12	73	10	60	61	1	0	36	1.05
2641896--2641959	24	2.6	26	78	9	71	62	1	0	35	1.05
2646557--2646630	29	2.6	29	77	12	73	32	2	27	37	1.71
2646616--2646732	29	4.1	31	76	13	85	30	3	28	37	1.74
2646630--2646732	29	3.6	28	82	8	111	33	3	27	35	1.75
2648049--2648080	15	2.1	15	94	0	55	9	6	15	68	1.36
2648448--2648507	10	6.0	10	75	21	63	55	6	0	38	1.27
2649769--2649859	8	11.0	8	71	16	53	67	1	1	30	1.05
2655500--2655536	16	2.3	16	100	0	74	21	21	35	21	1.96
2656122--2656163	21	2.1	19	83	16	50	30	0	4	64	1.14
2659569--2659602	3	11.3	3	100	0	68	32	0	32	35	1.58
2660441--2660484	21	2.1	21	83	8	54	36	20	4	38	1.73
2660492--2660534	19	2.2	20	87	4	61	55	18	4	20	1.60
2661659--2661752	47	2.0	47	100	0	188	53	12	12	21	1.72
2663045--2663094	7	7.1	7	100	0	100	28	14	44	14	1.83
2666126--2666176	24	2.2	23	82	10	59	60	0	1	37	1.08
2672401--2672462	29	2.1	31	87	6	92	37	0	6	56	1.25
2672733--2672757	13	1.9	13	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2675478--2675502	5	5.0	5	100	0	50	0	20	0	80	0.72
2678036--2678175	58	2.4	58	79	1	145	25	15	10	48	1.77
2681352--2681408	30	1.9	30	85	7	80	64	14	1	19	1.36
2688325--2688351	4	6.8	4	100	0	54	25	0	74	0	0.83
2691663--2691726	22	2.9	22	83	4	76	9	12	10	67	1.43
2705039--2705296	72	3.5	73	76	3	268	26	25	11	36	1.90
2709195--2709289	28	3.4	26	77	12	82	28	12	9	49	1.72
2710700--2710863	63	2.7	61	81	12	192	53	2	0	43	1.18
2710697--2710860	59	2.7	61	81	14	191	52	2	0	44	1.18
2710840--2710883	22	2.0	22	82	8	54	75	0	2	22	0.92
2722360--2722410	26	2.1	24	86	13	70	29	21	7	41	1.81
2724275--2724321	23	2.0	25	83	8	62	53	0	2	44	1.12
2724656--2724685	9	3.3	9	100	0	60	40	0	0	60	0.97
2725332--2725414	2	41.5	2	100	0	166	50	0	0	49	1.00
2733790--2733902	59	1.9	60	85	5	158	41	12	13	32	1.81
2734690--2734725	16	2.2	16	90	0	54	50	0	13	36	1.43
2734896--2735030	61	2.2	61	88	5	193	51	2	2	44	1.26
2735653--2735692	18	2.2	19	90	4	64	37	0	0	62	0.95
2738119--2738175	26	2.2	26	81	6	62	59	1	0	38	1.08
2745456--2745493	20	1.9	19	89	5	58	18	13	2	65	1.37
2745591--2745632	17	2.5	17	84	0	57	57	0	0	42	0.99
2748316--2748376	31	2.0	31	86	0	86	29	4	19	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2749924--2749987	29	2.2	29	97	2	121	51	12	15	20	1.75
2753290--2753339	20	2.5	20	80	0	55	38	8	4	50	1.51
2754791--2754843	22	2.5	21	79	11	63	35	0	0	64	0.94
2754806--2754889	28	3.0	27	76	15	80	36	2	1	59	1.18
2765486--2765510	13	1.9	13	100	0	50	52	0	0	48	1.00
2777548--2777583	4	9.0	4	87	0	54	50	5	19	25	1.69
2777548--2777583	12	3.0	12	95	0	63	50	5	19	25	1.69
2780261--2780294	7	4.9	7	85	0	50	44	11	29	14	1.81
2780261--2780300	14	2.9	14	88	3	55	45	10	30	15	1.78
2781169--2781211	18	2.5	17	81	7	50	72	2	4	20	1.14
2785873--2785941	29	2.4	29	80	9	88	31	1	4	62	1.24
2785939--2785995	19	3.1	18	82	7	62	36	0	10	52	1.36
2786793--2786834	20	2.2	20	87	8	61	2	19	2	76	1.01
2789156--2789197	2	21.0	2	85	0	57	45	2	4	47	1.36
2789557--2789592	2	18.0	2	100	0	72	50	0	0	50	1.00
2789761--2789785	12	2.1	12	100	0	50	52	8	8	32	1.60
2789364--2790114	393	1.9	385	93	2	1277	43	13	16	27	1.84
2789380--2790085	203	3.5	201	83	10	957	44	12	15	27	1.83
2791182--2791239	29	2.0	29	89	0	89	41	13	3	41	1.62
2792500--2792543	23	1.9	23	86	9	63	43	4	18	34	1.70
2793176--2793212	18	2.0	18	89	5	56	35	5	0	59	1.20
2795249--2795287	20	2.0	20	85	10	53	46	12	0	41	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2801598--2801659	31	1.9	34	81	15	78	45	1	8	45	1.42
2802193--2802230	11	3.5	11	85	7	60	52	0	0	47	1.00
2802177--2802302	20	6.7	18	69	23	64	50	5	1	42	1.35
2802185--2802317	45	2.9	46	70	15	123	51	4	1	42	1.31
2806588--2806646	29	2.0	30	93	3	102	49	15	6	28	1.70
2811168--2811202	2	17.5	2	100	0	70	51	0	0	48	1.00
2811485--2811512	4	7.0	4	100	0	56	0	75	0	25	0.81
2812236--2812290	25	2.2	25	96	0	101	56	5	7	30	1.49
2822228--2822265	19	2.1	19	95	5	69	73	0	0	26	0.83
2822887--2822926	10	3.9	10	83	6	53	7	2	22	67	1.28
2823467--2823492	2	13.0	2	100	0	52	50	0	0	50	1.00
2824269--2824339	3	23.7	3	100	0	142	67	0	0	32	0.91
2827197--2827239	21	2.0	21	90	4	68	13	6	4	74	1.19
2829636--2829756	23	5.2	23	82	11	156	11	25	23	39	1.88
2829636--2829756	48	2.6	46	87	7	172	11	25	23	39	1.88
2829721--2829795	39	1.9	39	91	0	123	12	22	21	44	1.85
2829755--2829848	23	4.0	23	76	16	95	11	24	19	44	1.84
2836090--2836210	23	5.2	23	82	11	156	11	25	23	39	1.88
2836090--2836210	48	2.6	46	87	7	172	11	25	23	39	1.88
2836175--2836249	39	1.9	39	91	0	123	12	22	21	44	1.85
2836209--2836302	23	4.0	23	76	16	95	11	24	19	44	1.84
2852138--2852322	95	1.9	95	83	6	241	45	16	9	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2853172--2853231	19	3.0	19	81	13	59	25	3	5	66	1.27
2853191--2853231	21	2.0	21	90	9	66	26	2	4	65	1.25
2853167--2853226	10	6.1	10	72	16	54	28	1	3	66	1.17
2856022--2856063	18	2.3	18	84	8	50	54	4	0	40	1.21
2859757--2860165	203	2.0	203	99	0	809	35	14	22	27	1.93
2861905--2861958	20	2.6	19	76	23	56	59	7	11	22	1.56
2862043--2862411	57	6.4	57	77	12	337	36	3	28	31	1.73
2862204--2862411	29	7.2	28	69	21	126	35	1	28	33	1.69
2862046--2862411	58	6.3	58	78	11	362	36	3	28	31	1.73
2862335--2862415	30	2.8	28	73	19	76	35	0	29	34	1.58
2863074--2863103	11	2.7	11	94	0	51	23	53	13	10	1.69
2864248--2864291	17	2.7	15	80	19	52	50	2	4	43	1.35
2875075--2875108	17	2.0	17	88	11	52	58	5	0	35	1.22
2877799--2877924	60	2.1	60	90	0	198	38	15	8	37	1.79
2877987--2878044	29	2.0	29	89	0	89	43	8	13	34	1.75
2882227--2882255	14	2.0	15	93	6	51	17	0	0	82	0.66
2884370--2884408	19	2.1	19	95	0	69	12	0	20	66	1.24
2884496--2884562	4	17.0	4	79	11	59	70	0	29	0	0.88
2884497--2884524	13	2.2	13	100	0	56	78	0	21	0	0.75
2884496--2884562	17	3.9	17	77	12	75	70	0	29	0	0.88
2886553--2886612	18	3.3	18	75	15	70	65	1	1	31	1.13
2887819--2887858	20	2.0	21	85	5	55	27	2	0	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2890729--2890766	20	1.9	20	84	10	51	57	0	2	39	1.12
2905767--2905952	56	3.4	56	81	5	218	26	16	12	43	1.84
2909706--2909734	14	2.1	14	100	0	58	58	13	6	20	1.58
2914263--2914323	31	2.0	31	83	0	77	50	6	6	36	1.54
2928574--2928605	7	4.6	7	96	0	55	31	9	0	59	1.29
2942592--2942739	76	1.9	76	100	0	296	36	26	12	25	1.91
2944240--2944296	21	2.4	23	83	16	73	54	7	8	29	1.58
2950759--2950888	30	4.0	32	85	8	165	50	11	5	32	1.61
2952864--2952905	21	2.0	20	90	4	66	50	0	2	47	1.14
2955356--2955397	14	2.7	16	85	10	52	40	2	2	54	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125