genome.fa.s6.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  112  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34462501--34462575	30	2.5	30	84	4	89	42	2	6	48	1.43
34464213--34464731	192	2.7	192	78	6	507	28	15	17	38	1.90
34477863--34477997	31	4.5	31	70	14	111	40	12	17	28	1.86
34477855--34477966	59	1.9	59	83	3	145	45	12	15	26	1.81
34477863--34478055	90	2.1	90	86	3	264	44	11	16	28	1.82
34487256--34487280	2	12.5	2	100	0	50	52	0	0	48	1.00
34497383--34497834	236	1.9	235	88	4	687	34	12	22	29	1.91
34504525--34504554	2	15.0	2	92	0	51	46	0	3	50	1.18
34513686--34513739	22	2.5	22	87	3	74	62	9	5	22	1.45
34518920--34518947	8	3.5	8	100	0	56	89	10	0	0	0.49
34528240--34528296	4	14.2	4	78	7	53	66	3	29	0	1.08
34530657--34530702	21	2.2	21	92	0	74	34	17	26	21	1.95
34530697--34530830	45	3.0	45	85	2	171	20	20	26	33	1.97
34532774--34532822	16	3.2	16	73	26	61	32	0	8	59	1.27
34533580--34533614	18	1.9	18	94	0	61	60	8	0	31	1.27
34533793--34533832	4	10.5	4	84	10	57	0	22	0	77	0.77
34533798--34533839	22	2.0	20	86	9	57	0	21	0	78	0.75
34534468--34534811	169	2.0	169	85	0	472	25	13	23	36	1.92
34542044--34542104	30	2.0	30	100	0	122	29	9	9	50	1.67
34543246--34543309	31	2.1	30	82	5	76	57	4	1	35	1.29
34551818--34551857	19	2.0	20	85	4	55	45	15	2	37	1.59
34554376--34554401	3	8.7	3	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34556250--34556282	5	6.8	5	96	3	59	0	15	0	84	0.61
34560287--34560329	17	2.5	18	81	11	54	65	2	4	27	1.25
34561598--34561638	22	2.0	20	85	9	55	41	14	2	41	1.59
34569368--34569396	14	2.0	15	93	6	51	41	13	10	34	1.79
34569522--34569560	2	19.5	2	100	0	78	51	0	0	48	1.00
34574878--34580357	913	6.0	913	99	0	10933	38	11	19	31	1.87
34581145--34581200	26	2.3	23	85	14	78	7	26	23	42	1.79
34581153--34581207	26	2.1	26	100	0	110	9	30	23	36	1.86
34584583--34584665	42	2.0	42	100	0	166	22	31	12	33	1.91
34586129--34586162	18	1.9	18	88	5	52	29	0	5	64	1.17
34588201--34588252	27	2.0	26	88	3	77	25	1	7	65	1.30
34591766--34591833	31	2.2	31	91	0	109	29	11	10	48	1.73
34592016--34592088	29	2.5	30	93	2	121	58	2	8	30	1.41
34595550--34595639	28	3.1	29	77	9	85	54	6	10	28	1.59
34596512--34596536	12	2.1	12	100	0	50	16	0	8	76	1.02
34603580--34603761	93	2.0	93	81	4	215	21	30	21	25	1.98
34603784--34603823	6	6.7	6	100	0	80	15	50	0	35	1.44
34615870--34615915	15	3.1	15	93	0	83	41	10	32	15	1.82
34615915--34616046	21	6.3	21	93	0	210	57	3	32	6	1.41
34621332--34621381	22	2.2	23	82	10	59	26	14	8	52	1.68
34629917--34629959	18	2.4	18	88	7	61	46	2	0	51	1.13
34634368--34634426	29	2.0	30	90	3	93	54	13	3	28	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34635912--34635958	19	2.5	19	75	6	51	19	10	10	59	1.59
34667909--34667941	4	8.2	4	93	0	57	24	3	27	45	1.68
34672156--34672199	19	2.5	17	82	17	54	45	2	0	52	1.13
34672453--34672477	3	8.3	3	100	0	50	68	0	0	32	0.90
34674276--34674326	26	2.0	26	84	7	68	56	9	7	25	1.58
34674588--34674621	15	2.4	14	90	5	50	32	0	0	67	0.91
34692353--34692424	30	2.5	28	80	14	83	22	2	4	70	1.17
34700154--34700202	3	16.3	3	100	0	98	32	0	0	67	0.91
34703865--34703912	24	2.1	22	84	7	60	37	2	0	60	1.09
34703872--34703911	15	2.5	16	84	8	55	35	2	0	62	1.09
34705466--34705500	13	2.7	13	90	0	52	65	5	5	22	1.36
34706768--34706852	33	2.6	33	78	15	95	27	14	8	50	1.70
34707501--34707549	22	2.3	22	79	10	57	26	6	8	59	1.50
34707508--34707552	22	2.0	22	84	16	58	31	4	6	57	1.44
34707718--34707774	28	2.0	28	83	12	73	64	3	5	26	1.30
34708043--34708122	31	2.6	31	82	6	99	33	15	10	41	1.80
34710947--34710985	6	6.7	6	85	5	53	41	0	0	58	0.98
34710936--34710981	23	2.0	23	82	0	56	43	4	0	52	1.21
34713642--34713695	26	2.1	26	92	0	90	22	7	12	57	1.60
34716385--34716412	3	9.3	3	100	0	56	67	32	0	0	0.91
34717321--34717458	59	2.3	61	83	3	181	27	10	10	50	1.71
34717653--34717791	31	4.5	31	77	13	135	48	10	14	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34717599--34717791	91	2.1	90	86	3	264	47	12	13	25	1.79
34722391--34722610	109	2.0	108	86	4	309	36	16	29	17	1.92
34731496--34731521	13	2.0	13	100	0	52	61	0	0	38	0.96
34742669--34742771	22	4.8	21	81	8	109	7	7	20	64	1.45
34742708--34742814	57	1.9	54	81	9	126	10	6	18	64	1.46
34742804--34742866	12	5.3	12	78	3	56	12	4	11	71	1.29
34742805--34742866	23	2.7	23	82	2	70	12	4	11	70	1.30
34742849--34742873	12	2.1	12	100	0	50	8	0	24	68	1.16
34746020--34746073	28	2.0	27	92	3	90	18	5	12	62	1.48
34748865--34748916	21	2.5	21	73	14	54	11	25	0	63	1.28
34756954--34757076	4	30.8	4	98	0	237	25	0	24	49	1.56
34760147--34760209	23	2.5	26	80	14	71	36	3	4	55	1.37
34766908--34767022	19	5.9	19	69	14	67	63	2	3	30	1.24
34766905--34766997	29	3.2	28	76	8	73	63	3	4	29	1.29
34766905--34767161	10	26.8	9	67	20	73	61	4	3	31	1.31
34769798--34769840	8	5.1	8	78	10	50	69	2	13	13	1.28
34769801--34769868	25	2.7	26	77	9	68	75	2	8	13	1.16
34770746--34770794	24	2.1	23	84	3	62	44	0	4	51	1.20
34771915--34771978	23	2.7	23	79	11	69	65	0	3	31	1.08
34771915--34771970	23	2.4	24	82	8	71	66	0	1	32	1.03
34771933--34771999	31	2.2	31	81	10	75	67	4	1	26	1.19
34778449--34778530	32	2.6	32	86	5	105	43	10	19	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34785664--34785716	26	2.0	26	85	0	70	33	11	5	49	1.62
34786622--34786769	80	1.9	76	83	10	192	24	21	10	43	1.84
34787517--34787545	13	2.1	14	93	6	51	10	13	6	68	1.37
34809071--34809114	6	7.3	6	100	0	88	18	50	0	31	1.47
34820141--34820174	18	1.9	17	88	5	50	35	0	0	64	0.94
34820724--34820757	18	1.9	18	88	5	52	47	8	0	44	1.34
34820870--34820916	20	2.3	20	78	10	51	31	4	0	63	1.13
34824262--34824296	13	2.7	13	95	0	61	5	8	8	77	1.13
34827577--34827611	17	2.1	17	100	0	70	20	5	11	62	1.48
34835842--34836032	92	2.1	92	95	0	346	37	10	1	50	1.46
34852944--34852971	2	14.0	2	100	0	56	0	50	0	50	1.00
34855552--34855577	13	2.0	13	100	0	52	23	7	7	61	1.49
34855821--34855865	18	2.4	18	88	3	63	57	2	0	40	1.11
34856578--34856616	11	3.7	10	86	10	51	64	0	2	33	1.08
34858690--34858762	30	2.4	29	82	14	103	28	1	24	45	1.62
34859365--34859429	27	2.4	28	77	17	73	6	18	3	72	1.19
34860408--34860453	11	4.0	12	77	8	51	43	0	0	56	0.99
34860427--34860530	6	18.0	6	71	18	78	54	1	1	41	1.22
34860427--34860529	11	9.0	11	73	11	64	54	1	1	41	1.22
34860427--34860530	17	6.4	17	80	9	101	54	1	1	41	1.22
34860429--34860506	37	2.1	36	83	9	95	56	1	2	39	1.21
34860446--34860524	28	2.7	28	82	5	86	58	1	2	37	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34860822--34860848	12	2.2	12	100	0	54	70	0	0	29	0.88
34861849--34861882	8	4.5	8	92	7	54	0	8	0	91	0.43
34861849--34861889	15	2.8	14	92	7	64	2	9	0	87	0.62
34861849--34861889	7	5.7	7	85	5	55	2	9	0	87	0.62
34862484--34862513	9	3.2	9	95	4	51	56	0	0	43	0.99
34862489--34862534	21	2.2	21	88	7	67	54	0	2	43	1.12
34867392--34867424	16	2.1	16	94	0	57	27	3	24	45	1.68
34868179--34868205	10	2.7	10	100	0	54	25	0	0	74	0.83
34870370--34870651	59	4.6	61	76	12	215	39	15	18	25	1.91
34870375--34870647	119	2.3	122	82	8	319	39	16	18	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125