genome.fa.s6.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  52  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16043152--16043497	162	2.1	162	90	1	532	26	17	11	44	1.83
16043571--16043790	29	7.5	28	67	16	97	32	30	3	33	1.75
16043568--16043882	59	5.4	58	85	3	375	31	29	5	33	1.79
16043713--16043877	30	5.7	27	68	16	80	30	25	6	38	1.80
16043864--16043922	28	2.1	28	87	9	86	32	30	11	25	1.92
16046635--16047076	219	2.0	219	100	0	884	32	11	17	38	1.86
16048268--16048366	6	16.0	6	75	14	76	50	1	2	46	1.19
16048262--16048326	17	4.1	15	79	15	69	41	0	4	53	1.21
16048268--16048329	31	2.0	31	90	6	99	43	0	3	53	1.17
16048273--16048322	25	2.0	25	88	0	73	42	0	4	54	1.19
16048248--16048328	11	7.5	11	71	19	55	40	0	4	54	1.22
16048258--16048351	42	2.3	41	81	5	100	46	0	3	50	1.17
16048314--16048366	20	2.8	18	80	11	52	60	1	0	37	1.08
16048441--16048477	13	2.7	15	80	20	53	37	27	16	18	1.92
16048535--16048565	15	2.1	15	93	0	53	19	51	12	16	1.76
16048995--16049029	16	2.2	16	90	5	54	45	2	0	51	1.16
16049878--16050173	160	1.8	162	89	2	472	24	15	12	46	1.81
16050278--16050511	30	7.7	30	88	1	333	37	24	2	35	1.70
16050283--16050511	60	3.8	60	89	1	368	37	24	2	35	1.68
16050283--16050505	121	1.8	121	95	0	401	38	23	2	36	1.67
16050283--16050598	60	5.3	59	81	9	317	36	25	3	34	1.72
16050491--16050592	29	3.6	29	72	16	104	34	27	3	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16062718--16063115	68	5.8	68	97	0	724	34	18	20	27	1.95
16063063--16063295	38	6.4	38	71	14	186	33	18	19	28	1.95
16062924--16063295	174	2.1	177	88	5	554	33	18	19	28	1.96
16063104--16063336	68	3.3	68	80	8	295	35	16	19	28	1.94
16062788--16063258	106	4.5	105	73	13	319	33	18	19	28	1.96
16063650--16063748	6	16.0	6	75	14	76	49	1	3	46	1.24
16063644--16063708	17	4.1	15	79	15	69	41	0	4	53	1.21
16063650--16063710	31	2.0	31	90	6	97	42	0	3	54	1.17
16063655--16063704	25	2.0	25	88	0	73	42	0	4	54	1.19
16063630--16063710	11	7.5	11	71	19	55	40	0	4	54	1.22
16063640--16063733	42	2.3	41	81	5	100	45	0	4	50	1.21
16063696--16063748	20	2.8	18	80	11	52	58	1	1	37	1.20
16063823--16063859	13	2.7	15	80	20	53	37	27	16	18	1.92
16063917--16063947	15	2.1	15	100	0	62	19	54	12	12	1.70
16064377--16064411	16	2.2	16	90	5	54	45	2	0	51	1.16
16065255--16065623	161	2.3	160	83	6	408	23	17	14	44	1.85
16065660--16065892	30	7.7	30	84	2	297	37	23	3	35	1.72
16065665--16065886	121	1.8	120	91	2	365	38	21	3	36	1.70
16065660--16065922	90	2.9	89	79	8	291	36	23	3	35	1.73
16065665--16065979	60	5.3	59	79	10	254	36	24	3	35	1.74
16065871--16065973	29	3.6	30	74	12	108	33	27	3	34	1.75
16070931--16070993	31	2.0	31	96	0	117	42	12	14	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16072139--16072180	21	2.0	21	90	0	66	38	19	7	35	1.79
16078646--16078671	2	13.0	2	100	0	52	50	0	0	50	1.00
16086059--16086144	42	2.0	42	97	0	163	48	5	6	38	1.54
16100074--16100116	17	2.5	17	80	0	50	60	11	11	16	1.59
16105348--16105391	17	2.6	17	85	0	61	15	9	11	63	1.51
16110049--16110074	2	13.0	2	100	0	52	50	0	0	50	1.00
16112277--16112357	24	3.3	25	84	1	76	48	1	32	18	1.56
16112288--16112356	24	2.8	24	86	2	84	47	1	34	15	1.55
16114326--16114404	25	3.2	25	66	16	74	35	3	13	46	1.62
16114320--16114439	49	2.4	49	97	0	222	35	4	13	46	1.62
16122425--16123022	298	2.0	299	92	0	1002	27	15	26	30	1.96
16127759--16127863	3	35.0	3	98	0	174	33	3	0	62	1.13
16130480--16130514	11	3.1	11	88	8	52	22	8	14	54	1.67
16130464--16130513	12	4.2	12	79	5	57	22	10	16	52	1.73
16130446--16130583	24	6.0	24	72	6	88	22	17	18	42	1.89
16133758--16133830	20	3.5	20	71	12	58	17	1	27	53	1.52
16133758--16133831	21	3.6	21	78	7	71	17	1	27	54	1.51
16134520--16134578	30	2.0	30	86	0	82	16	33	27	22	1.95
16135417--16135587	41	4.2	41	80	5	177	34	26	21	18	1.96
16135402--16135589	82	2.3	82	83	3	236	34	26	21	17	1.96
16138602--16138742	41	3.4	41	82	3	142	32	29	19	17	1.95
16141621--16141680	20	3.2	19	86	6	86	38	0	3	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16142351--16142434	2	41.5	2	97	2	159	50	1	0	48	1.08
16147558--16147603	22	2.0	23	87	4	67	52	2	0	45	1.13
16148220--16148274	29	2.0	29	86	13	80	10	20	1	67	1.30
16148926--16148964	11	3.5	11	92	3	60	46	5	0	48	1.24
16149171--16149217	15	3.1	15	77	22	62	42	6	4	46	1.48
16149932--16149977	25	1.9	25	86	8	69	32	4	6	56	1.45
16153942--16154029	9	9.7	9	78	7	52	35	7	1	55	1.36
16155075--16155203	44	2.9	44	96	0	231	48	6	10	33	1.65
16158026--16158054	3	9.7	3	100	0	58	68	31	0	0	0.89
16160185--16160264	38	2.1	38	81	6	92	58	1	0	40	1.06
16160189--16160346	28	5.7	27	70	13	99	60	1	1	35	1.18
16160206--16160295	9	9.7	9	71	14	67	61	1	0	37	1.04
16160251--16160334	19	4.4	18	75	11	87	61	2	1	34	1.16
16160242--16160336	10	10.3	9	71	15	52	61	2	1	35	1.15
16160327--16160391	19	3.4	18	76	16	69	56	4	9	29	1.50
16160576--16160658	30	2.8	29	82	12	96	33	1	1	63	1.10
16160594--16160657	29	2.2	29	86	5	85	37	0	1	60	1.06
16161883--16161922	19	2.1	19	95	0	71	32	22	22	22	1.98
16163473--16163502	15	2.0	15	93	0	51	6	36	0	56	1.26
16163731--16163770	11	3.2	13	77	22	50	60	0	0	40	0.97
16164506--16164557	21	2.5	21	81	6	61	36	25	11	26	1.90
16169584--16169624	3	13.7	3	100	0	82	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16171704--16171792	43	2.1	43	91	4	146	41	4	28	25	1.75
16174695--16174723	14	2.1	14	93	6	51	41	0	0	58	0.98
16174690--16174728	19	2.0	20	85	14	55	41	0	0	58	0.98
16176013--16176087	23	3.2	22	74	7	60	42	20	22	14	1.88
16178103--16178156	24	2.2	25	78	15	60	16	51	3	27	1.61
16182964--16183002	10	3.9	10	82	0	51	66	2	0	30	1.05
16183137--16183381	92	2.7	89	88	4	339	35	10	18	35	1.85
16183816--16183841	11	2.4	11	100	0	52	69	0	0	30	0.89
16185468--16185507	21	2.0	20	85	5	53	65	2	15	17	1.39
16186108--16186323	50	4.4	50	70	17	162	44	8	3	43	1.52
16186092--16186889	148	5.4	147	87	6	1129	44	10	3	42	1.54
16187156--16187196	20	2.0	22	85	9	59	29	9	2	58	1.43
16197823--16197905	30	2.7	30	85	7	105	46	4	0	48	1.23
16202816--16202904	25	3.6	25	82	0	115	26	24	20	28	1.99
16208687--16208818	25	5.3	25	79	2	131	29	23	20	26	1.99
16208692--16208820	49	2.6	50	80	1	134	31	22	19	27	1.98
16209043--16209087	22	2.0	22	82	0	54	35	13	4	46	1.63
16215082--16215250	68	2.5	69	86	5	229	35	17	4	42	1.69
16215233--16215274	22	2.0	22	90	4	68	42	16	2	38	1.61
16215253--16215494	94	2.6	94	77	7	247	37	17	8	36	1.80
16215624--16215652	2	14.5	2	100	0	58	48	0	0	51	1.00
16215820--16215864	21	2.1	21	84	8	56	37	11	11	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16217717--16217756	21	1.9	21	89	0	62	35	0	0	65	0.93
16219638--16219693	26	2.2	26	86	0	76	23	10	8	57	1.61
16222749--16222804	25	2.2	25	87	9	78	51	0	0	48	1.00
16224049--16224095	16	2.9	17	84	6	53	44	0	0	55	0.99
16231716--16231923	79	2.6	79	87	0	290	22	18	27	31	1.97
16237502--16237564	24	2.6	24	82	0	81	49	9	14	26	1.74
16239490--16239546	24	2.4	24	87	0	78	52	8	12	26	1.67
16239502--16239548	24	2.0	24	95	0	85	57	6	8	27	1.53
16242784--16243114	118	2.8	118	88	2	473	23	25	17	34	1.96
16243019--16243128	47	2.3	48	79	4	116	22	27	16	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125