genome.fa.s6.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  9  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2959126--2959412	144	2.0	144	99	0	565	28	16	18	36	1.93
2963014--2963079	6	11.2	6	72	15	57	40	4	0	54	1.21
2963014--2963123	17	6.6	17	70	13	59	46	6	0	46	1.34
2963014--2963045	11	2.9	11	95	0	55	40	0	0	59	0.97
2963070--2963099	16	1.9	15	93	6	51	53	10	0	36	1.35
2963932--2963976	18	2.5	18	82	7	56	48	4	8	37	1.55
2963986--2964028	15	2.6	18	89	10	65	58	0	2	39	1.11
2965154--2965514	58	6.2	59	88	1	514	33	32	2	32	1.70
2965154--2965517	117	3.1	118	90	2	547	33	32	2	31	1.71
2979402--2979482	30	2.7	29	74	12	83	37	7	17	38	1.78
2979915--2979974	17	3.5	17	81	2	66	43	3	3	50	1.35
2981952--2982292	29	11.8	29	72	11	200	37	25	2	34	1.70
2981952--2982295	59	5.9	58	75	7	236	37	25	2	34	1.71
2982251--2982387	58	2.3	59	80	5	152	32	21	4	40	1.73
2982129--2982387	59	4.4	59	77	7	176	33	23	3	38	1.73
2984181--2984901	90	8.2	88	72	10	451	28	11	13	46	1.78
2985296--2985358	27	2.3	27	94	0	108	15	31	33	19	1.93
2985297--2985373	27	2.9	27	84	3	93	16	29	31	22	1.96
2985530--2985660	57	2.4	55	78	10	142	56	5	2	35	1.35
2985725--2985785	27	2.3	27	94	0	104	14	24	39	21	1.91
2985820--2985869	25	2.0	25	96	0	91	48	6	20	26	1.72
2985860--2985917	26	2.2	26	84	0	71	55	5	29	10	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2988664--2988721	28	2.1	28	83	6	73	36	1	12	50	1.50
2988713--2988762	26	1.9	26	83	0	64	32	0	10	58	1.31
2988828--2988880	6	8.8	6	87	8	72	66	13	1	18	1.34
2989313--2989349	6	6.2	6	100	0	74	16	32	35	16	1.91
2991210--2991254	16	3.1	15	84	12	58	60	0	0	40	0.97
2992220--2992272	27	2.0	27	96	0	97	22	39	26	11	1.88
2992584--2992812	93	2.5	93	78	8	231	29	6	9	54	1.58
2992582--2993755	90	13.1	89	73	9	633	27	8	13	50	1.70
2992853--2993354	178	2.8	180	78	8	464	28	9	12	50	1.70
2997552--2997597	22	2.1	21	88	4	65	76	0	13	10	1.03
3015079--3015114	3	11.7	3	94	5	63	66	0	0	33	0.92
3015221--3015269	26	1.9	25	84	12	64	53	2	4	40	1.32
3021122--3021164	15	2.8	16	78	3	52	37	4	0	58	1.19
3029725--3029754	7	4.1	7	95	4	51	56	3	0	40	1.16
3043328--3043361	16	2.1	16	88	0	50	70	0	5	23	1.09
3046177--3046211	3	11.7	3	93	0	61	31	31	0	37	1.58
3056284--3056313	8	3.8	8	90	0	51	83	0	0	16	0.65
3056277--3056313	16	2.2	17	95	4	67	78	2	0	18	0.87
3056499--3056556	29	2.0	29	83	6	73	48	0	1	50	1.11
3065703--3065739	18	2.1	18	100	0	74	37	27	0	35	1.57
3074549--3074591	18	2.4	18	80	7	52	51	0	2	46	1.13
3077358--3077413	20	2.7	20	80	5	58	33	0	3	62	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3078976--3079051	31	2.5	30	78	4	82	32	2	10	53	1.49
3079189--3079248	29	2.1	28	81	9	75	53	13	5	28	1.60
3079688--3079722	2	18.0	2	94	5	63	51	0	0	48	1.00
3083119--3083161	13	3.2	13	80	3	50	30	0	0	69	0.88
3085412--3085453	17	2.5	17	96	0	75	54	7	30	7	1.54
3088608--3088690	8	10.0	8	75	14	71	78	0	21	0	0.75
3088594--3088687	11	7.9	11	71	18	55	79	2	18	0	0.82
3088606--3088689	17	4.3	19	73	22	59	79	0	20	0	0.73
3088618--3088691	29	2.5	31	78	14	93	75	0	24	0	0.80
3088867--3089410	80	6.8	80	86	2	627	34	23	16	25	1.95
3089398--3089535	50	2.8	50	90	0	213	42	13	16	26	1.86
3106251--3106296	6	7.7	6	100	0	92	0	47	17	34	1.48
3107348--3107402	18	3.2	17	75	10	51	30	0	5	63	1.17
3120260--3120313	29	1.9	27	85	7	72	59	1	7	31	1.36
3121618--3121678	28	2.2	29	80	14	74	45	6	9	37	1.63
3137363--3137408	23	2.0	23	83	8	58	41	10	15	32	1.82
3137404--3137465	28	2.2	28	85	0	79	58	11	6	24	1.56
3142612--3142653	21	1.9	23	90	9	70	35	9	0	54	1.33
3156184--3156232	15	3.3	15	85	0	71	26	22	12	38	1.89
3158319--3158747	214	2.0	214	99	0	849	44	9	19	26	1.81
3172046--3172086	22	1.9	21	85	14	57	31	2	4	60	1.30
3172434--3172581	9	15.9	9	69	18	81	31	2	2	64	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3172434--3172556	20	6.7	18	71	19	71	30	2	2	64	1.20
3172434--3172554	45	2.6	45	73	18	106	31	2	2	63	1.20
3185286--3185321	11	3.4	11	88	7	56	38	0	0	61	0.96
3187076--3187145	29	2.4	28	75	11	70	57	10	5	27	1.54
3203920--3203978	31	1.9	30	83	10	75	62	0	0	37	0.95
3206119--3206171	23	2.4	21	78	12	61	47	1	7	43	1.42
3206222--3206246	9	2.8	9	100	0	50	48	0	0	52	1.00
3218027--3218051	13	1.9	13	100	0	50	24	0	28	48	1.52
3218117--3218166	24	2.1	24	85	7	66	62	0	0	38	0.96
3218146--3218189	20	2.3	19	82	17	56	61	2	0	36	1.09
3224982--3225130	9	15.7	9	69	18	72	64	1	4	30	1.20
3225049--3225122	29	2.5	29	83	12	89	60	1	2	35	1.19
3226259--3226296	18	2.1	18	90	0	58	44	10	0	44	1.38
3226438--3226464	7	3.9	7	100	0	54	29	0	0	70	0.88
3226609--3226640	7	4.6	7	100	0	64	15	15	0	68	1.21
3226856--3226955	30	3.3	30	69	15	80	47	7	0	46	1.30
3228083--3228203	53	2.3	53	84	2	154	19	14	37	28	1.91
3228645--3228749	40	2.6	40	78	0	120	38	22	17	21	1.93
3228810--3228894	29	2.9	29	85	0	116	22	17	17	42	1.89
3228885--3228985	29	3.5	29	84	0	121	27	13	18	39	1.89
3228855--3228987	58	2.3	58	76	5	142	27	15	18	39	1.90
3230197--3230228	15	2.0	17	88	11	50	62	3	6	28	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3236214--3236294	40	2.0	40	84	13	105	45	1	1	51	1.16
3236248--3236341	26	3.6	26	69	18	70	41	1	1	56	1.13
3236256--3236327	26	3.0	26	78	15	73	41	1	1	55	1.17
3240726--3240779	22	2.4	22	81	9	56	62	5	9	22	1.45
3254396--3254460	30	2.2	30	100	0	130	46	9	6	38	1.61
3257220--3257583	134	2.7	135	85	6	486	30	15	19	35	1.92
3258019--3258061	18	2.3	19	84	11	54	37	0	4	58	1.19
3259340--3259370	6	5.2	6	100	0	62	0	48	35	16	1.46
3273736--3273768	2	16.5	2	100	0	66	48	0	51	0	1.00
3277502--3277528	14	1.9	14	100	0	54	29	18	14	37	1.91
3279059--3279125	30	2.2	30	86	0	89	28	19	22	29	1.98
3279071--3279143	30	2.4	30	79	0	83	27	21	21	28	1.99
3288465--3288506	22	1.9	22	95	0	75	38	2	23	35	1.68
3298917--3298950	18	1.9	17	94	5	59	32	0	5	61	1.20
3308147--3308283	23	6.0	23	85	3	161	10	24	24	41	1.85
3308552--3308712	81	1.9	84	82	7	204	41	11	11	34	1.78
3314825--3314879	27	2.1	26	82	3	65	41	1	1	54	1.21
3317346--3317370	13	1.9	13	100	0	50	72	0	28	0	0.86
3317635--3317679	19	2.4	19	81	7	56	37	4	4	53	1.41
3326671--3326732	28	2.2	28	91	0	97	27	16	24	32	1.96
3327516--3327555	11	3.6	12	77	19	50	52	2	5	40	1.37
3328684--3328711	14	2.0	14	100	0	56	21	14	14	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3330763--3330842	39	2.0	40	90	2	126	30	16	23	30	1.96
3335668--3335758	39	2.3	38	83	7	112	29	17	23	29	1.97
3335685--3335764	39	2.0	40	92	2	135	28	17	23	30	1.97
3344955--3345038	36	2.3	36	100	0	168	29	41	14	14	1.85
3352156--3352212	28	2.0	30	83	13	75	36	0	5	57	1.21
3353633--3353678	17	2.6	18	83	16	69	21	0	4	73	1.00
3353633--3353687	19	3.2	17	80	14	69	23	0	3	72	1.00
3353680--3353728	18	2.9	16	78	21	55	44	0	8	46	1.33
3356288--3356329	17	2.4	17	80	15	50	52	0	23	23	1.47
3359601--3359642	18	2.3	18	83	0	57	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125