genome.fa.s6.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  22  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6695122--6695230	6	18.3	6	74	16	75	46	1	3	47	1.30
6695109--6695161	12	4.2	12	77	15	54	32	0	3	64	1.12
6695136--6695212	11	7.0	11	75	8	59	48	0	3	48	1.20
6695136--6695224	17	5.5	17	81	9	87	48	1	3	47	1.26
6695572--6696320	76	10.0	75	84	7	916	32	18	16	32	1.93
6695661--6695779	38	3.2	37	70	20	120	31	21	15	31	1.94
6695572--6696320	151	5.0	149	83	8	954	32	18	16	32	1.93
6695824--6695951	63	2.0	63	95	3	231	30	18	16	34	1.93
6695896--6696313	227	1.8	227	89	3	653	33	18	16	32	1.93
6696884--6696917	17	1.9	18	88	5	52	61	5	8	23	1.47
6708164--6708648	59	8.3	59	88	3	665	35	1	27	35	1.67
6710375--6710465	6	15.0	6	76	15	80	47	0	4	48	1.22
6710389--6710465	11	7.0	11	73	10	59	49	0	3	46	1.20
6710389--6710464	17	4.6	17	82	9	95	48	0	3	47	1.20
6710401--6710460	31	1.9	31	96	0	111	51	0	5	43	1.23
6710403--6710475	17	4.5	17	83	11	73	54	1	4	39	1.28
6718477--6718541	26	2.5	27	82	9	73	43	1	1	53	1.19
6718623--6718665	24	1.9	22	86	13	61	48	0	4	46	1.22
6718787--6718827	18	2.3	18	91	4	66	56	0	2	41	1.13
6719336--6720123	390	2.0	390	95	0	1432	38	19	12	29	1.89
6720380--6720414	6	5.8	6	93	0	52	40	17	25	17	1.90
6720378--6720416	12	3.2	12	85	0	60	43	15	25	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6720378--6720416	18	2.2	18	95	0	69	43	15	25	15	1.86
6723886--6723920	4	9.0	4	87	6	54	22	25	51	0	1.48
6727804--6727879	27	2.8	27	77	0	71	47	31	1	19	1.58
6730711--6730751	18	2.4	17	87	4	55	63	7	0	29	1.21
6730830--6730894	30	2.2	30	88	0	94	56	15	4	23	1.57
6730971--6731010	20	1.9	22	90	10	66	70	12	7	10	1.35
6731449--6731516	28	2.3	31	75	17	79	29	11	39	19	1.87
6731456--6731516	28	2.2	28	90	0	95	27	13	40	18	1.87
6733867--6734106	52	4.6	52	92	1	365	26	15	23	35	1.94
6734813--6734882	21	3.3	21	82	7	72	25	15	24	34	1.95
6740419--6740454	5	7.0	5	93	6	63	0	61	0	38	0.96
6740413--6740454	15	2.7	16	88	7	68	0	64	0	35	0.94
6745120--6745237	58	2.0	58	91	3	193	47	18	0	33	1.49
6751420--6751870	59	7.7	59	79	5	198	33	3	30	32	1.76
6751462--6751857	29	13.4	29	64	20	126	34	2	28	34	1.71
6751462--6751563	30	3.5	29	74	6	89	33	1	29	35	1.69
6751457--6751857	59	6.8	59	79	7	390	33	2	29	34	1.72
6751492--6751581	30	3.1	28	70	19	76	33	1	31	34	1.65
6751463--6751886	118	3.6	117	79	7	450	33	3	28	34	1.73
6751785--6751915	29	4.5	28	71	22	76	35	6	26	32	1.81
6753834--6753889	12	4.8	12	78	12	62	60	5	0	33	1.19
6753813--6753907	35	2.7	33	75	12	91	55	4	1	38	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6753839--6753886	23	2.1	23	88	0	69	60	6	0	33	1.22
6753842--6753906	17	3.8	17	72	11	60	60	6	0	33	1.22
6754293--6754648	38	9.4	37	65	17	140	32	18	15	33	1.92
6754170--6755229	76	14.1	76	88	4	1504	32	18	15	34	1.92
6767128--6767494	59	6.3	59	84	5	467	35	3	27	33	1.73
6767128--6767493	118	3.1	116	86	3	518	35	3	27	33	1.73
6767128--6767494	177	2.1	176	88	2	540	35	3	27	33	1.73
6767128--6767550	29	14.4	28	66	22	119	35	3	26	34	1.74
6767976--6768006	2	15.5	2	100	0	62	48	0	0	51	1.00
6769425--6769534	17	6.5	16	79	14	98	54	1	1	41	1.21
6769444--6769534	6	16.0	6	69	17	61	56	2	1	40	1.19
6769438--6769534	35	2.8	35	83	9	121	56	2	1	40	1.18
6769969--6770017	2	25.5	2	91	8	84	51	0	0	48	1.00
6782145--6782192	18	2.9	18	67	20	50	41	2	8	47	1.45
6784403--6784452	15	3.5	15	72	22	54	64	4	0	32	1.12
6785767--6785820	24	2.2	24	96	0	99	38	25	5	29	1.79
6788358--6788432	18	4.2	18	70	17	50	58	1	4	36	1.25
6788450--6788513	19	3.4	18	77	12	58	65	4	1	28	1.21
6789078--6789144	33	2.0	34	82	2	82	49	2	5	41	1.42
6805754--6805796	17	2.4	18	80	11	52	32	2	6	58	1.38
6810637--6810692	28	2.0	28	82	0	67	50	10	16	23	1.76
6811078--6811123	20	2.3	20	81	7	58	23	28	0	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6811090--6811130	20	2.0	21	85	4	57	24	31	0	43	1.54
6813737--6813762	12	2.2	12	100	0	52	23	7	0	69	1.14
6826367--6826482	57	2.0	57	98	0	223	57	9	6	25	1.55
6834885--6834963	37	2.1	38	80	2	88	32	25	18	22	1.97
6835091--6835129	6	6.5	6	93	0	69	20	30	0	48	1.50
6835280--6835325	22	2.1	22	100	0	92	32	17	4	45	1.68
6835284--6835333	22	2.5	20	87	12	68	34	20	4	42	1.70
6839435--6839479	19	2.3	20	77	11	58	37	2	4	55	1.32
6840277--6840335	30	2.0	30	86	6	84	25	0	5	69	1.09
6849801--6849835	18	1.9	18	88	11	54	45	11	14	28	1.79
6852604--6852632	13	2.1	14	93	6	51	31	0	0	68	0.89
6863686--6864071	204	1.9	204	93	0	673	13	29	19	37	1.90
6865006--6865039	17	2.0	17	94	0	59	29	8	23	38	1.85
6869704--6869739	17	2.1	17	100	0	72	30	5	25	38	1.78
6871331--6872156	279	3.0	279	96	2	1480	34	25	20	19	1.96
6874035--6874111	28	2.8	28	83	13	81	50	6	1	41	1.36
6878849--6879299	223	2.0	223	99	0	893	34	27	21	17	1.95
6886219--6886277	25	2.5	23	79	12	66	57	0	3	38	1.15
6886234--6886294	25	2.4	25	88	0	86	59	1	1	37	1.17
6886211--6886278	25	3.0	22	73	21	59	57	0	2	39	1.14
6886656--6886705	13	3.2	16	70	18	52	48	0	0	52	1.00
6893107--6893141	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6906914--6907033	58	2.1	58	90	3	188	48	17	0	34	1.48
6907675--6907727	16	3.3	16	80	15	56	49	0	0	50	1.00
6908480--6908509	6	5.0	6	91	0	51	50	0	30	20	1.49
6914817--6914850	14	2.4	14	90	0	50	32	0	2	64	1.08
6915574--6915615	12	3.5	12	83	0	57	52	0	23	23	1.47
6915583--6915634	23	2.2	23	83	10	61	50	0	19	30	1.48
6917791--6917841	21	2.4	21	90	0	84	41	23	17	17	1.90
6918433--6918507	24	3.1	24	84	0	96	33	22	16	28	1.95
6919263--6919300	18	2.1	18	90	9	60	26	10	13	50	1.73
6920784--6920818	14	2.4	15	90	4	54	51	17	0	31	1.45
6922421--6922475	20	2.8	20	85	0	65	27	9	32	30	1.88
6923739--6923790	21	2.5	21	81	6	61	34	26	11	26	1.91
6924543--6924996	201	2.3	195	81	7	517	24	26	20	27	1.99
6926046--6926096	3	17.3	3	95	4	95	68	0	0	31	0.90
6927146--6927202	7	8.4	7	78	7	55	33	26	24	15	1.95
6927143--6927202	20	3.0	20	87	0	93	36	25	23	15	1.93
6927201--6927270	21	3.4	20	80	5	77	28	28	22	20	1.98
6927200--6927270	10	6.9	10	71	6	61	28	28	23	19	1.99
6927307--6927336	15	2.0	15	93	0	51	20	3	33	43	1.68
6927320--6927387	21	3.2	21	91	2	109	22	0	33	44	1.53
6927775--6927820	18	2.6	17	86	6	74	69	0	21	8	1.15
6933219--6933251	3	11.3	3	93	6	59	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6934298--6934379	20	4.1	20	91	0	137	37	24	23	14	1.92
6934308--6934371	13	4.8	13	75	11	67	37	25	21	15	1.93
6934301--6934386	7	12.7	7	79	7	88	36	25	23	15	1.94
6934394--6934441	10	4.7	10	81	2	60	22	29	29	18	1.98
6934478--6934507	15	2.0	15	93	0	51	20	3	33	43	1.68
6934491--6934558	21	3.2	21	91	2	109	22	0	33	44	1.53
6934948--6935009	18	3.5	18	91	2	90	67	0	20	11	1.21
6934948--6935020	36	2.0	36	81	5	85	67	0	21	10	1.22
6937027--6937071	23	1.9	23	86	13	65	17	0	4	77	0.92
6937025--6937073	16	3.1	15	77	16	55	20	0	4	75	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125