genome.fa.s6.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  32  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9102502--9102566	29	2.2	30	86	2	87	32	1	6	60	1.31
9102829--9102914	9	9.3	9	74	13	50	34	0	4	60	1.17
9102828--9102898	28	2.5	28	79	0	88	32	0	5	61	1.19
9102830--9102882	18	2.9	18	80	5	61	33	0	3	62	1.13
9102827--9102914	37	2.4	37	79	7	99	35	0	4	60	1.17
9102837--9102923	28	3.2	28	80	7	90	34	0	5	59	1.21
9107017--9107086	15	5.1	14	72	19	58	5	8	21	64	1.43
9107009--9107065	25	2.3	25	84	0	69	3	10	22	63	1.42
9109300--9109335	18	2.0	18	94	0	63	25	27	19	27	1.99
9109505--9109540	19	1.9	18	88	5	54	41	2	0	55	1.14
9109522--9109576	14	3.9	14	75	15	60	50	1	0	47	1.11
9109527--9109556	15	1.9	16	93	6	53	56	3	0	40	1.16
9109560--9109623	24	2.7	23	80	17	71	43	1	1	53	1.19
9109609--9109662	15	3.6	15	70	9	56	50	1	1	46	1.23
9109600--9109659	30	1.9	30	86	10	84	48	1	1	48	1.21
9109604--9109706	23	4.5	23	73	17	90	49	0	2	46	1.23
9116714--9117015	158	1.9	158	82	1	381	29	24	22	22	1.99
9120418--9120472	21	2.6	21	97	0	101	32	38	10	18	1.85
9121243--9121721	41	11.7	41	86	3	502	22	26	27	23	1.99
9123762--9123801	18	2.2	18	86	0	53	50	2	5	42	1.37
9125582--9125612	15	2.1	15	100	0	62	35	38	12	12	1.82
9127140--9127313	8	18.9	9	67	21	51	44	2	2	49	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9127226--9127302	12	6.6	12	67	15	54	48	1	1	49	1.17
9127083--9127680	112	5.3	111	94	1	953	45	3	4	46	1.38
9127672--9127800	22	6.3	22	64	24	68	45	2	0	51	1.13
9127562--9127790	12	18.6	12	64	22	84	45	2	2	49	1.26
9127083--9127749	112	6.0	110	92	2	700	45	2	4	47	1.37
9127083--9127749	224	3.0	224	87	4	874	45	2	4	47	1.37
9133205--9133361	66	2.4	66	89	0	233	42	17	25	14	1.87
9133348--9133385	11	3.5	11	80	20	53	28	23	47	0	1.52
9133347--9133389	21	2.0	21	100	0	86	27	23	48	0	1.51
9133353--9133399	21	2.2	21	88	0	67	36	21	42	0	1.53
9133600--9133628	15	1.9	15	100	0	58	13	3	34	48	1.60
9133996--9134031	2	18.5	2	88	5	56	50	0	0	50	1.00
9137411--9137451	20	2.0	20	85	4	55	63	0	2	34	1.08
9139143--9139610	98	4.8	98	87	4	633	34	16	15	32	1.91
9139603--9139667	29	2.3	29	89	2	96	40	18	16	24	1.91
9142811--9142885	21	3.6	21	75	10	73	30	14	24	30	1.95
9148578--9148612	7	5.0	7	86	13	54	60	0	40	0	0.97
9149660--9149721	20	3.2	20	78	19	60	35	0	4	59	1.19
9149642--9149751	29	3.8	29	69	16	79	37	0	3	59	1.15
9150423--9150485	8	7.9	8	75	10	58	23	0	3	73	0.98
9150423--9150462	17	2.4	17	87	8	55	20	0	5	75	0.99
9150422--9150483	25	2.5	24	82	10	72	22	0	3	74	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9171248--9171339	48	1.9	48	90	0	148	25	38	21	15	1.92
9181962--9181995	16	2.1	16	88	0	50	41	2	8	47	1.50
9184808--9184912	38	2.8	38	83	1	122	41	17	20	20	1.90
9186013--9186070	21	2.8	21	84	5	64	29	17	17	36	1.92
9190337--9190368	7	4.6	7	100	0	64	56	0	0	43	0.99
9192321--9192372	24	2.2	24	92	0	86	63	7	1	26	1.32
9200212--9200329	27	4.2	27	94	4	191	42	11	15	30	1.83
9200967--9200996	11	2.6	12	94	5	53	26	0	0	73	0.84
9202241--9202377	30	4.6	30	84	6	163	43	21	2	32	1.68
9214004--9214130	50	2.6	50	86	3	168	36	18	25	19	1.95
9214004--9214162	50	3.2	50	78	7	137	35	20	23	20	1.96
9214187--9214502	40	8.0	40	78	7	270	34	25	15	23	1.95
9214187--9214516	118	2.8	118	83	6	407	33	25	15	24	1.95
9216801--9216833	2	16.5	2	93	0	57	51	0	0	48	1.00
9217556--9217613	6	10.0	6	77	7	57	53	3	0	43	1.17
9217564--9217619	18	3.3	17	80	7	69	57	3	0	39	1.16
9218013--9218042	11	2.6	12	94	5	53	26	0	0	73	0.84
9218938--9218994	28	2.1	28	87	6	82	31	1	24	42	1.65
9219275--9219411	30	4.6	30	79	8	129	43	21	2	32	1.67
9219275--9219411	60	2.3	58	76	8	143	43	21	2	32	1.67
9222122--9222169	6	8.0	6	97	0	78	33	4	33	29	1.77
9222396--9222427	4	8.0	4	92	0	55	25	3	25	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9224967--9225061	46	2.1	46	89	0	145	22	5	10	62	1.47
9226492--9226582	45	2.0	47	89	4	141	25	3	9	61	1.42
9227609--9227642	7	4.9	7	100	0	68	44	26	0	29	1.55
9246018--9246044	9	3.0	9	100	0	54	66	0	33	0	0.92
9246423--9246567	59	2.4	59	77	3	139	35	24	3	35	1.73
9246423--9246586	30	5.6	30	72	8	86	34	24	3	37	1.73
9257522--9257654	48	2.8	47	84	2	167	40	14	22	22	1.90
9257689--9257759	37	1.9	37	91	0	115	36	15	21	26	1.93
9257493--9258040	172	3.3	166	86	6	741	37	17	20	24	1.93
9257847--9257986	48	2.9	48	86	0	181	37	14	22	25	1.92
9257726--9258096	172	2.2	172	90	1	566	37	16	21	24	1.93
9258152--9258410	76	3.3	76	71	17	256	38	20	18	22	1.93
9258069--9258411	161	2.1	161	90	2	546	38	18	19	23	1.93
9257849--9258357	209	2.4	211	79	11	587	38	17	20	23	1.93
9258228--9258821	208	2.9	204	82	4	710	38	16	20	24	1.92
9260700--9260852	30	5.2	28	79	11	146	37	27	1	33	1.68
9260698--9260869	59	2.9	58	77	9	179	37	26	1	34	1.67
9260700--9260871	30	5.8	29	80	6	103	37	25	1	35	1.67
9263158--9263216	29	2.0	30	90	3	93	33	0	11	54	1.37
9263158--9263216	30	2.0	28	87	9	82	33	0	11	54	1.37
9263751--9263815	31	2.2	30	83	5	78	49	4	3	43	1.39
9264145--9264175	16	1.9	16	93	0	53	35	6	3	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9264157--9264244	29	3.0	28	70	15	79	44	4	7	43	1.54
9266547--9266831	146	2.0	146	88	5	425	36	18	11	33	1.86
9269270--9269382	23	4.9	22	71	15	77	52	3	0	44	1.18
9272782--9273883	550	2.0	550	99	0	2168	32	15	17	33	1.92
9274718--9274764	18	2.6	18	76	6	51	31	25	17	25	1.97
9286058--9286094	13	2.7	14	87	4	58	32	2	0	64	1.07
9287577--9287615	11	3.5	11	100	0	78	30	38	7	23	1.83
9291035--9291070	3	12.3	3	88	5	56	33	0	0	66	0.92
9291037--9291076	17	2.4	17	91	4	64	30	0	0	70	0.88
9291317--9291358	20	2.1	21	91	8	70	38	0	0	61	0.96
9291315--9291388	23	3.2	23	74	12	62	41	1	0	56	1.07
9295455--9295492	2	19.5	2	94	5	69	50	0	0	50	1.00
9298534--9298559	9	2.9	9	100	0	52	57	19	11	11	1.63
9299460--9299496	5	7.4	5	93	0	65	24	18	16	40	1.90
9301277--9301315	20	2.0	20	84	0	51	53	17	2	25	1.56
9301352--9301400	24	2.0	24	100	0	98	20	8	12	59	1.58
9303390--9303504	58	2.0	58	98	0	221	40	19	17	23	1.91
9307120--9307195	34	2.2	34	90	0	116	30	21	0	48	1.50
9318689--9318726	17	2.2	17	90	0	58	63	10	26	0	1.27
9329325--9329371	15	3.1	15	93	0	76	51	0	2	46	1.13
9334999--9335055	20	3.0	20	74	23	59	50	0	5	43	1.24
9335008--9335088	29	2.7	30	75	20	80	49	0	3	46	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9336067--9336109	9	4.8	9	82	8	52	25	0	9	65	1.22
9336067--9336100	17	1.9	18	88	5	52	26	0	5	67	1.13
9342510--9342695	97	1.9	97	81	4	223	37	16	16	30	1.91
9342941--9343402	58	7.9	60	81	7	398	39	3	25	30	1.74
9343003--9343391	29	13.3	30	69	16	228	40	2	26	30	1.69
9343003--9343430	58	7.3	59	87	4	501	39	2	26	31	1.69
9343003--9343430	117	3.7	117	84	5	526	39	2	26	31	1.69
9343331--9343439	29	3.7	29	74	14	100	36	0	29	33	1.64
9345121--9345158	17	2.2	17	90	0	58	57	2	0	39	1.12
9345538--9345674	39	3.5	39	72	0	121	22	20	31	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125