genome.fa.s6.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  119  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37301769--37301801	17	1.9	17	100	0	66	42	0	0	57	0.98
37303762--37303874	30	3.7	31	89	4	160	36	20	1	41	1.63
37303857--37303973	60	2.0	58	80	9	130	27	25	7	39	1.83
37304073--37304118	15	3.0	16	75	12	51	23	15	6	54	1.64
37304058--37304118	30	2.0	30	84	9	79	21	16	8	54	1.68
37305807--37306060	59	4.3	57	78	11	237	37	2	27	33	1.71
37305833--37306018	30	6.3	30	66	20	88	37	2	26	33	1.71
37305833--37306058	118	1.9	118	88	1	337	35	2	27	33	1.71
37305873--37306026	30	5.2	29	68	20	104	37	2	24	35	1.70
37305833--37306075	59	4.1	58	85	5	283	36	2	27	33	1.72
37305798--37306075	118	2.3	116	80	8	319	35	3	28	32	1.74
37306048--37306104	29	2.0	29	82	6	71	31	5	24	38	1.78
37306938--37306980	22	2.0	21	90	4	68	55	6	0	37	1.27
37307710--37307744	18	1.9	18	94	0	61	20	8	14	57	1.63
37307762--37307840	17	4.7	17	67	9	54	51	3	3	40	1.38
37309822--37309860	19	2.1	18	85	4	51	35	2	0	61	1.10
37311718--37311751	13	2.8	12	91	8	52	79	0	0	20	0.73
37312602--37312669	30	2.4	29	80	9	77	22	8	13	55	1.65
37312671--37312781	23	4.8	23	83	3	125	40	19	11	27	1.87
37318158--37318212	19	3.0	17	77	15	56	60	1	3	34	1.25
37322234--37322305	34	2.1	34	97	0	135	13	15	37	33	1.87
37322626--37322774	49	3.2	49	63	18	129	56	12	11	20	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37322623--37322799	88	2.0	88	97	0	336	54	11	12	21	1.68
37324722--37324752	7	4.6	7	96	4	55	22	16	0	61	1.34
37326378--37326723	124	2.8	124	74	7	321	37	20	14	27	1.92
37332859--37333370	212	2.4	207	84	6	633	29	13	14	43	1.83
37343703--37343760	28	2.1	27	87	6	80	53	0	0	46	1.00
37343750--37343792	17	2.5	17	82	17	54	41	0	0	58	0.98
37343705--37343853	81	1.8	81	80	13	182	47	0	0	51	1.10
37344947--37344977	14	2.2	14	94	0	53	58	3	0	38	1.15
37352682--37352762	9	8.7	9	68	21	51	60	2	3	33	1.27
37352696--37352763	28	2.4	28	76	13	77	60	2	2	33	1.27
37352696--37352772	28	2.7	28	73	16	70	61	3	2	32	1.28
37354651--37354742	29	3.2	29	65	11	71	7	10	23	57	1.58
37354542--37354863	58	5.8	55	79	8	314	11	9	21	56	1.63
37354658--37354750	33	3.1	32	64	28	76	8	11	22	56	1.62
37354549--37354867	171	1.9	167	85	5	444	11	10	21	56	1.63
37354543--37354882	113	3.0	114	82	9	323	12	9	21	56	1.63
37360381--37360687	152	2.0	153	92	1	510	34	13	21	30	1.92
37363869--37364503	218	2.9	215	87	3	907	40	20	13	25	1.89
37365469--37365679	106	2.0	106	95	0	377	42	15	14	27	1.86
37365854--37366011	76	2.0	77	93	4	273	43	18	14	23	1.87
37371652--37371706	27	2.0	28	85	3	76	41	0	0	58	0.98
37379999--37380082	42	2.0	42	100	0	168	38	21	14	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37381837--37382532	203	3.4	201	77	11	650	45	14	12	27	1.80
37384193--37384243	13	4.1	12	76	18	50	37	3	1	56	1.29
37384491--37384528	17	2.1	19	85	9	53	39	2	0	57	1.12
37385048--37385085	20	1.9	20	88	0	58	52	2	0	44	1.14
37392562--37392606	19	2.4	19	82	10	56	44	2	0	53	1.13
37392563--37392616	20	2.7	21	76	23	62	44	1	0	53	1.11
37394079--37394123	19	2.4	19	82	14	58	48	0	4	46	1.22
37395520--37395556	14	2.4	16	78	13	51	67	2	0	29	1.04
37403723--37403834	58	1.9	58	96	0	206	30	17	13	38	1.88
37410456--37410664	104	2.0	104	100	0	418	33	18	15	33	1.92
37418984--37419015	2	16.0	2	100	0	64	50	0	50	0	1.00
37420361--37420408	24	2.0	24	84	8	62	20	33	0	45	1.52
37422622--37423254	314	2.0	313	89	2	977	42	12	12	33	1.80
37430758--37430848	47	1.9	47	88	0	137	42	14	12	30	1.82
37432985--37433023	16	2.4	16	100	0	78	33	46	12	7	1.71
37443628--37443684	15	3.7	15	80	13	62	77	1	1	19	0.95
37453727--37453772	14	3.2	15	79	14	53	47	0	0	52	1.00
37481329--37481426	49	2.0	49	100	0	196	34	8	16	40	1.78
37481700--37481738	17	2.2	17	90	4	60	58	20	2	17	1.50
37496534--37496654	59	2.1	59	95	0	215	26	17	23	32	1.97
37505863--37505909	18	2.6	18	80	6	51	42	0	2	55	1.12
37512135--37512187	21	2.5	21	100	0	106	58	0	9	32	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37512203--37512243	21	2.0	21	90	0	64	46	7	9	36	1.65
37512201--37512246	21	2.3	19	79	13	56	50	6	8	34	1.59
37512234--37512272	19	1.9	19	85	10	51	48	7	0	43	1.31
37512326--37512354	14	2.1	14	100	0	58	51	13	0	34	1.42
37514916--37515084	23	7.3	23	89	2	207	12	23	23	41	1.88
37517330--37517377	23	2.1	23	84	0	60	22	2	20	54	1.55
37526637--37526671	3	11.7	3	100	0	70	0	31	0	68	0.90
37530045--37530079	18	1.9	18	88	0	52	45	2	5	45	1.41
37541606--37542100	170	2.9	169	86	6	629	27	11	16	44	1.82
37544351--37544385	18	1.9	18	88	0	52	14	2	2	80	0.95
37544437--37544479	23	1.9	23	86	13	63	18	9	0	72	1.11
37548283--37548322	21	2.0	21	85	9	57	65	15	2	17	1.39
37548289--37548331	20	2.2	20	87	8	61	65	9	4	20	1.40
37551029--37551075	17	2.7	18	81	18	64	55	2	0	42	1.12
37560591--37560648	30	1.9	30	83	13	75	55	5	13	25	1.59
37564956--37565000	13	3.6	13	83	16	60	6	4	13	75	1.15
37568168--37568212	6	7.5	6	84	0	54	13	28	2	55	1.50
37569290--37569560	133	2.0	131	82	3	328	39	21	8	29	1.84
37580490--37580524	2	18.0	2	88	5	54	51	2	0	45	1.16
37587630--37587686	20	3.2	19	71	24	52	50	0	3	45	1.18
37588467--37588506	21	1.9	21	85	10	55	27	2	5	65	1.27
37599284--37599317	8	4.2	8	96	0	59	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37600377--37600403	7	3.9	7	100	0	54	11	0	44	44	1.39
37601658--37601755	39	2.6	36	76	9	97	40	1	1	57	1.12
37603652--37603713	27	2.3	26	78	10	63	45	8	4	41	1.55
37610769--37610794	6	4.3	6	100	0	52	30	34	15	19	1.93
37613426--37613745	164	2.0	164	94	0	559	27	10	20	41	1.86
37618270--37618371	47	2.2	47	85	0	132	42	9	12	35	1.76
37625798--37625824	2	13.5	2	100	0	54	0	0	48	51	1.00
37629128--37629292	6	27.5	6	69	0	87	35	6	29	28	1.81
37629134--37629310	30	6.1	30	83	7	231	35	6	29	28	1.83
37629164--37629287	54	2.3	54	95	0	221	38	5	29	26	1.79
37629196--37629330	54	2.5	53	85	4	164	35	5	30	28	1.81
37639885--37639960	39	1.9	39	89	5	118	31	28	10	28	1.90
37653425--37653452	2	14.0	2	100	0	56	50	0	0	50	1.00
37664761--37664914	30	5.2	29	80	4	157	36	25	4	33	1.76
37667638--37667692	22	2.5	22	85	5	76	16	30	27	25	1.96
37668452--37668515	30	2.1	30	85	0	83	57	12	3	26	1.50
37670818--37670847	5	5.8	5	96	4	51	20	0	3	76	0.92
37670844--37670901	30	2.0	29	83	10	73	37	0	6	55	1.27
37671634--37671693	21	2.8	22	85	7	61	15	8	1	75	1.12
37671643--37671673	16	1.9	16	93	0	53	16	6	0	77	0.97
37674944--37674996	24	2.2	24	93	0	88	39	16	32	11	1.85
37675000--37675060	22	2.8	22	89	0	95	44	26	19	9	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37682617--37682641	5	5.0	5	100	0	50	20	20	40	20	1.92
37683275--37683304	2	15.0	2	100	0	60	50	0	0	50	1.00
37689234--37689446	109	2.0	109	84	3	286	43	11	9	35	1.75
37690130--37690234	54	1.9	54	86	0	147	23	22	20	32	1.98
37715676--37715709	3	11.3	3	100	0	68	67	0	0	32	0.91
37717059--37717096	17	2.2	17	90	4	58	5	31	0	63	1.17
37718015--37718052	18	2.2	17	95	4	67	63	0	31	5	1.17
37718021--37718065	18	2.5	18	81	0	54	75	0	22	2	0.91
37730837--37731063	36	6.3	36	87	0	229	16	12	53	17	1.72
37730849--37731060	72	2.9	72	83	0	253	16	13	52	16	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125