genome.fa.s6.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  114  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35213987--35214075	19	4.8	18	74	24	78	28	1	4	66	1.18
35213987--35214069	27	3.0	27	88	10	116	27	1	4	66	1.19
35213986--35214089	9	11.0	9	73	12	75	27	1	4	65	1.23
35214749--35214781	17	1.9	17	93	0	57	33	6	6	54	1.50
35214942--35215009	32	2.1	33	83	10	86	52	1	0	45	1.09
35215360--35215394	17	2.0	18	88	5	54	34	0	0	65	0.93
35215369--35215407	20	2.0	20	89	0	60	28	0	2	69	1.02
35215360--35215424	19	3.6	18	78	10	60	38	0	1	60	1.07
35215475--35215630	75	2.1	73	82	11	183	53	3	6	37	1.43
35219537--35219564	14	2.0	14	100	0	56	21	0	14	64	1.29
35219926--35219954	15	1.9	15	100	0	58	27	24	0	48	1.51
35223115--35223160	19	2.4	18	79	10	56	28	2	6	63	1.31
35239054--35239117	12	5.3	12	84	0	74	12	42	0	45	1.42
35239058--35239115	18	3.2	18	90	0	89	13	41	0	44	1.44
35246183--35246237	12	4.7	12	88	4	85	21	18	16	43	1.88
35247347--35247493	10	14.5	10	65	14	52	62	3	4	29	1.30
35251056--35251096	19	2.2	19	86	0	55	12	0	12	75	1.05
35251139--35251202	24	2.7	23	79	13	76	46	20	12	20	1.82
35256494--35256537	14	3.3	13	81	12	54	59	2	0	38	1.10
35261363--35261402	21	1.9	21	84	0	53	65	2	7	25	1.32
35263957--35263981	8	3.1	8	100	0	50	0	12	0	88	0.53
35264401--35264447	23	2.0	23	95	0	85	51	19	8	21	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35268547--35268620	31	2.4	31	86	2	105	43	14	12	29	1.82
35269808--35269850	18	2.4	18	88	7	61	46	0	0	53	1.00
35278143--35278185	19	2.3	18	81	14	52	48	0	0	51	1.00
35296651--35296695	19	2.5	19	82	7	58	17	20	8	53	1.70
35300884--35300923	6	6.7	6	97	0	71	37	12	0	50	1.41
35302152--35302199	15	3.4	15	72	16	57	64	4	8	22	1.38
35302154--35302207	27	2.0	27	96	0	99	61	5	7	25	1.45
35309054--35309079	1	26.0	1	100	0	52	0	100	0	0	0.00
35309290--35309322	2	16.5	2	100	0	66	48	0	0	51	1.00
35314770--35314849	20	4.2	19	71	10	65	65	2	3	28	1.23
35314782--35314873	28	3.2	28	71	13	71	68	3	3	25	1.20
35315409--35315468	19	3.2	19	79	11	61	30	1	1	66	1.11
35315412--35315468	21	3.1	18	74	16	53	29	1	1	66	1.12
35315419--35315488	20	3.4	20	76	11	63	37	1	2	58	1.22
35315664--35315696	16	2.1	16	88	5	50	24	0	0	75	0.80
35315651--35315697	22	2.1	22	84	7	60	27	0	0	72	0.85
35315651--35315690	21	1.9	22	85	10	57	25	0	0	75	0.81
35320503--35320554	3	17.3	3	95	0	95	67	1	0	30	1.02
35328662--35328850	95	2.0	95	97	0	360	35	26	13	24	1.92
35332672--35332739	30	2.2	31	89	7	104	48	5	17	27	1.70
35333744--35333821	38	2.1	38	100	0	156	28	15	10	46	1.78
35334868--35334902	12	3.0	11	88	12	52	28	51	0	20	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35339955--35340106	75	2.0	75	96	1	279	19	13	17	49	1.80
35342059--35342121	13	4.9	12	75	12	54	41	1	17	39	1.59
35342059--35342121	26	2.4	26	82	12	76	41	1	17	39	1.59
35342076--35342121	13	3.5	13	83	16	60	47	2	15	34	1.57
35342497--35342539	16	2.4	18	81	18	54	39	4	0	55	1.20
35342504--35342539	16	2.1	18	90	10	58	36	5	0	58	1.22
35349275--35349312	3	12.7	3	94	0	67	34	63	0	2	1.09
35350905--35350952	23	2.1	23	84	0	60	58	16	6	18	1.59
35351944--35352047	31	3.4	30	82	7	104	51	7	0	39	1.37
35351975--35352047	29	2.4	29	88	6	101	52	6	1	39	1.37
35361902--35361996	47	2.0	47	100	0	190	23	14	14	47	1.81
35364001--35364036	3	12.0	3	100	0	72	33	0	0	66	0.92
35365369--35365411	21	2.2	21	88	12	65	48	13	4	32	1.63
35365730--35365759	6	5.0	6	91	0	51	20	16	46	16	1.84
35365820--35365846	10	2.7	10	100	0	54	77	7	0	14	0.97
35374000--35374024	10	2.5	10	100	0	50	36	0	0	64	0.94
35382595--35382651	28	2.0	28	83	6	71	31	3	1	63	1.22
35382721--35382804	38	2.2	38	78	6	89	27	8	3	60	1.42
35382846--35382887	17	2.5	16	82	17	50	30	2	2	64	1.19
35389372--35389710	167	2.0	167	98	0	651	32	16	21	28	1.95
35390682--35390944	59	4.5	59	88	3	370	33	3	31	31	1.76
35390682--35390937	30	8.7	29	67	24	103	33	3	31	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35390684--35390942	119	2.2	117	86	4	360	33	3	30	31	1.76
35391526--35391561	9	3.9	9	88	3	54	22	44	0	33	1.53
35392112--35392145	3	11.0	3	87	6	50	38	0	0	61	0.96
35392114--35392142	10	3.0	10	95	5	51	41	0	0	58	0.98
35392958--35393051	6	15.8	6	70	17	63	55	3	2	39	1.28
35392959--35393038	17	4.9	17	81	9	94	57	2	2	37	1.26
35392965--35393044	11	6.9	11	72	10	52	57	2	2	37	1.26
35392959--35393017	31	1.9	31	92	0	100	55	1	3	38	1.26
35392997--35393052	28	2.0	29	89	3	87	57	3	1	37	1.27
35415812--35415862	18	2.9	17	72	18	50	54	3	3	37	1.37
35418395--35418419	10	2.5	10	100	0	50	84	0	0	16	0.63
35420373--35420408	18	2.0	18	88	0	54	44	0	16	38	1.48
35426595--35426665	30	2.4	31	79	15	78	46	7	2	43	1.45
35426595--35426674	30	2.6	30	78	11	74	43	6	2	47	1.41
35429461--35429523	26	2.3	27	78	13	67	52	0	6	41	1.27
35435974--35436087	29	3.9	29	86	2	147	36	25	0	37	1.56
35435974--35436094	30	4.1	30	83	7	149	35	27	0	36	1.63
35436046--35436183	30	4.6	30	79	3	127	28	30	7	34	1.84
35438711--35438760	20	2.4	22	90	6	77	50	0	2	48	1.12
35438711--35438760	11	4.7	11	82	9	68	50	0	2	48	1.12
35438718--35438782	31	2.1	32	88	5	98	47	1	0	50	1.10
35438916--35439113	99	2.0	99	87	0	288	24	30	7	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35445917--35445942	8	3.2	8	100	0	52	26	0	0	73	0.84
35449828--35449959	66	2.0	66	98	0	255	37	20	13	28	1.91
35452211--35452404	23	8.3	23	80	8	180	43	21	23	11	1.85
35452211--35452404	69	2.8	68	82	10	205	43	21	23	11	1.85
35454514--35454597	42	2.0	42	100	0	168	11	26	2	59	1.45
35463125--35463190	2	33.0	2	100	0	132	50	0	0	50	1.00
35469753--35469783	3	10.3	3	100	0	62	64	0	0	35	0.94
35474209--35474249	21	2.0	21	85	0	55	31	0	4	63	1.15
35476581--35476619	20	2.0	20	85	10	53	28	0	2	69	1.02
35484828--35485011	59	3.1	59	85	4	167	36	7	25	30	1.83
35484905--35485066	28	5.4	32	72	17	127	35	3	27	34	1.73
35484934--35485066	30	4.6	28	78	8	142	33	3	27	35	1.72
35484874--35485066	59	3.3	59	87	3	248	35	4	26	34	1.76
35484986--35485144	29	5.4	30	80	6	137	36	1	25	36	1.67
35485018--35485167	59	2.6	58	82	6	160	36	2	24	37	1.67
35484988--35485163	30	6.0	30	80	6	157	35	1	24	38	1.66
35487030--35487084	6	9.7	6	78	11	62	54	3	0	41	1.18
35487029--35487084	11	5.0	11	82	8	69	55	3	0	41	1.17
35487029--35487086	5	10.6	5	80	14	53	53	3	0	43	1.17
35487030--35487084	17	3.2	17	86	0	83	54	3	0	41	1.18
35489441--35489491	15	3.4	14	84	10	66	56	1	0	41	1.10
35490633--35490690	14	4.4	14	65	12	50	39	12	15	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35493745--35493787	23	1.9	22	90	4	68	41	0	0	58	0.98
35496742--35496787	22	2.1	22	84	8	58	60	0	2	36	1.09
35499337--35499361	3	8.3	3	100	0	50	0	32	0	68	0.90
35509440--35509499	31	2.0	31	90	3	95	43	5	11	40	1.63
35515162--35515206	22	2.0	23	82	8	56	28	2	13	55	1.50
35516150--35516246	33	3.0	32	83	4	124	36	15	13	35	1.87
35517065--35517104	16	2.4	16	84	15	55	12	0	12	75	1.06
35521005--35521050	23	2.0	23	100	0	92	8	30	8	52	1.62
35526625--35526667	22	1.9	23	90	4	70	48	0	4	46	1.22
35532570--35532612	2	22.5	2	90	9	72	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125