genome.fa.s6.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  85  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26279294--26279323	12	2.5	12	94	0	51	70	0	30	0	0.88
26288246--26288290	23	2.0	23	91	8	74	68	6	15	8	1.36
26291286--26291321	15	2.5	15	95	4	65	58	5	13	22	1.56
26296453--26296507	23	2.4	23	87	0	74	21	20	27	30	1.98
26306213--26306258	16	2.8	17	87	6	60	19	2	6	71	1.18
26307950--26307985	16	2.2	16	95	0	63	22	5	13	58	1.56
26317914--26317941	13	2.2	13	100	0	56	50	0	0	50	1.00
26320137--26320237	38	2.6	40	71	10	100	21	19	28	29	1.98
26322175--26322214	6	6.7	6	97	0	71	17	35	30	17	1.93
26322641--26322693	6	8.8	6	87	8	81	16	1	15	66	1.35
26322766--26322842	26	2.9	26	76	3	73	57	9	1	32	1.38
26323114--26323148	15	2.3	15	95	0	61	31	0	0	68	0.90
26323164--26323293	57	2.3	56	80	7	149	36	2	5	56	1.35
26323407--26323459	15	3.6	14	75	14	54	18	0	11	69	1.17
26323476--26323610	27	5.0	27	87	0	180	20	30	30	18	1.97
26323495--26323610	54	2.1	54	100	0	232	19	31	31	17	1.95
26324867--26324899	3	11.0	3	100	0	66	0	33	0	66	0.92
26325537--26325631	37	2.6	37	86	0	127	25	30	20	24	1.98
26325732--26325789	26	2.3	26	90	3	91	29	20	24	25	1.99
26330071--26330164	38	2.5	37	87	3	143	28	28	17	25	1.97
26330184--26330261	38	2.1	38	85	2	104	30	26	12	29	1.93
26330279--26330333	26	2.1	26	86	0	74	30	27	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26331108--26331138	16	1.9	16	93	0	53	22	16	0	61	1.34
26335548--26335593	20	2.2	21	85	11	60	30	10	26	32	1.90
26338628--26338673	22	2.0	25	87	12	71	52	0	10	36	1.37
26342805--26342964	34	4.7	34	84	1	196	34	10	14	41	1.79
26342805--26342964	68	2.4	67	86	5	216	34	10	14	41	1.79
26352245--26352278	17	2.0	17	88	0	50	38	2	0	58	1.13
26357385--26357444	29	2.1	29	96	0	111	30	11	25	33	1.91
26357676--26358955	318	4.0	318	99	0	2519	34	12	20	33	1.89
26362589--26362618	15	1.9	16	93	6	53	70	0	0	30	0.88
26363361--26363399	12	3.2	12	85	3	51	76	0	20	2	0.90
26365504--26365588	43	2.0	43	84	9	111	32	10	9	47	1.70
26366451--26366580	14	9.3	14	72	9	79	49	25	0	24	1.56
26366521--26366573	21	2.5	21	79	14	63	54	22	0	22	1.45
26366451--26366531	7	11.6	7	78	5	74	48	25	1	24	1.59
26366472--26366553	35	2.3	35	89	0	128	48	23	0	28	1.51
26366451--26366658	56	3.7	56	78	10	192	45	26	0	26	1.60
26366451--26366581	28	4.7	28	73	7	115	48	25	0	25	1.56
26366955--26367002	4	12.5	4	91	8	82	0	25	0	75	0.81
26366961--26367002	22	1.9	22	100	0	84	0	26	0	73	0.83
26366943--26367003	26	2.3	26	88	2	95	0	29	0	70	0.88
26367207--26367240	4	8.2	4	93	6	59	0	23	0	76	0.79
26370501--26370530	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26370930--26370979	18	2.6	19	81	9	66	24	6	6	64	1.39
26375452--26375497	20	2.3	20	88	7	67	34	36	4	23	1.75
26382033--26382402	186	2.0	186	97	0	695	34	17	9	38	1.81
26384066--26384181	62	1.9	59	87	5	169	50	5	2	41	1.38
26393493--26393548	19	2.9	19	81	0	67	39	32	7	21	1.80
26394117--26394164	24	2.0	24	84	8	62	18	4	12	64	1.43
26396133--26396166	11	3.0	11	83	8	50	61	0	0	38	0.96
26396973--26397022	22	2.3	22	75	0	55	62	6	10	22	1.48
26397312--26397349	20	1.9	20	89	10	60	57	5	2	34	1.35
26397513--26397566	27	2.0	27	88	0	81	18	35	27	18	1.94
26397818--26397861	24	1.9	23	86	9	63	50	9	0	40	1.34
26397921--26397948	5	5.6	5	100	0	56	64	0	0	35	0.94
26400947--26400996	26	1.9	26	87	0	73	30	0	12	58	1.34
26401062--26401102	6	6.8	6	83	10	57	65	14	2	17	1.37
26403507--26403545	17	2.4	17	91	4	62	58	2	0	38	1.12
26404300--26404332	17	1.9	17	93	0	57	54	3	0	42	1.15
26404735--26404771	16	2.2	17	95	4	67	45	0	0	54	1.00
26409268--26409294	12	2.2	12	100	0	54	48	22	14	14	1.81
26411372--26411742	59	6.3	59	84	3	430	37	3	26	32	1.74
26411375--26411807	118	3.7	117	81	7	461	37	3	25	33	1.72
26411403--26411885	29	16.3	28	71	15	167	38	2	25	33	1.71
26411698--26411961	60	4.4	59	79	7	178	39	2	20	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26411747--26411996	30	8.4	29	81	10	256	38	2	21	38	1.68
26411652--26411996	89	3.9	88	78	8	303	38	2	21	36	1.69
26412636--26412666	14	2.1	15	94	5	55	6	9	0	83	0.79
26413058--26413104	22	2.3	20	85	10	60	46	8	2	42	1.46
26413811--26413882	17	4.2	17	71	7	65	54	5	2	37	1.39
26413822--26413887	34	1.9	35	90	3	107	57	9	3	30	1.45
26414686--26414784	48	2.1	48	100	0	198	35	12	24	28	1.91
26415709--26415775	20	3.4	19	76	17	57	26	2	2	67	1.20
26415721--26415777	26	2.2	26	83	0	69	24	1	1	71	1.04
26415719--26415777	14	4.4	14	75	10	61	25	1	1	71	1.05
26426042--26426095	26	2.1	26	89	0	81	33	18	20	27	1.96
26427721--26427980	41	6.4	40	75	7	150	35	18	21	23	1.95
26427858--26427979	41	3.0	41	91	0	208	28	23	24	22	1.99
26429628--26429670	21	2.1	20	83	12	52	41	2	0	55	1.12
26429906--26429997	41	2.2	41	84	7	132	33	18	27	20	1.96
26430622--26430648	2	13.5	2	100	0	54	48	0	0	51	1.00
26431690--26431724	15	2.3	15	100	0	70	14	5	28	51	1.65
26432285--26432447	29	5.5	29	67	13	82	49	4	2	43	1.37
26432270--26432627	121	3.0	120	90	3	535	50	5	2	41	1.38
26432591--26432620	12	2.6	12	94	5	53	43	0	0	56	0.99
26432559--26432704	46	3.2	46	72	19	146	51	4	1	43	1.29
26432435--26432840	211	1.9	212	94	0	715	50	5	2	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26432681--26432710	12	2.6	12	94	5	53	43	0	0	56	0.99
26432673--26432883	58	3.5	59	70	23	174	47	5	1	44	1.37
26432316--26432991	333	2.1	330	88	5	1023	50	5	2	42	1.38
26432646--26433050	121	3.3	121	91	1	641	51	5	2	40	1.38
26432797--26432987	58	3.2	58	69	15	158	49	6	1	42	1.37
26438729--26438785	21	2.6	22	83	2	62	38	15	42	3	1.65
26439117--26439220	43	2.4	43	84	6	122	26	18	25	29	1.98
26439141--26439229	43	2.1	43	87	4	126	22	20	26	30	1.98
26441653--26441959	80	3.8	80	82	6	339	22	18	28	30	1.97
26441653--26441967	166	1.9	166	84	3	420	22	19	27	30	1.98
26445633--26445671	20	2.0	20	89	0	60	35	15	25	23	1.94
26449385--26449435	21	2.4	21	80	6	59	33	25	15	25	1.95
26459096--26459139	21	2.0	22	82	4	54	45	2	11	40	1.53
26465656--26465711	25	2.2	26	82	17	66	71	7	1	19	1.18
26465714--26465761	20	2.5	18	77	12	51	29	22	8	39	1.83
26469113--26469196	17	4.8	17	72	4	69	36	2	8	52	1.45
26469165--26469205	18	2.4	17	87	4	55	43	0	4	51	1.23
26469637--26469725	27	3.4	25	81	9	90	48	23	6	21	1.74
26471240--26471470	30	7.7	29	74	14	168	36	19	3	40	1.69
26471238--26471469	60	3.8	60	83	6	265	36	20	3	40	1.69
26471250--26471469	90	2.4	90	79	5	223	35	20	3	40	1.68
26471454--26471648	59	3.3	59	82	1	239	29	25	5	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26471231--26471543	30	10.5	30	68	12	153	35	22	4	38	1.73
26475190--26475236	7	6.7	7	82	0	58	44	0	25	29	1.54
26475190--26475230	21	2.0	21	90	0	64	48	0	21	29	1.50
26486472--26486513	5	8.6	5	94	5	77	19	80	0	0	0.70
26489056--26489104	4	12.2	4	100	0	98	51	24	0	24	1.49
26497137--26497162	3	8.7	3	100	0	52	0	34	0	65	0.93
26498387--26498485	47	2.1	47	94	0	171	30	13	4	52	1.58
26500602--26500674	28	2.6	27	84	4	101	45	27	20	6	1.76
26503898--26503934	16	2.2	17	90	9	58	56	0	0	43	0.99
26503973--26504008	11	3.3	11	85	14	56	11	5	8	75	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125