genome.fa.s6.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  49  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15066930--15067066	2	68.5	2	100	0	274	49	0	50	0	1.00
15070219--15070243	5	5.0	5	100	0	50	20	0	20	60	1.37
15074979--15075010	4	7.8	4	93	6	55	50	0	0	50	1.00
15080909--15080948	20	2.0	20	100	0	80	40	15	15	30	1.87
15089586--15089659	30	2.5	30	82	8	89	21	25	31	21	1.98
15100850--15100917	30	2.3	30	80	7	77	39	0	20	39	1.53
15100923--15101139	30	7.4	28	75	11	141	36	2	27	33	1.70
15101045--15101179	60	2.2	61	79	6	150	37	1	22	37	1.64
15102657--15102690	16	2.2	16	89	5	52	0	5	44	50	1.26
15103214--15103562	160	2.2	160	89	1	529	25	20	17	36	1.94
15103441--15103600	85	1.9	85	86	0	230	25	23	15	35	1.94
15103368--15103786	209	2.0	208	88	1	615	22	21	18	37	1.94
15103931--15104089	50	3.2	49	76	7	151	18	30	16	34	1.93
15103862--15104089	99	2.3	99	82	1	260	17	28	17	35	1.93
15104066--15104114	25	2.0	25	91	0	80	10	32	28	28	1.90
15104104--15104426	49	6.6	48	77	6	299	19	32	15	32	1.93
15104133--15104420	98	2.9	97	86	2	371	18	32	17	31	1.94
15104104--15104426	147	2.2	147	83	3	391	19	32	15	32	1.93
15111020--15111254	59	4.0	60	80	4	219	37	3	26	32	1.73
15110897--15111262	30	12.4	30	74	9	193	37	2	25	33	1.71
15117410--15117513	27	3.9	27	86	3	122	30	25	6	36	1.82
15117423--15117513	27	3.4	26	89	3	128	28	25	6	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15119021--15119219	50	4.0	50	79	2	202	35	16	23	25	1.95
15119128--15119266	46	2.9	46	76	14	131	34	17	21	25	1.96
15119021--15119294	146	1.9	149	81	4	340	34	16	23	25	1.95
15137958--15137993	18	2.0	18	89	10	56	47	13	11	27	1.77
15138133--15138205	34	2.1	34	87	0	101	27	20	1	50	1.56
15139521--15139602	33	2.5	34	86	4	105	6	6	20	67	1.35
15139543--15139634	33	2.8	32	81	4	96	5	5	22	66	1.34
15139617--15139677	9	6.9	9	76	10	54	4	1	21	72	1.13
15139625--15139676	12	4.4	12	79	13	63	3	1	23	71	1.13
15144015--15144045	16	1.9	16	93	0	53	61	0	16	22	1.34
15144930--15145019	37	2.4	37	83	0	108	26	20	26	26	1.99
15149984--15150022	18	2.2	18	86	9	53	0	23	5	71	1.05
15150612--15150655	18	2.5	17	82	7	52	59	13	9	18	1.60
15169821--15169992	20	8.6	19	75	14	116	41	4	15	38	1.66
15169821--15169992	40	4.3	39	76	10	134	41	4	15	38	1.66
15169822--15169992	80	2.1	80	77	10	170	40	4	15	39	1.67
15171502--15171592	27	3.4	27	81	6	96	42	7	26	23	1.80
15172697--15172809	20	5.7	20	70	12	79	38	6	17	38	1.75
15172814--15172929	41	2.9	40	77	11	121	39	4	15	40	1.67
15173013--15173126	40	2.8	40	86	0	165	33	2	18	45	1.63
15172946--15173116	20	8.6	20	71	5	96	38	3	16	41	1.66
15173416--15173491	40	1.9	40	91	0	125	39	2	13	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15173416--15173491	20	3.8	20	76	0	71	39	2	13	44	1.57
15177136--15177171	11	3.3	11	96	0	63	19	11	36	33	1.87
15177337--15177375	19	2.2	19	90	9	64	35	5	2	56	1.35
15177884--15178270	49	7.9	49	74	6	345	17	24	18	39	1.92
15177866--15178264	98	4.1	98	88	1	575	17	24	19	39	1.92
15178724--15178760	18	2.1	18	89	0	56	56	10	13	18	1.66
15181503--15181547	6	7.5	6	89	0	63	46	0	31	22	1.52
15192591--15192622	16	2.0	16	93	0	55	15	6	37	40	1.73
15196350--15196390	15	2.7	15	92	0	73	36	7	36	19	1.80
15196199--15196516	169	1.9	168	94	0	555	38	20	20	20	1.93
15200806--15200843	14	2.7	14	84	11	51	13	15	2	68	1.32
15203177--15203215	17	2.2	18	90	4	62	15	17	12	53	1.72
15203814--15203846	15	2.2	15	89	10	50	78	0	21	0	0.75
15208594--15208623	15	1.9	16	93	6	53	80	3	3	13	0.97
15215137--15215162	3	8.7	3	100	0	52	69	0	0	30	0.89
15219169--15219443	23	12.0	23	83	0	309	45	14	4	35	1.65
15222866--15223420	137	4.0	138	92	0	891	41	7	5	45	1.55
15231089--15231142	21	2.6	21	84	0	63	35	24	11	29	1.90
15234567--15234943	188	2.0	188	97	0	720	46	17	12	22	1.82
15239578--15239631	27	2.0	27	85	7	74	22	35	18	24	1.96
15259338--15259372	15	2.2	16	90	5	54	17	8	2	71	1.23
15267817--15267850	4	8.2	4	87	6	50	47	0	2	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15267816--15267855	12	3.1	13	85	10	55	45	0	2	52	1.14
15272491--15272541	24	2.1	25	85	10	70	62	13	7	15	1.52
15280854--15280894	22	1.9	21	90	5	64	63	14	7	14	1.50
15293687--15293741	17	3.3	16	80	16	51	56	10	14	18	1.67
15294131--15294181	23	2.3	22	80	13	59	0	31	0	68	0.90
15294131--15294179	15	3.5	15	72	16	50	0	30	0	69	0.89
15306449--15306476	14	2.0	14	100	0	56	57	0	42	0	0.99
15313734--15313760	14	1.9	14	100	0	54	59	0	40	0	0.98
15313974--15314048	40	1.9	39	83	5	98	44	0	21	34	1.53
15317841--15317893	17	3.2	15	84	10	52	5	20	0	73	1.03
15329270--15329361	21	4.2	21	75	18	82	9	8	17	64	1.48
15329343--15329376	12	2.8	12	90	0	59	5	5	17	70	1.28
15329370--15329399	15	1.9	16	93	6	53	10	0	10	80	0.92
15329342--15329428	24	3.5	24	72	19	63	8	4	18	68	1.32
15329372--15329454	44	1.9	42	80	9	96	9	3	20	66	1.36
15329585--15329610	12	2.2	12	100	0	52	15	0	7	76	0.99
15340325--15340395	27	2.6	27	79	2	79	39	12	18	29	1.88
15340482--15340575	27	3.5	27	83	0	116	41	10	23	24	1.86
15344142--15344331	97	2.0	97	100	0	380	31	7	27	34	1.84
15355343--15355387	21	2.1	21	83	0	54	20	6	31	42	1.77
15358922--15358963	20	2.1	20	90	0	66	38	40	0	21	1.53
15366417--15366464	23	2.1	23	84	3	62	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15369039--15369073	2	18.5	2	88	11	56	0	51	0	48	1.00
15375221--15375674	10	48.4	9	66	20	79	60	5	1	32	1.30
15375238--15375276	16	2.4	17	87	12	55	69	0	2	28	1.02
15375594--15375660	29	2.4	28	85	12	84	62	4	1	31	1.24
15375221--15375674	9	48.6	9	66	20	79	60	5	1	32	1.30
15376281--15376307	11	2.5	11	100	0	54	14	0	14	70	1.17
15376228--15376340	10	10.9	10	71	17	52	30	1	7	59	1.36
15376358--15376415	29	2.0	30	83	10	75	27	0	5	67	1.12
15376379--15376419	19	2.2	19	86	8	57	21	0	4	73	1.02
15380585--15380653	35	2.0	35	88	0	102	40	14	15	28	1.87
15385072--15385112	21	1.9	22	95	5	75	41	36	0	21	1.54
15385568--15385648	39	2.1	39	92	0	135	35	17	12	34	1.87
15395832--15395924	44	2.1	44	84	7	118	37	0	20	41	1.52
15395832--15395924	22	4.2	22	80	2	98	37	0	20	41	1.52
15396182--15396271	28	3.1	29	70	6	83	38	2	18	40	1.63
15401910--15401965	18	2.9	19	82	17	71	67	0	0	32	0.91
15401938--15401993	25	2.2	25	84	15	71	73	0	0	26	0.84
15401909--15401987	18	4.3	17	78	15	70	69	0	0	30	0.89
15401911--15401991	22	3.9	20	75	15	76	69	0	0	30	0.89
15402089--15402133	23	2.0	22	86	4	63	44	0	24	31	1.54
15402219--15402306	32	2.8	31	81	5	88	27	23	22	26	2.00
15404880--15405034	59	2.6	61	87	7	214	34	2	27	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15404821--15405070	29	8.5	30	75	13	143	32	4	27	35	1.78
15405062--15405231	29	5.8	30	81	5	179	35	1	25	37	1.67
15406873--15407133	39	6.7	40	77	8	191	25	21	30	22	1.99
15406873--15407055	78	2.3	78	83	0	249	25	21	29	22	1.99
15406912--15407134	117	1.9	117	85	0	311	25	21	30	22	1.99
15407428--15407797	99	3.7	99	84	3	460	19	31	15	33	1.93
15407406--15407797	197	2.0	198	83	3	504	18	31	16	33	1.94
15407400--15407847	50	9.0	50	76	5	365	18	30	16	33	1.94
15414770--15415074	30	10.3	29	77	9	189	33	3	28	34	1.76
15414782--15415126	89	3.9	87	76	11	265	34	4	27	33	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125