genome.fa.s6.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  50  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15414760--15415074	59	5.3	57	80	11	228	33	4	27	34	1.76
15414878--15415126	30	8.4	29	78	8	143	34	3	25	35	1.74
15414878--15415126	59	4.2	58	80	10	240	34	3	25	35	1.74
15419896--15420065	24	7.1	24	85	0	223	33	15	25	24	1.95
15424859--15424998	36	3.9	36	81	3	156	22	17	18	40	1.91
15425594--15425670	20	4.4	18	71	26	60	49	1	0	49	1.09
15425600--15425642	22	2.1	19	87	12	59	44	2	0	53	1.13
15425619--15425667	17	3.2	17	72	27	63	46	0	0	53	1.00
15425603--15425686	29	2.9	29	89	1	134	50	1	0	48	1.08
15425706--15425811	12	8.8	12	78	11	92	69	18	2	8	1.26
15425839--15425879	17	2.3	18	87	8	57	70	19	4	4	1.24
15426240--15426302	18	3.3	18	72	12	54	30	3	65	1	1.18
15428222--15428453	112	2.1	112	89	1	349	33	12	24	30	1.92
15430786--15431180	52	7.6	52	91	1	596	26	13	23	36	1.92
15430784--15431180	207	1.9	208	90	0	625	27	13	23	36	1.92
15435373--15435721	43	8.1	43	86	3	470	28	29	17	24	1.97
15435795--15435827	15	2.2	15	94	0	57	48	27	0	24	1.51
15439661--15439725	28	2.5	26	80	11	78	63	1	10	24	1.36
15441437--15441749	50	6.3	50	81	1	313	25	25	14	33	1.94
15441437--15441749	100	3.1	99	84	3	385	25	25	14	33	1.94
15441760--15441913	50	3.1	50	78	3	166	25	24	14	35	1.94
15441672--15441832	82	2.0	82	91	0	259	23	27	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15441585--15441930	182	1.9	182	85	4	475	24	26	14	34	1.94
15441967--15443265	99	13.2	99	75	9	1019	26	20	16	35	1.94
15441936--15443229	296	4.4	294	77	8	1133	26	21	16	35	1.94
15441936--15443265	395	3.4	393	86	1	1734	26	20	16	35	1.94
15444082--15444158	7	11.0	7	81	13	88	0	15	0	84	0.62
15444077--15444165	39	2.2	40	88	9	146	0	19	0	80	0.70
15444082--15444156	1	75.0	1	70	0	51	0	14	0	85	0.60
15461478--15461502	2	12.5	2	100	0	50	48	0	0	52	1.00
15494428--15494504	36	2.2	36	90	2	120	28	28	10	32	1.90
15494574--15494618	19	2.2	20	80	11	56	24	31	22	22	1.99
15500637--15500671	15	2.3	15	90	0	52	57	0	5	37	1.23
15501328--15501373	23	2.0	23	91	0	74	32	32	23	10	1.90
15502453--15502544	30	2.9	31	81	15	93	46	0	2	51	1.13
15506170--15506201	13	2.5	13	100	0	64	21	0	0	78	0.76
15513401--15513516	61	1.9	61	89	1	180	26	11	0	61	1.36
15513759--15513800	20	2.3	19	88	12	61	26	0	4	69	1.08
15517471--15517517	18	2.6	18	90	6	69	29	0	2	68	1.02
15523841--15523936	42	2.3	43	78	5	115	52	2	8	37	1.44
15523926--15524022	40	2.3	41	81	10	99	55	2	6	36	1.36
15554970--15555199	74	3.1	74	96	0	415	24	24	22	27	2.00
15555742--15555853	51	2.2	49	82	3	125	34	13	21	30	1.92
15557226--15557272	24	2.0	24	83	8	60	61	25	4	8	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15557370--15557413	23	1.9	23	90	0	70	47	9	4	38	1.56
15560978--15561003	10	2.6	10	100	0	52	30	0	23	46	1.53
15561777--15561829	21	2.5	20	79	8	61	33	24	9	32	1.87
15565464--15565597	66	2.0	67	92	1	225	30	19	15	34	1.93
15566094--15566223	67	2.0	66	92	4	217	33	20	13	33	1.91
15569571--15569608	20	1.9	20	88	0	58	36	5	7	50	1.54
15575152--15575185	15	2.3	15	94	0	59	38	35	8	17	1.81
15575993--15576034	21	2.0	21	81	9	50	45	11	14	28	1.80
15579515--15579562	19	2.5	20	75	21	50	45	0	0	54	0.99
15579954--15579994	20	2.0	20	85	0	55	31	31	24	12	1.92
15580144--15580178	17	2.1	17	94	0	61	28	40	8	22	1.84
15587150--15587380	52	4.4	52	93	0	399	25	14	24	36	1.93
15602814--15603027	108	2.0	104	87	6	306	44	2	8	44	1.47
15602928--15603354	148	3.0	139	81	7	491	41	3	8	46	1.51
15603203--15603255	23	2.4	22	72	9	54	39	1	5	52	1.36
15604638--15604681	3	14.7	3	100	0	88	68	0	0	31	0.90
15613507--15613540	17	2.0	17	88	0	50	55	0	2	41	1.15
15613515--15613715	103	1.9	104	85	9	277	43	3	8	44	1.51
15613740--15613784	22	2.0	24	86	8	67	51	2	8	37	1.46
15613609--15614034	141	3.0	142	82	6	522	42	3	8	44	1.53
15613882--15613933	22	2.2	24	76	6	63	44	1	1	51	1.23
15615247--15615275	3	9.7	3	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15623857--15623908	15	3.0	18	84	15	58	57	9	28	3	1.48
15633264--15633455	59	3.3	58	82	11	232	35	2	28	33	1.71
15633356--15633588	30	7.9	28	70	19	136	38	1	22	37	1.65
15633264--15633456	58	3.3	58	84	8	225	35	2	27	34	1.71
15633415--15633589	60	3.0	58	84	7	219	39	1	21	37	1.63
15634176--15634219	22	2.0	22	86	8	63	6	52	18	22	1.69
15634309--15634350	22	1.9	23	85	9	61	19	11	2	66	1.34
15635429--15635478	18	2.9	16	85	8	55	56	6	0	38	1.24
15635469--15635517	18	2.7	18	78	9	55	48	4	6	40	1.47
15635445--15635499	24	2.3	24	80	0	65	50	5	1	41	1.36
15636410--15636643	92	2.5	92	85	1	308	31	15	17	35	1.92
15636621--15637056	38	11.5	38	65	18	165	32	19	14	33	1.91
15636575--15637281	76	9.4	76	88	3	973	32	19	14	33	1.92
15637500--15637668	51	3.4	50	78	10	175	13	25	21	39	1.90
15637501--15637921	101	4.2	97	80	7	348	14	25	20	38	1.92
15637677--15637841	50	3.3	50	75	12	167	14	25	20	40	1.90
15637701--15637847	51	2.9	50	77	11	174	14	25	18	41	1.89
15637651--15637933	101	2.8	101	84	3	349	14	24	20	39	1.90
15644705--15644898	59	3.3	59	85	7	245	35	3	28	32	1.73
15644796--15644937	30	4.8	29	68	15	85	37	1	25	35	1.65
15644767--15644868	30	3.4	30	70	18	95	35	1	28	34	1.69
15644851--15645031	30	6.1	30	81	7	201	37	2	22	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15652759--15652789	16	1.9	16	93	0	53	61	3	16	19	1.48
15662172--15662210	17	2.3	17	90	0	60	48	0	2	48	1.15
15662185--15662385	107	1.9	102	84	9	264	43	3	8	44	1.51
15662410--15662454	22	2.0	24	86	8	67	51	2	8	37	1.46
15662279--15662704	141	3.0	139	80	9	491	42	3	8	44	1.54
15662552--15662603	22	2.2	24	76	6	63	44	1	1	51	1.23
15666671--15666703	14	2.4	14	90	5	50	60	6	3	30	1.36
15670431--15670481	16	3.1	16	78	10	59	66	3	1	27	1.20
15670471--15670499	9	3.3	9	90	9	51	89	0	0	10	0.48
15670471--15670500	8	3.6	8	95	4	51	86	0	0	13	0.57
15670775--15670840	32	2.1	32	97	0	123	30	18	25	25	1.98
15671395--15671449	24	2.4	22	74	14	56	54	5	5	34	1.46
15676483--15676557	11	6.8	11	70	20	50	45	0	0	54	0.99
15678395--15678447	18	3.1	18	86	5	65	66	3	1	28	1.20
15679113--15679160	23	2.1	23	84	0	60	47	31	2	18	1.60
15688172--15688228	24	2.4	24	80	8	64	31	3	8	56	1.47
15692844--15692908	29	2.2	31	86	5	89	43	4	15	36	1.67
15692916--15692986	29	2.5	28	83	2	79	38	1	21	39	1.62
15692968--15693190	29	7.7	30	75	12	139	37	2	24	35	1.68
15693020--15693158	29	4.8	30	83	5	160	35	2	25	36	1.68
15693037--15693191	58	2.6	58	83	7	170	37	1	24	36	1.67
15700560--15700755	29	6.8	28	74	12	130	31	3	27	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15700618--15700824	87	2.4	88	82	5	233	35	3	26	34	1.75
15700618--15701011	29	13.5	29	74	13	156	36	3	24	35	1.72
15700618--15700981	58	6.2	59	76	11	225	35	3	25	35	1.73
15700618--15700981	30	12.4	29	78	10	208	35	3	25	35	1.73
15700725--15701010	29	9.8	30	79	8	205	38	3	24	33	1.73
15700963--15701020	29	1.9	30	89	6	91	46	3	17	32	1.65
15700758--15701024	30	9.1	28	77	9	96	40	2	23	32	1.70
15702124--15702192	30	2.2	30	84	10	84	55	0	2	42	1.15
15702143--15702191	10	4.9	10	80	9	64	53	0	0	46	1.00
15702137--15702191	20	2.8	19	83	8	65	52	0	1	45	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125