genome.fa.s6.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  41  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12556656--12557083	161	2.7	160	87	3	586	39	17	19	22	1.92
12558887--12558967	24	3.4	24	94	0	144	24	20	24	29	1.99
12564859--12564887	15	1.9	15	100	0	58	27	13	24	34	1.93
12573479--12573562	43	2.0	43	95	0	150	47	13	8	30	1.72
12573453--12573553	20	4.8	20	76	9	85	49	10	8	30	1.68
12578244--12578332	44	2.0	44	84	0	115	20	17	17	43	1.88
12578289--12578594	36	8.4	36	75	7	181	21	19	17	41	1.90
12578797--12578822	2	13.0	2	100	0	52	0	0	50	50	1.00
12584616--12584691	37	2.1	36	83	11	93	40	1	3	53	1.27
12584616--12584691	11	6.8	11	70	19	52	40	1	3	53	1.27
12584617--12584723	20	5.8	18	70	20	62	41	1	4	52	1.33
12584634--12584830	68	3.0	66	74	15	185	39	3	5	51	1.41
12585078--12585150	29	2.4	31	88	6	114	52	0	1	46	1.09
12585733--12585809	39	2.0	39	89	0	118	37	10	19	32	1.86
12586188--12586260	30	2.4	30	93	4	121	43	0	1	54	1.08
12586222--12586263	23	1.9	23	90	9	70	50	0	0	50	1.00
12587400--12587597	91	2.2	91	82	6	242	39	21	8	30	1.83
12587718--12587758	20	2.0	20	86	9	57	60	7	4	26	1.43
12587928--12588118	9	20.2	9	66	18	77	30	5	2	61	1.31
12587928--12588116	10	19.9	10	67	15	73	30	5	2	61	1.31
12587944--12588077	57	2.4	57	83	7	166	30	5	3	59	1.39
12588038--12588126	19	4.6	19	76	16	76	30	4	1	64	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12590035--12590069	18	1.9	18	88	0	52	51	5	34	8	1.56
12594746--12594821	37	2.1	36	85	11	102	40	1	2	55	1.22
12594746--12594821	12	6.8	11	72	19	52	40	1	2	55	1.22
12594892--12594926	12	3.1	12	84	16	56	51	0	0	48	1.00
12594883--12594926	22	2.0	22	91	8	72	50	0	2	47	1.13
12594888--12594942	21	2.5	22	82	5	67	47	0	7	45	1.30
12596836--12597022	45	4.2	45	76	9	156	41	12	18	26	1.87
12596878--12597067	90	2.1	89	81	6	215	41	14	17	26	1.88
12603269--12603300	13	2.5	13	94	0	55	50	0	0	50	1.00
12604234--12604310	30	2.5	30	79	10	84	55	1	0	42	1.07
12606039--12606077	18	2.2	18	85	0	51	56	0	0	43	0.99
12606814--12606909	44	2.2	44	98	0	183	20	10	31	37	1.87
12621929--12622051	24	5.1	23	83	5	138	26	21	24	28	1.99
12621929--12622051	48	2.6	48	96	0	219	26	21	24	28	1.99
12623846--12623888	22	1.9	23	85	4	61	48	6	6	37	1.57
12638686--12638741	25	2.2	25	82	17	64	71	5	12	10	1.29
12652500--12652530	16	1.9	16	93	0	53	22	16	0	61	1.34
12658657--12658755	46	2.2	46	96	0	180	37	17	22	23	1.94
12663251--12663277	7	3.9	7	100	0	54	11	29	0	59	1.32
12663873--12664120	124	2.0	124	98	0	478	33	19	23	23	1.97
12664716--12664763	22	2.2	22	85	3	62	27	16	33	22	1.96
12679177--12679266	37	2.4	37	84	1	117	32	23	14	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12679252--12679302	26	2.0	26	96	0	93	33	21	15	29	1.94
12692503--12692572	12	5.3	12	75	23	61	0	30	0	70	0.88
12692514--12692579	5	13.6	5	81	15	52	0	33	0	66	0.92
12692517--12692579	24	2.6	24	97	2	117	0	33	0	66	0.92
12692517--12692574	12	4.8	12	84	16	84	0	32	0	67	0.91
12703267--12703297	2	15.5	2	100	0	62	51	0	0	48	1.00
12709076--12709103	14	2.0	14	100	0	56	28	21	7	42	1.79
12716929--12716958	15	2.0	15	93	0	51	66	3	30	0	1.07
12717262--12717308	24	2.0	24	82	0	58	61	8	25	4	1.43
12718036--12718086	12	4.5	11	81	13	59	80	1	15	1	0.89
12723547--12723599	21	2.5	21	84	6	63	35	26	9	28	1.87
12729400--12729435	14	2.6	14	95	0	63	38	5	25	30	1.78
12734924--12734986	27	2.4	25	72	10	63	47	3	11	38	1.55
12755275--12755314	12	3.4	12	82	6	55	47	2	2	47	1.29
12778923--12778971	18	2.5	20	78	12	57	67	4	8	20	1.34
12784711--12784840	50	2.6	49	81	3	161	36	19	24	19	1.94
12794823--12794861	17	2.3	17	86	8	53	17	12	23	46	1.83
12797405--12797468	31	2.1	31	81	0	74	26	18	12	42	1.86
12806137--12806190	22	2.5	22	85	8	67	16	14	0	68	1.21
12814859--12814888	12	2.5	12	94	0	51	30	0	3	66	1.07
12817316--12817475	80	2.0	80	95	0	284	26	14	17	41	1.88
12828310--12828343	17	1.9	17	88	5	50	38	17	11	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12837234--12837301	27	2.5	26	77	11	66	20	2	1	75	1.02
12837260--12837289	13	2.4	13	94	5	53	26	3	0	70	1.03
12837260--12837301	13	3.2	13	83	9	50	23	2	0	73	0.94
12840216--12840260	20	2.3	19	81	11	54	71	4	13	11	1.29
12840208--12840271	21	3.2	20	76	12	60	75	3	14	7	1.15
12841334--12841379	25	1.9	24	86	8	67	32	6	6	54	1.52
12853052--12853109	27	2.1	27	100	0	116	17	17	39	25	1.91
12858905--12858945	20	2.0	20	100	0	82	29	14	14	41	1.86
12861663--12861708	23	2.0	24	87	12	69	39	6	21	32	1.79
12862508--12862674	57	2.9	57	83	2	212	49	11	14	23	1.77
12867672--12867737	32	2.1	32	85	5	89	42	12	22	22	1.87
12877903--12877929	9	3.0	9	100	0	54	33	11	11	44	1.75
12877895--12877943	18	2.7	19	69	30	52	32	12	14	40	1.83
12878131--12878185	21	2.5	22	82	2	67	54	16	12	16	1.71
12878139--12878185	22	2.2	21	84	3	58	55	17	10	17	1.69
12878436--12878464	14	2.1	14	100	0	58	58	20	13	6	1.58
12878997--12879086	44	2.0	44	100	0	180	37	17	4	40	1.70
12887944--12888079	15	9.1	15	72	12	91	24	21	27	26	1.99
12887959--12888073	30	3.8	30	83	0	149	26	21	26	25	2.00
12887950--12888086	60	2.3	60	93	0	229	25	21	27	25	2.00
12890236--12890291	28	2.0	28	96	0	103	35	5	7	51	1.52
12893232--12893270	17	2.3	17	86	8	53	17	12	23	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12893260--12893355	41	2.3	41	94	0	165	29	5	28	37	1.79
12893391--12893446	28	2.0	28	92	0	94	35	7	7	50	1.57
12898938--12899100	29	5.5	28	73	16	125	31	5	29	33	1.80
12898945--12899100	59	2.6	60	85	4	217	33	5	28	33	1.79
12899931--12899964	17	2.0	17	88	0	50	14	2	8	73	1.19
12900140--12900181	15	2.8	15	92	0	66	42	0	0	57	0.99
12900880--12900966	6	15.2	6	69	17	51	51	3	0	44	1.18
12900891--12900966	17	4.5	17	83	0	98	52	3	0	43	1.19
12901301--12901813	201	2.6	201	90	1	796	23	23	17	34	1.96
12914041--12914849	59	13.7	59	86	3	1069	34	5	25	34	1.80
12914028--12914849	177	4.7	177	91	2	1237	33	6	26	33	1.81
12916721--12916796	17	4.5	17	83	0	98	52	3	0	43	1.19
12917973--12918017	23	1.9	23	86	13	65	42	6	17	33	1.76
12926457--12926520	31	2.1	31	81	0	74	26	18	12	42	1.86
12933401--12933468	29	2.3	30	77	10	77	38	25	11	25	1.89
12936058--12936093	17	2.0	19	89	10	58	22	11	5	61	1.50
12936077--12936141	31	2.1	31	81	13	73	20	10	6	63	1.48
12936181--12936249	15	4.5	15	78	5	66	17	2	4	75	1.09
12936195--12936248	4	13.8	4	76	18	51	18	1	3	75	1.03
12936195--12936248	21	2.5	21	85	8	65	18	1	3	75	1.03
12936217--12936260	21	2.1	21	83	8	54	18	4	4	72	1.19
12940062--12940094	14	2.3	15	89	5	50	81	3	15	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12941386--12941724	100	3.4	99	82	5	344	37	17	17	27	1.92
12941355--12941755	100	4.0	99	76	7	339	37	17	17	26	1.92
12941475--12941790	50	6.3	50	67	10	171	36	17	19	26	1.94
12941711--12942047	100	3.4	100	76	7	317	35	18	18	27	1.94
12941645--12941934	50	5.8	50	72	8	151	36	18	17	26	1.94
12941386--12942067	349	2.0	349	80	4	777	36	17	18	27	1.93
12943786--12943855	31	2.3	31	79	13	74	21	18	2	57	1.54
12948661--12948748	29	3.0	29	88	0	122	21	5	32	39	1.77
12957055--12957111	24	2.4	25	77	14	66	10	12	3	73	1.21
12961452--12961500	20	2.5	20	80	16	57	77	2	4	16	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125