genome.fa.s6.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  44  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13597647--13597980	40	8.4	40	86	2	435	22	17	26	32	1.96
13609212--13609265	28	1.9	28	84	0	72	29	12	31	25	1.93
13614657--13614697	2	21.0	2	95	5	75	48	0	0	51	1.00
13615443--13615498	29	1.9	29	85	0	76	42	7	10	39	1.67
13623514--13623555	18	2.4	17	84	4	57	45	7	14	33	1.72
13623933--13623978	13	3.5	15	83	16	50	43	17	0	39	1.49
13623944--13623991	13	3.7	13	83	13	55	41	16	2	39	1.60
13623934--13623994	26	2.3	27	80	8	72	45	18	1	34	1.59
13624025--13624149	58	2.2	58	88	2	180	42	13	7	36	1.72
13628779--13629031	125	2.0	125	95	1	454	29	16	18	35	1.93
13630357--13630392	18	2.0	18	94	0	63	16	19	11	52	1.73
13638074--13638223	50	2.9	52	80	9	175	52	10	3	34	1.52
13639453--13639609	37	4.2	37	89	0	242	33	33	21	12	1.90
13644691--13644944	37	6.8	37	87	0	328	32	31	21	14	1.93
13644728--13644828	16	5.7	16	67	21	58	30	31	21	15	1.95
13646440--13646493	15	3.5	15	92	5	81	61	9	5	24	1.48
13646440--13646505	15	4.1	17	88	3	59	59	7	6	27	1.49
13648737--13648928	53	3.6	53	86	4	264	27	15	22	34	1.94
13649865--13649908	21	2.1	21	86	0	61	31	20	15	31	1.94
13661402--13661453	27	1.9	27	84	7	70	42	17	7	32	1.77
13661594--13662037	166	2.7	166	82	7	540	46	12	10	31	1.75
13661532--13662037	82	6.1	84	82	7	502	46	12	10	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13662277--13662438	50	3.2	50	77	8	123	53	9	4	32	1.54
13662828--13662878	17	3.1	17	72	11	52	56	9	7	25	1.58
13673631--13673682	3	17.0	3	80	4	50	55	0	7	36	1.29
13674131--13674388	42	6.1	42	88	1	365	38	22	17	21	1.93
13675224--13675271	20	2.5	20	96	3	89	25	8	35	31	1.85
13683604--13683632	10	2.9	10	100	0	58	79	0	20	0	0.74
13683797--13683876	17	4.6	17	76	6	63	23	16	8	51	1.72
13684427--13684456	14	2.1	15	93	6	53	90	0	3	6	0.56
13685799--13685829	16	1.9	16	93	0	53	22	12	3	61	1.46
13700772--13700882	55	2.0	55	98	0	213	40	11	18	29	1.86
13704272--13704299	13	2.2	13	100	0	56	35	0	14	50	1.43
13705487--13705554	14	5.2	13	71	16	59	20	2	1	75	1.02
13705516--13705550	13	2.8	12	87	8	52	25	2	0	71	1.00
13708336--13708361	13	2.0	13	100	0	52	38	23	7	30	1.83
13711290--13711341	12	4.2	12	77	18	52	1	36	0	61	1.07
13718467--13718515	20	2.5	19	87	6	71	77	0	16	6	0.96
13718439--13718517	33	2.5	31	80	15	90	75	1	17	5	1.04
13719446--13719473	13	2.2	13	100	0	56	35	0	14	50	1.43
13727523--13727560	21	2.0	20	85	15	53	57	2	10	28	1.45
13727972--13728014	12	3.5	13	84	12	54	60	2	37	0	1.10
13728429--13728498	34	2.1	34	86	0	95	20	20	11	48	1.79
13728967--13728997	15	2.1	15	100	0	62	32	29	0	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13741529--13741571	12	3.5	13	84	12	54	60	0	37	2	1.10
13752659--13752685	9	3.0	9	100	0	54	66	0	11	22	1.22
13755232--13755277	21	2.1	22	84	11	60	0	32	0	67	0.91
13759008--13759042	3	11.7	3	87	0	52	2	0	28	68	1.04
13759009--13759042	12	2.8	12	95	0	59	2	0	26	70	1.01
13760302--13760351	23	2.2	22	82	3	55	42	4	0	54	1.19
13761405--13761511	43	2.5	43	96	1	196	39	23	14	22	1.91
13762631--13762723	42	2.2	42	100	0	186	49	11	27	10	1.73
13764511--13764545	18	2.0	18	88	5	54	34	22	22	20	1.97
13765957--13765992	18	2.0	18	100	0	72	38	11	16	33	1.84
13770818--13770893	29	2.6	30	85	6	102	26	36	14	22	1.92
13776018--13776050	16	2.0	17	88	5	50	57	12	6	24	1.57
13786462--13786515	22	2.5	22	100	0	108	18	31	31	18	1.95
13787568--13787630	21	3.0	21	86	9	92	33	7	19	39	1.80
13787968--13788031	33	1.9	34	84	9	87	39	18	3	39	1.67
13790690--13790731	21	2.0	21	95	0	75	33	11	19	35	1.88
13794020--13794069	25	2.0	25	100	0	100	20	4	32	44	1.70
13802628--13802704	21	3.7	20	74	6	64	31	24	14	29	1.94
13803437--13803675	52	4.6	52	88	0	325	36	23	13	25	1.92
13804502--13804535	15	2.2	15	89	5	50	44	14	0	41	1.45
13813197--13813241	18	2.4	19	81	7	56	24	0	6	68	1.13
13814954--13814991	17	2.2	18	85	4	51	68	2	2	26	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13828778--13828819	18	2.3	18	80	12	50	40	9	19	30	1.83
13829168--13829223	29	2.0	28	83	10	71	26	7	25	41	1.81
13829192--13829298	48	2.2	47	82	12	128	28	9	25	37	1.87
13829472--13829519	17	2.8	17	75	9	53	27	2	25	45	1.64
13830555--13830600	21	2.1	23	88	8	69	23	30	2	43	1.66
13832944--13833048	52	2.0	52	98	0	201	40	24	9	25	1.85
13832957--13833040	25	3.3	25	67	23	75	42	21	9	26	1.83
13844903--13844927	7	3.6	7	100	0	50	24	44	0	32	1.54
13844956--13845016	20	3.0	20	90	0	86	22	29	13	34	1.92
13845421--13845503	40	2.1	39	86	2	112	20	3	9	66	1.36
13845476--13845501	12	2.2	12	100	0	52	23	0	7	69	1.14
13846072--13846550	117	4.1	115	81	8	486	24	17	16	41	1.89
13846147--13846575	60	7.2	59	73	11	310	26	17	14	40	1.89
13847420--13847483	17	3.9	17	72	27	59	62	6	4	26	1.39
13847410--13847498	30	3.0	30	90	3	126	62	5	5	25	1.39
13848864--13849608	61	12.6	60	78	10	623	38	15	18	26	1.91
13848872--13849604	294	2.5	296	81	10	872	38	16	18	27	1.91
13848864--13849608	116	6.3	117	76	11	435	38	15	18	26	1.91
13849408--13849604	59	3.5	54	74	14	182	39	16	21	23	1.92
13850128--13850177	21	2.4	21	83	6	57	38	34	8	20	1.82
13850405--13850438	18	1.9	17	94	5	59	41	0	0	58	0.98
13851147--13851202	28	2.0	28	100	0	112	53	17	14	14	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13851543--13851602	28	2.1	28	84	9	77	68	5	0	26	1.10
13853961--13853995	1	35.0	1	88	0	52	2	2	94	0	0.37
13859174--13859294	63	1.9	63	94	0	215	51	19	8	20	1.72
13868380--13868411	16	1.9	17	93	6	57	43	6	0	50	1.27
13870354--13870403	23	2.3	21	83	13	57	60	6	4	30	1.39
13874291--13874329	6	6.5	6	87	0	51	46	0	30	23	1.53
13874429--13874535	37	2.8	38	74	5	90	22	15	27	34	1.95
13875299--13875327	14	2.1	14	100	0	58	41	0	13	44	1.44
13885871--13885902	12	2.6	12	95	5	55	81	3	15	0	0.82
13885890--13885935	21	2.4	19	80	20	51	65	4	19	10	1.41
13885893--13885933	21	2.0	21	90	0	64	63	4	19	12	1.46
13891313--13891408	46	2.1	46	92	0	156	27	8	23	40	1.83
13893620--13893666	24	2.0	24	83	8	60	44	0	42	12	1.42
13894737--13894792	21	2.7	21	72	5	51	32	21	12	33	1.91
13895414--13895598	42	4.4	42	87	4	223	24	27	11	36	1.90
13902565--13902668	42	2.5	42	86	7	133	24	26	10	38	1.88
13902565--13902706	42	3.4	41	81	6	128	26	28	10	34	1.90
13908117--13908176	21	2.9	21	87	0	84	33	25	15	26	1.95
13908919--13909037	52	2.3	52	94	0	211	35	26	14	23	1.93
13909020--13909053	16	2.1	16	94	0	59	41	26	8	23	1.83
13910438--13910483	9	5.1	9	89	0	74	26	10	23	39	1.88
13910438--13910483	18	2.6	18	100	0	92	26	10	23	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13911392--13911503	29	3.9	28	80	8	111	24	21	22	32	1.98
13914389--13914426	18	2.2	18	85	4	51	39	0	18	42	1.50
13914986--13915127	24	5.9	24	83	0	167	38	14	27	20	1.91
13916912--13917023	42	2.6	42	87	4	145	26	24	9	39	1.86
13916882--13917102	42	5.2	40	74	13	142	25	25	10	38	1.88
13919463--13919517	27	2.0	27	96	0	101	34	10	29	25	1.90
13923716--13923788	8	9.2	8	73	16	55	64	4	1	30	1.20
13924038--13924078	19	2.2	19	86	0	55	65	2	17	14	1.37
13939245--13939292	24	2.0	24	91	0	78	52	8	8	31	1.61
13939394--13939465	24	3.0	24	83	2	90	13	23	19	43	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125