genome.fa.s6.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  57  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17476459--17476537	9	10.3	9	65	32	51	46	0	0	53	1.00
17476459--17476508	16	3.3	16	72	16	61	42	0	0	58	0.98
17476459--17476532	30	2.5	30	97	2	141	45	0	0	54	1.00
17476493--17476535	22	2.0	22	90	4	70	51	0	0	48	1.00
17477335--17477360	7	3.7	7	100	0	52	57	0	42	0	0.98
17477458--17477504	15	3.2	15	75	6	51	36	2	2	59	1.21
17480355--17480386	13	2.4	14	94	5	57	28	9	34	28	1.88
17485009--17485155	29	5.1	28	79	8	91	30	3	28	37	1.74
17485009--17485068	28	2.1	27	85	11	77	26	8	30	35	1.86
17485049--17485318	29	9.2	29	76	7	224	35	2	25	36	1.70
17485021--17485314	58	5.0	59	82	6	307	34	3	25	36	1.73
17485056--17485290	117	2.0	118	85	7	325	35	2	24	37	1.69
17487224--17487287	6	11.7	6	68	18	50	51	3	1	43	1.26
17487227--17487287	17	3.6	17	82	2	70	54	3	1	40	1.27
17487573--17487984	92	4.5	92	95	0	734	33	19	14	32	1.92
17487680--17487921	40	5.5	40	67	24	139	35	19	14	30	1.91
17487816--17487974	52	3.3	52	70	23	173	32	18	16	32	1.94
17488037--17488162	50	2.5	49	82	6	137	11	29	20	38	1.87
17488074--17488170	49	2.0	50	89	2	151	12	27	20	39	1.89
17495310--17495403	29	3.3	29	77	15	81	30	7	26	35	1.84
17495407--17495470	32	2.1	32	91	5	105	42	6	23	28	1.78
17495407--17495470	30	2.1	29	88	8	92	42	6	23	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17497402--17497504	6	18.0	6	67	16	67	52	1	3	41	1.31
17497402--17497500	43	2.3	45	76	16	109	51	2	4	42	1.32
17497424--17497476	20	2.8	19	86	8	74	56	1	3	37	1.28
17497442--17497504	24	2.6	26	82	14	89	55	0	4	39	1.21
17498037--17498285	128	2.0	127	86	4	349	34	11	8	46	1.70
17502134--17502178	18	2.5	19	78	10	58	51	0	0	48	1.00
17502511--17502583	36	2.0	36	100	0	146	50	5	16	27	1.67
17513841--17514276	217	2.0	217	100	0	872	32	18	18	30	1.95
17522886--17522921	12	3.0	12	91	0	54	50	33	8	8	1.63
17525346--17525435	10	9.6	10	73	13	59	64	2	2	31	1.18
17525345--17525435	36	2.4	38	80	10	98	64	2	2	30	1.17
17525344--17525403	29	2.1	29	81	12	70	65	3	0	31	1.09
17525411--17525456	21	2.2	21	84	7	58	65	2	2	30	1.16
17525423--17525473	19	2.6	19	81	3	66	60	3	5	29	1.38
17525640--17525700	19	3.0	20	75	22	56	31	6	3	59	1.39
17525682--17525783	29	3.4	28	76	14	89	30	7	1	59	1.37
17525899--17526105	95	2.3	87	79	11	222	37	11	15	36	1.83
17526318--17526366	2	25.0	2	91	4	82	51	0	0	48	1.00
17529029--17529053	13	1.9	13	100	0	50	72	0	0	28	0.86
17530482--17530515	14	2.3	15	85	5	52	32	5	5	55	1.48
17531506--17531560	27	2.0	27	89	0	83	40	0	5	54	1.23
17531524--17531623	6	16.8	6	75	13	82	47	2	1	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17531524--17531597	17	4.6	17	85	11	93	40	1	1	56	1.16
17531514--17531591	11	7.9	10	71	25	51	39	1	2	56	1.21
17532390--17532437	3	15.3	3	91	8	78	66	2	0	31	1.03
17533256--17533604	162	2.1	166	88	5	526	25	17	12	44	1.84
17533498--17533526	10	2.9	10	100	0	58	20	0	6	72	1.07
17533677--17534038	29	12.5	30	70	24	237	32	27	3	37	1.72
17533676--17534038	59	6.3	59	89	2	549	32	27	3	36	1.72
17546222--17546755	37	15.7	31	67	17	235	34	15	19	29	1.93
17546185--17547164	68	13.9	68	88	6	1352	35	15	19	30	1.93
17547496--17547554	27	2.2	27	81	0	73	38	0	6	54	1.27
17547517--17547647	6	21.8	6	74	14	101	45	2	1	51	1.23
17547507--17547615	11	10.9	10	70	26	63	39	1	2	55	1.25
17547517--17547621	17	6.7	15	82	13	115	40	1	1	56	1.21
17547507--17547622	31	3.9	31	92	4	159	40	1	2	55	1.24
17548414--17548468	3	17.3	3	85	10	74	65	1	0	32	1.03
17548414--17548468	10	5.8	9	85	10	74	65	1	0	32	1.03
17548414--17548468	13	4.3	12	86	9	74	65	1	0	32	1.03
17549527--17549889	29	12.5	30	72	22	278	31	29	3	35	1.74
17549524--17549894	59	6.4	59	90	2	572	31	30	3	34	1.75
17561745--17562449	95	7.4	95	86	1	930	30	16	28	24	1.96
17561645--17562638	190	5.2	185	78	6	818	32	16	26	24	1.96
17562315--17562697	189	2.0	189	83	2	473	33	17	25	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17564539--17564583	5	8.8	5	81	13	56	22	0	2	75	0.91
17564542--17564582	21	1.9	22	95	5	75	24	0	2	73	0.96
17564706--17564732	14	1.9	14	100	0	54	48	0	0	51	1.00
17565652--17565686	6	5.8	6	93	0	61	0	54	0	45	0.99
17566454--17566488	11	2.8	13	83	16	56	54	0	0	45	0.99
17569075--17569130	20	2.8	20	80	2	67	26	8	26	37	1.86
17572491--17572569	28	2.8	28	79	9	88	32	26	11	29	1.91
17572509--17572544	14	2.6	14	86	0	54	30	25	11	33	1.90
17572416--17572698	110	2.5	112	87	4	392	39	27	8	24	1.85
17572599--17572804	7	28.7	7	71	8	92	38	25	7	28	1.83
17572839--17572874	14	2.6	14	86	0	54	30	25	13	30	1.94
17573931--17574060	28	4.7	28	81	6	142	36	26	14	22	1.93
17581940--17582017	27	2.7	30	76	15	83	38	46	8	6	1.61
17581832--17582191	174	2.1	174	99	0	711	33	41	14	10	1.79
17582116--17582212	30	3.3	30	76	16	105	39	46	9	5	1.58
17582123--17582217	27	3.4	27	76	13	102	36	46	10	6	1.64
17587782--17589494	570	3.0	570	99	0	3372	25	21	19	33	1.97
17589901--17590048	74	2.0	74	89	2	226	47	16	11	23	1.79
17593940--17594056	59	2.0	59	93	0	198	41	14	24	19	1.89
17598372--17598428	28	2.0	28	100	0	114	29	24	21	24	1.99
17599571--17599605	17	2.1	16	89	5	52	80	2	0	17	0.84
17600767--17600823	24	2.4	24	90	0	87	28	1	33	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17601562--17601763	40	5.1	39	82	2	224	23	23	20	32	1.98
17601571--17601763	80	2.4	80	86	0	260	24	22	20	32	1.98
17604968--17605000	3	11.0	3	100	0	66	66	0	0	33	0.92
17612426--17612464	15	2.6	15	87	0	51	58	0	2	38	1.12
17613046--17613128	11	7.4	11	77	9	87	45	1	1	51	1.16
17613045--17613126	6	14.3	6	77	18	86	43	1	1	53	1.16
17613044--17613140	17	5.7	17	85	8	117	45	2	1	51	1.19
17613045--17613128	23	3.7	23	76	10	75	45	1	1	52	1.16
17615080--17615264	29	6.3	29	76	8	137	34	27	4	34	1.77
17615102--17615264	58	2.8	58	79	7	188	35	26	4	33	1.76
17615127--17615346	87	2.5	86	75	13	209	31	25	6	36	1.81
17615247--17615469	29	7.6	29	68	11	123	32	25	6	35	1.81
17615217--17615457	58	4.1	57	78	7	171	33	24	6	35	1.81
17615247--17615398	58	2.6	58	88	3	205	32	23	7	37	1.82
17627165--17627988	92	9.0	92	94	0	1416	32	15	19	32	1.93
17628244--17628290	17	2.7	17	93	3	76	46	0	2	51	1.13
17630213--17630477	29	9.0	29	82	5	201	38	23	3	34	1.73
17630213--17630476	59	4.5	58	78	7	221	38	23	3	34	1.72
17630253--17630474	88	2.5	88	83	7	274	40	22	2	34	1.68
17630424--17630559	58	2.3	58	80	0	146	30	22	9	37	1.86
17630631--17630686	29	1.9	29	85	0	76	26	32	12	28	1.93
17643314--17643359	21	2.2	21	85	14	60	13	10	2	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17645664--17645703	18	2.3	18	86	4	55	17	15	12	55	1.70
17649076--17649115	12	3.3	12	89	10	64	0	15	7	77	0.98
17656097--17656138	21	2.0	21	85	0	57	28	7	19	45	1.76
17656169--17656204	18	1.9	19	88	5	56	38	2	22	36	1.69
17656280--17656329	19	2.6	18	81	12	55	40	10	8	42	1.68
17656482--17656541	30	2.0	30	83	6	77	31	21	5	41	1.75
17666316--17666522	26	8.0	26	78	8	190	23	26	18	31	1.97
17666302--17666544	78	3.1	78	77	8	242	24	25	17	32	1.97
17671558--17671589	16	2.0	16	93	0	55	25	18	3	53	1.59
17672071--17672125	19	3.1	19	72	22	64	25	20	7	47	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125