genome.fa.s6.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  35  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10142297--10142322	7	3.7	7	100	0	52	30	0	53	15	1.42
10166326--10166393	31	2.2	31	86	0	100	32	8	11	47	1.71
10166684--10166765	2	41.0	2	75	9	69	45	8	1	45	1.42
10171001--10171099	30	3.3	30	63	20	80	37	18	27	17	1.93
10171134--10171236	15	6.9	15	75	4	100	27	25	24	23	2.00
10171000--10171130	60	2.2	60	100	0	262	34	19	29	17	1.94
10171122--10171236	30	3.8	30	80	0	113	26	25	26	22	2.00
10172658--10172688	3	10.3	3	100	0	62	67	0	32	0	0.91
10177483--10177607	15	8.3	15	70	3	81	26	23	25	24	2.00
10177493--10177598	30	3.5	30	83	2	115	29	24	23	22	1.99
10177517--10177607	45	2.0	45	80	4	103	26	23	25	25	2.00
10181393--10181636	51	4.8	51	88	2	364	29	22	13	33	1.93
10181348--10181636	102	2.8	102	85	4	368	29	23	14	32	1.94
10187040--10187346	149	2.1	148	90	1	488	23	28	28	19	1.98
10187953--10188146	26	7.7	26	64	9	96	19	25	18	36	1.94
10187953--10188151	50	4.0	50	79	2	229	20	26	18	35	1.95
10187966--10188151	100	1.9	100	86	0	264	20	25	17	35	1.95
10190419--10190822	53	7.6	53	86	3	537	28	16	21	32	1.95
10190419--10190822	158	2.5	159	90	1	623	28	16	21	32	1.95
10196124--10196304	33	5.4	32	72	13	123	32	13	23	30	1.93
10196083--10196273	102	1.9	102	91	0	310	30	14	24	30	1.95
10196083--10196307	102	2.2	102	86	0	306	31	14	24	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10199972--10200038	21	3.3	21	75	8	84	32	28	7	31	1.85
10199957--10200052	40	2.4	40	98	0	183	30	21	8	39	1.83
10199957--10200052	21	4.8	19	70	9	75	30	21	8	39	1.83
10200075--10200112	20	1.9	20	88	0	58	28	13	15	42	1.85
10200680--10201518	98	8.6	98	83	6	946	36	20	19	24	1.95
10200720--10200874	48	3.2	48	65	10	116	36	21	19	23	1.95
10200685--10201518	97	8.6	97	84	6	1001	36	20	18	24	1.95
10201977--10202010	14	2.2	16	90	10	54	44	41	5	8	1.60
10214436--10214474	15	2.5	15	83	4	51	66	5	7	20	1.36
10216631--10216699	21	3.3	20	80	8	66	14	30	23	31	1.94
10217903--10218015	40	2.8	40	79	0	145	39	30	16	12	1.86
10225690--10225730	14	2.7	15	80	20	50	4	19	0	75	0.98
10228282--10228331	24	2.1	24	100	0	100	38	4	24	34	1.74
10233919--10233958	21	1.9	21	84	0	53	15	25	22	37	1.93
10235180--10235289	40	2.8	40	83	2	132	38	24	20	17	1.93
10240182--10240375	70	2.8	70	92	0	307	34	9	19	36	1.85
10244900--10244927	13	2.2	13	100	0	56	21	42	28	7	1.79
10250351--10250399	19	2.5	19	86	3	62	48	0	6	44	1.27
10250354--10250409	21	2.8	20	84	7	69	46	0	7	46	1.30
10250220--10250658	137	3.1	138	79	13	462	43	5	7	43	1.57
10254567--10254820	25	10.2	25	81	2	235	33	23	17	25	1.96
10258846--10259095	26	9.6	26	86	1	247	27	20	21	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10258846--10259095	78	3.2	78	86	1	331	27	20	21	31	1.97
10258846--10259095	52	4.8	52	85	0	302	27	20	21	31	1.97
10262170--10262221	3	17.0	3	84	4	50	36	7	0	55	1.29
10262423--10262453	3	10.3	3	92	0	53	70	29	0	0	0.87
10262657--10262969	148	2.1	147	87	4	452	44	4	9	41	1.55
10262848--10262899	21	2.3	23	71	15	56	40	3	7	48	1.50
10263525--10263571	17	2.7	17	83	9	51	19	10	2	68	1.30
10265621--10265736	20	5.8	19	77	17	103	58	6	0	35	1.23
10265620--10265754	19	6.7	21	74	13	97	60	5	0	34	1.25
10265700--10265752	21	2.6	19	80	11	52	62	1	1	33	1.17
10276872--10276922	25	2.0	25	100	0	102	56	11	7	23	1.61
10277688--10277737	24	2.1	24	88	7	75	4	24	8	64	1.38
10277994--10278034	21	2.0	22	90	9	68	0	31	0	68	0.90
10287687--10287713	10	2.7	10	100	0	54	7	22	7	62	1.46
10293102--10293248	73	2.0	73	90	0	231	35	9	25	29	1.88
10297009--10297075	20	3.2	21	72	16	59	10	25	14	49	1.76
10301315--10301358	17	2.5	17	85	10	54	25	2	2	70	1.10
10301316--10301358	18	2.4	19	81	18	56	25	2	2	69	1.12
10303073--10303534	239	1.9	237	90	2	739	40	14	7	36	1.75
10304601--10305263	152	4.4	148	84	9	816	42	11	3	43	1.55
10305681--10305731	3	17.0	3	95	0	93	64	0	0	35	0.94
10306120--10306768	42	15.5	42	86	0	886	35	23	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10307156--10307202	10	4.6	10	83	2	58	2	10	4	82	0.88
10314202--10314238	18	2.0	19	89	5	58	59	13	5	21	1.54
10316911--10317571	148	4.4	149	86	4	881	43	9	3	44	1.53
10317960--10317990	3	10.3	3	100	0	62	64	0	0	35	0.94
10325178--10325224	18	2.6	19	74	12	55	57	0	23	19	1.41
10325184--10325234	23	2.2	24	86	10	70	50	0	23	25	1.49
10331642--10331673	16	2.0	16	93	0	55	53	3	18	25	1.59
10332152--10332592	195	2.3	195	82	3	496	27	20	26	26	1.99
10333954--10333979	3	8.7	3	100	0	52	34	0	30	34	1.58
10335170--10335213	22	2.0	22	95	0	79	34	9	27	29	1.87
10337292--10337317	3	8.7	3	100	0	52	0	30	0	69	0.89
10340289--10340321	11	3.0	11	90	0	57	21	15	0	63	1.30
10342996--10343149	56	2.7	57	79	10	172	43	2	3	50	1.32
10343325--10343370	16	2.9	16	93	0	83	26	28	8	36	1.86
10344217--10344278	16	4.1	14	73	18	54	75	0	9	14	1.03
10344247--10344283	18	2.0	19	89	5	58	75	0	13	10	1.04
10344478--10344512	5	6.8	5	96	3	61	80	0	0	20	0.72
10346041--10346066	13	2.0	13	100	0	52	23	46	15	15	1.83
10346196--10346548	50	7.0	50	68	12	204	26	19	17	35	1.94
10346057--10346586	100	5.3	101	79	3	543	27	18	17	36	1.94
10346057--10346593	200	2.7	199	86	0	732	27	18	18	36	1.94
10346567--10346777	50	4.2	50	73	3	190	26	20	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10346517--10346725	101	2.1	101	82	0	249	28	20	16	34	1.94
10346061--10346694	300	2.1	301	81	5	721	26	18	18	36	1.94
10346081--10346704	100	6.2	100	77	5	395	27	18	17	36	1.93
10346568--10346846	151	1.8	151	88	1	425	25	19	19	34	1.96
10348974--10349091	54	2.2	54	85	1	155	10	18	13	57	1.64
10350351--10350439	36	2.5	36	90	0	133	21	28	13	37	1.91
10354207--10354308	24	4.4	23	75	9	82	60	5	6	26	1.45
10354196--10354246	3	17.3	3	79	4	50	66	3	3	25	1.26
10354506--10354565	21	2.7	22	82	5	68	73	0	13	13	1.10
10359211--10359250	19	2.1	19	100	0	80	30	10	27	32	1.89
10373907--10373993	45	1.9	45	90	4	140	37	12	13	35	1.83
10379926--10379975	21	2.4	21	89	0	73	38	24	10	28	1.87
10380732--10380988	94	2.7	93	81	8	277	31	23	18	26	1.98
10381540--10381571	16	2.0	16	93	0	55	25	18	3	53	1.59
10385869--10385922	21	2.6	21	90	0	81	37	25	9	27	1.87
10386503--10386552	21	2.4	21	86	0	64	38	22	10	30	1.86
10387292--10387471	94	1.9	94	86	0	252	29	23	18	27	1.98
10388021--10388052	16	2.0	16	93	0	55	25	18	3	53	1.59
10428691--10428739	5	10.0	5	84	4	55	18	6	2	73	1.14
10428691--10428738	24	2.0	24	83	0	60	18	6	2	72	1.15
10434935--10434973	18	2.2	18	90	0	60	10	28	10	51	1.68
10435873--10435922	26	1.9	26	88	8	75	62	6	6	26	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10447571--10448499	309	3.0	310	97	0	1770	30	8	20	40	1.82
10451958--10452039	29	2.8	29	82	8	94	37	29	17	15	1.91
10455884--10455996	40	2.8	39	77	10	104	31	19	32	15	1.93
10471445--10472181	379	2.0	374	97	1	1393	30	18	14	37	1.90
10472232--10472272	21	2.0	21	85	9	57	17	39	0	43	1.49
10485857--10485891	16	2.2	16	100	0	70	25	22	14	37	1.92
10488146--10488186	17	2.4	18	84	8	50	70	2	9	17	1.25
10495992--10496034	22	2.0	22	86	9	61	53	9	2	34	1.46
10497178--10497283	40	2.6	40	82	4	106	33	18	30	17	1.95
10497223--10497299	20	3.8	20	77	11	77	32	22	32	12	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125