genome.fa.s6.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  56  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17196556--17196712	68	2.3	69	82	11	182	48	4	3	43	1.41
17196587--17196731	68	2.1	71	82	7	172	49	4	2	42	1.38
17202880--17202923	20	2.1	21	84	12	56	34	2	4	59	1.30
17208289--17208315	2	13.5	2	100	0	54	48	0	0	51	1.00
17211349--17211375	13	2.1	13	100	0	54	7	29	0	62	1.22
17212122--17212157	3	12.0	3	87	0	54	0	27	0	72	0.85
17213771--17213808	14	2.5	15	87	12	51	15	2	10	71	1.25
17217365--17217411	21	2.2	21	88	3	67	17	10	2	70	1.26
17218948--17218997	21	2.4	21	86	0	64	44	14	14	28	1.83
17218959--17218998	21	1.9	21	94	0	71	42	12	17	27	1.85
17223005--17223030	6	4.3	6	100	0	52	15	0	0	84	0.62
17223855--17224051	106	1.9	103	80	9	229	39	14	22	23	1.91
17224611--17224655	19	2.4	19	81	7	56	37	0	4	57	1.19
17226754--17226798	22	2.1	21	84	12	56	40	0	6	53	1.27
17228826--17228885	26	2.4	25	75	10	59	56	6	3	33	1.42
17231574--17231966	29	13.4	28	74	12	220	35	23	3	36	1.73
17231581--17231949	58	6.3	57	76	10	282	35	24	3	36	1.74
17231887--17231944	30	1.9	30	89	3	89	36	27	1	34	1.67
17232015--17232072	14	4.0	14	74	14	55	22	8	5	63	1.42
17234227--17234308	30	2.7	30	80	12	87	51	6	1	41	1.34
17242982--17243020	15	2.5	15	91	4	60	71	5	0	23	1.05
17242976--17243023	16	2.9	16	81	12	62	68	4	0	27	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17251035--17251392	30	12.1	30	75	6	264	36	2	25	35	1.69
17251010--17251392	59	6.5	56	76	14	176	37	2	25	35	1.68
17251006--17251293	88	3.3	87	77	8	280	37	2	24	35	1.70
17251215--17251387	89	1.9	90	86	5	244	36	1	26	35	1.64
17252813--17252860	7	6.6	7	80	15	53	54	0	2	43	1.12
17252825--17252858	17	1.9	18	94	5	61	58	0	2	38	1.13
17253248--17253405	85	1.9	85	82	5	203	25	23	15	35	1.94
17253447--17253612	84	2.0	84	83	4	210	25	21	16	36	1.94
17253653--17253726	37	2.0	37	86	5	105	22	16	20	40	1.91
17253504--17253849	160	2.2	159	85	2	453	23	20	17	38	1.93
17253999--17254200	41	4.9	41	88	0	269	31	18	18	30	1.96
17254457--17254836	49	7.7	49	73	5	228	20	31	15	33	1.93
17255015--17255051	7	5.3	7	96	0	65	2	16	24	56	1.53
17255775--17255877	7	14.0	7	77	17	68	1	18	0	78	0.90
17255775--17255877	16	7.0	14	74	19	68	1	18	0	78	0.90
17255780--17255863	35	2.3	35	84	8	98	0	20	1	78	0.82
17260717--17261113	30	13.3	30	81	6	382	37	1	26	34	1.67
17266001--17266040	21	1.9	21	89	0	62	27	22	17	32	1.96
17266176--17266389	71	3.0	70	82	5	252	27	26	14	31	1.95
17272331--17272364	16	2.1	17	88	5	52	64	5	0	29	1.17
17273003--17273040	15	2.5	15	83	16	51	63	2	0	34	1.09
17274734--17274761	1	28.0	1	100	0	56	0	0	100	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17279191--17279241	20	2.6	20	81	9	61	41	7	5	45	1.57
17290228--17290272	25	2.0	22	83	16	56	40	24	6	28	1.80
17291733--17291758	5	5.2	5	100	0	52	19	38	0	42	1.51
17291757--17291786	14	2.1	14	93	0	51	20	0	3	76	0.92
17292994--17293065	36	2.0	36	97	0	135	31	22	5	40	1.77
17294418--17294624	57	3.6	57	78	7	188	24	24	15	35	1.95
17294418--17294624	114	1.8	114	84	4	283	24	24	15	35	1.95
17294542--17294681	57	2.5	57	79	2	156	29	25	15	30	1.95
17313688--17313730	22	2.0	22	85	0	59	37	51	6	4	1.50
17317732--17317777	21	2.2	21	84	7	58	54	10	6	28	1.60
17322790--17322844	21	2.6	20	81	16	58	43	14	0	41	1.45
17323882--17323907	13	2.0	13	100	0	52	15	7	30	46	1.74
17325681--17325710	13	2.2	14	94	5	53	70	3	0	26	1.03
17332983--17333043	23	2.5	24	86	7	79	9	19	3	67	1.34
17333100--17333241	76	1.9	76	86	4	209	49	5	7	37	1.55
17333100--17333242	73	2.0	71	83	8	180	48	5	8	37	1.57
17333579--17333620	22	2.0	22	86	13	61	11	19	7	61	1.52
17333587--17333648	24	2.5	24	82	12	72	9	19	3	67	1.33
17333705--17333846	73	2.0	72	90	2	223	49	4	7	38	1.51
17334313--17334450	75	1.9	69	82	8	168	52	6	5	35	1.52
17332700--17335714	605	5.0	605	89	4	4519	39	12	12	34	1.82
17334795--17334851	23	2.7	21	84	15	73	12	17	1	68	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17334911--17335051	72	2.0	72	90	2	223	49	4	7	38	1.52
17335406--17335466	24	2.5	24	89	7	88	9	19	3	67	1.34
17338721--17338769	24	2.0	24	84	11	64	53	6	0	40	1.26
17340138--17340164	12	2.2	12	100	0	54	59	7	11	22	1.56
17340160--17340217	30	1.9	30	82	6	73	75	1	12	10	1.11
17343898--17343937	6	6.7	6	97	0	62	32	10	57	0	1.32
17344186--17344301	58	2.0	58	100	0	232	34	17	18	29	1.94
17345235--17345290	28	2.0	29	86	6	80	53	0	1	44	1.11
17350936--17351050	54	2.1	54	81	3	131	34	20	13	31	1.91
17350958--17351113	54	2.9	54	78	4	154	35	18	12	33	1.88
17351915--17351957	17	2.4	18	92	3	70	11	6	11	69	1.35
17351901--17351943	12	3.6	12	80	0	59	13	4	9	72	1.26
17352117--17352163	22	2.0	24	84	8	62	25	0	6	68	1.13
17355276--17355321	21	2.2	21	92	0	74	23	26	21	28	1.99
17356763--17356865	26	4.1	25	74	9	102	22	14	29	33	1.94
17356769--17356893	51	2.5	50	83	6	146	20	14	28	36	1.92
17359812--17359908	34	2.9	33	81	3	86	30	27	21	19	1.98
17359805--17360002	108	1.8	108	82	6	258	30	24	22	22	1.99
17362380--17362413	2	17.0	2	100	0	68	50	0	0	50	1.00
17362517--17362578	28	2.2	28	81	18	69	37	0	11	51	1.38
17362810--17362836	1	27.0	1	100	0	54	0	0	100	0	0.00
17363370--17363410	21	2.0	21	85	0	55	70	12	4	12	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17367948--17367978	16	1.9	16	93	0	53	54	12	0	32	1.38
17368133--17368182	21	2.3	22	89	3	75	16	50	16	18	1.79
17373917--17374052	62	2.3	60	84	7	170	14	22	9	53	1.69
17380178--17380286	2	54.5	2	100	0	218	50	49	0	0	1.00
17380570--17380611	22	1.9	22	95	0	75	16	30	16	35	1.92
17382272--17382311	21	1.9	21	84	0	53	35	12	12	40	1.81
17383783--17383858	26	2.9	26	82	0	71	30	14	13	42	1.84
17388813--17388962	25	6.0	25	84	3	140	22	15	24	37	1.93
17388810--17388937	50	2.6	49	80	3	157	23	14	25	36	1.92
17410524--17410579	24	2.3	24	96	0	103	26	19	25	28	1.99
17415548--17415592	12	3.8	12	82	11	56	64	0	35	0	0.94
17415987--17416031	17	2.6	17	82	0	54	17	6	11	64	1.46
17416000--17416039	17	2.4	17	83	12	55	15	7	12	65	1.47
17416588--17416621	18	1.9	17	88	5	50	73	0	26	0	0.83
17423574--17423813	51	4.6	51	84	3	284	30	22	14	33	1.93
17430868--17431061	51	3.8	51	86	1	262	29	23	13	32	1.94
17430824--17431053	51	4.5	51	81	4	248	30	23	14	32	1.94
17435193--17435232	15	2.4	18	80	12	50	25	20	15	40	1.90
17440967--17441041	25	3.0	25	80	5	89	25	13	24	37	1.91
17451631--17451688	26	2.2	26	81	0	71	31	24	22	22	1.99
17451631--17451701	26	2.7	26	80	0	70	29	25	21	23	1.99
17454158--17454191	17	2.0	17	94	0	59	32	17	2	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17460324--17460527	100	2.0	100	87	0	291	31	23	18	25	1.97
17461464--17461548	28	2.9	29	70	20	79	47	5	0	47	1.26
17463811--17463853	18	2.4	18	88	7	61	39	23	25	11	1.88
17463811--17463875	18	3.6	17	74	15	60	43	24	21	10	1.84
17464112--17464148	3	12.3	3	100	0	74	32	0	0	67	0.91
17464147--17464193	3	15.7	3	100	0	94	0	0	31	68	0.90
17475405--17475459	17	2.8	19	73	24	51	52	0	0	47	1.00
17475411--17475454	23	2.0	20	87	12	61	45	0	0	54	0.99
17475414--17475485	29	2.4	30	86	8	112	52	0	0	47	1.00
17476366--17476423	6	9.3	6	81	7	53	41	1	56	0	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125