genome.fa.s6.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  59  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18083441--18083465	7	3.6	7	100	0	50	60	40	0	0	0.97
18091436--18091502	28	2.4	28	87	2	89	50	5	20	22	1.69
18091442--18091602	86	1.9	86	81	2	198	47	8	19	24	1.77
18091606--18091686	28	2.8	29	75	1	83	50	9	14	24	1.73
18091450--18091694	115	2.1	115	80	5	264	48	8	18	24	1.76
18091436--18091694	29	9.1	28	72	7	153	48	8	18	24	1.75
18091559--18091715	57	2.7	57	82	1	170	46	8	17	27	1.77
18091960--18093577	539	3.0	536	94	2	2823	43	7	15	33	1.75
18098499--18098542	19	2.3	19	84	7	54	29	4	2	63	1.26
18098536--18098571	18	2.1	18	89	5	56	30	11	2	55	1.49
18098510--18098578	19	3.7	19	76	16	72	31	7	2	57	1.40
18098519--18098577	18	3.2	18	72	15	50	32	6	3	57	1.41
18098582--18098626	20	2.3	20	92	3	74	42	0	0	57	0.98
18107211--18107283	33	2.2	33	90	0	110	27	19	19	34	1.96
18113623--18113816	58	3.4	57	76	13	173	51	10	15	23	1.74
18113630--18113816	29	6.5	29	73	9	134	50	10	15	22	1.75
18113686--18113846	87	1.9	86	80	8	193	51	10	13	24	1.72
18113623--18113905	117	2.4	115	79	5	284	50	10	14	25	1.74
18115203--18115270	36	1.9	36	81	3	84	35	10	1	52	1.44
18118354--18118386	16	2.1	15	94	5	57	51	6	0	42	1.26
18123615--18123719	17	5.9	18	76	14	85	58	1	5	34	1.33
18123620--18123717	19	5.6	18	78	10	96	57	2	5	35	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18123698--18123738	21	1.9	21	85	5	55	56	2	9	31	1.45
18133079--18133112	17	2.0	17	100	0	68	11	35	11	41	1.78
18134026--18134050	13	1.9	13	100	0	50	64	8	0	28	1.22
18135579--18135772	58	3.4	59	75	10	195	47	8	18	25	1.77
18135581--18135677	28	3.4	28	72	9	88	46	9	20	23	1.79
18135542--18135772	58	4.0	56	73	13	166	46	8	19	25	1.77
18144921--18144965	9	4.9	10	84	13	53	71	2	6	20	1.20
18144976--18145096	7	17.7	7	81	13	105	14	14	0	70	1.22
18144977--18145095	6	19.7	6	75	14	86	14	15	0	69	1.23
18144974--18145013	9	4.6	9	84	15	57	10	12	0	77	0.99
18144974--18145120	24	5.8	25	70	26	89	15	12	0	71	1.19
18144976--18145039	26	2.8	24	80	20	66	12	14	0	73	1.10
18145012--18145096	38	2.2	38	83	4	100	15	15	1	68	1.28
18144970--18145096	25	5.0	25	73	16	93	14	14	0	70	1.22
18145094--18145126	7	4.6	7	96	3	57	24	0	0	75	0.80
18146050--18146094	15	3.5	13	88	11	58	73	0	13	13	1.10
18146075--18146113	9	4.2	9	83	6	51	79	0	17	2	0.84
18146075--18146112	19	2.0	19	89	0	58	81	0	15	2	0.80
18148043--18148776	216	3.5	201	79	10	560	29	17	14	39	1.88
18149494--18149531	17	2.2	18	90	9	62	34	0	15	50	1.45
18151088--18151133	21	2.2	21	84	7	58	28	30	10	30	1.91
18158254--18158292	21	1.9	21	89	5	62	41	15	17	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18158289--18158313	13	1.9	13	100	0	50	48	12	16	24	1.79
18159217--18159266	17	2.8	18	78	6	57	48	10	22	20	1.79
18168537--18168575	21	1.9	21	89	5	62	41	15	17	25	1.89
18170744--18170805	17	3.8	17	76	18	60	56	16	11	16	1.67
18174723--18174966	51	4.8	51	87	2	321	33	16	22	27	1.95
18182532--18184294	878	2.0	881	90	1	2750	36	13	12	37	1.84
18184790--18184889	33	3.0	33	86	0	128	31	22	20	27	1.98
18201952--18202027	28	2.7	28	73	15	68	32	3	2	60	1.29
18201952--18202029	9	8.4	9	72	14	61	32	3	2	61	1.27
18206808--18206849	17	2.5	17	84	3	50	21	11	11	54	1.68
18207427--18207492	13	4.7	14	75	14	55	77	1	18	3	0.98
18207427--18207476	15	3.5	15	81	13	52	80	2	16	2	0.91
18207430--18207481	25	2.2	24	83	13	63	78	1	17	1	0.93
18211349--18211395	25	1.9	24	87	12	69	53	12	14	19	1.73
18216960--18217010	17	2.9	17	78	16	59	56	3	5	33	1.42
18216973--18217034	21	3.0	20	84	11	72	54	1	6	37	1.36
18216981--18217034	23	2.4	22	87	3	63	51	0	7	40	1.30
18217704--18217739	2	18.0	2	100	0	72	50	0	0	50	1.00
18225678--18225716	2	19.5	2	100	0	78	51	0	48	0	1.00
18227152--18227222	33	2.2	33	89	0	106	29	16	21	32	1.95
18235861--18236120	29	9.1	28	70	8	157	47	8	19	24	1.77
18235861--18236184	58	5.6	57	74	8	201	46	9	19	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18239275--18240229	216	4.4	216	82	2	1098	28	18	13	39	1.88
18240573--18240604	3	10.7	3	100	0	64	34	0	0	65	0.93
18240604--18240628	3	8.3	3	100	0	50	0	0	32	68	0.90
18245396--18245420	5	5.0	5	100	0	50	80	0	0	20	0.72
18255412--18255449	14	2.7	15	84	8	53	23	5	0	71	1.07
18255503--18255635	6	21.7	6	74	17	89	13	14	0	71	1.19
18255509--18255539	10	3.1	10	95	0	53	9	12	0	77	0.99
18255502--18255620	7	16.7	7	80	11	102	14	14	0	70	1.21
18256590--18256635	16	3.3	14	88	11	60	73	0	13	13	1.09
18256603--18256644	12	3.4	12	87	9	50	78	0	16	4	0.91
18258587--18259343	216	3.5	215	83	4	912	28	16	14	39	1.88
18260030--18260067	17	2.2	18	90	9	62	34	0	15	50	1.45
18265767--18266163	42	9.5	42	86	1	544	21	18	23	36	1.95
18266570--18266598	3	9.7	3	100	0	58	31	0	0	68	0.89
18267145--18267521	51	7.7	50	67	17	173	41	3	9	45	1.53
18267028--18267668	148	4.4	144	86	6	844	41	3	9	44	1.54
18267028--18267668	144	4.4	146	86	5	873	41	3	9	44	1.54
18268216--18268264	25	2.0	25	84	8	64	26	10	2	61	1.39
18278358--18278403	24	1.9	23	86	8	65	54	4	4	36	1.40
18278466--18278499	13	2.6	13	85	0	50	58	11	0	29	1.33
18279442--18279513	21	3.3	21	84	5	90	9	12	1	76	1.08
18279458--18279496	11	3.5	11	85	0	60	5	7	0	87	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18280469--18280521	19	2.9	18	86	8	72	24	7	1	66	1.28
18283162--18283257	41	2.3	41	94	0	165	28	6	29	36	1.81
18285391--18285423	16	2.1	15	94	5	57	51	6	0	42	1.26
18290047--18290071	12	2.1	12	100	0	50	36	8	16	40	1.77
18306129--18306167	21	1.9	21	89	5	62	41	15	17	25	1.89
18306164--18306188	13	1.9	13	100	0	50	48	12	16	24	1.79
18325167--18325264	33	3.0	33	87	0	133	30	18	21	29	1.97
18340318--18340360	21	2.0	23	86	9	63	44	2	16	37	1.60
18341158--18341243	18	4.8	18	78	2	102	20	23	24	31	1.98
18342441--18342474	18	1.9	18	88	5	52	20	2	8	67	1.31
18342526--18342573	18	2.6	19	80	6	62	45	0	0	54	0.99
18345797--18345889	33	2.8	33	91	0	141	30	21	20	27	1.98
18353620--18353688	17	3.7	18	70	25	63	31	2	2	62	1.25
18353621--18353688	9	7.3	9	74	11	57	30	2	2	63	1.24
18353696--18353744	19	2.6	19	83	0	62	42	0	0	57	0.99
18358645--18358671	12	2.2	12	100	0	54	33	33	0	33	1.58
18358928--18358970	17	2.5	17	84	0	50	18	11	13	55	1.68
18359547--18359596	15	3.5	15	81	13	52	80	2	16	2	0.91
18359550--18359601	25	2.2	24	83	13	63	78	1	17	1	0.93
18379825--18379881	25	2.3	26	82	14	75	31	8	0	59	1.28
18383198--18383230	16	2.1	16	94	0	57	45	15	18	21	1.85
18408106--18410367	216	10.5	214	81	4	2405	41	13	16	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18408106--18410367	431	5.3	429	81	4	2447	41	13	16	27	1.87
18409903--18409943	19	2.3	18	84	16	50	53	12	4	29	1.58
18410370--18410590	110	2.0	110	99	0	433	29	14	11	44	1.80
18410487--18416817	216	29.3	215	76	6	4950	28	17	13	40	1.87
18410487--18418482	431	18.4	430	74	8	5387	28	17	13	40	1.87
18410487--18416817	647	9.8	644	76	7	5233	28	17	13	40	1.87
18416645--18416994	177	2.0	177	81	4	411	28	18	12	40	1.87
18417147--18418482	216	6.2	214	77	7	1158	29	17	12	40	1.87
18417350--18418481	424	2.7	421	79	7	1142	29	17	12	40	1.86
18418333--18418647	158	2.0	158	84	4	413	29	16	12	41	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125