genome.fa.s6.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  75  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23450363--23450395	16	2.0	17	94	5	59	30	0	3	66	1.06
23450456--23450503	24	2.0	23	88	4	69	70	2	14	12	1.25
23450456--23450515	24	2.5	24	83	8	68	70	3	13	13	1.30
23450475--23450531	25	2.3	25	81	0	69	70	3	17	8	1.28
23453087--23453289	52	3.9	52	82	6	230	35	22	14	26	1.93
23453089--23453235	77	1.9	77	83	5	190	36	21	14	26	1.93
23453086--23453290	104	2.0	106	85	3	281	35	22	14	26	1.93
23453087--23453322	27	9.0	27	76	9	186	37	22	13	25	1.92
23453087--23453326	52	4.6	51	79	8	191	37	22	13	25	1.91
23453141--23453322	79	2.3	79	79	5	183	36	23	13	26	1.91
23461696--23461740	19	2.5	18	85	7	56	17	13	8	60	1.58
23470954--23471005	22	2.3	23	77	9	63	30	17	11	40	1.85
23471013--23471056	12	3.7	12	78	0	52	18	13	18	50	1.79
23473687--23473751	33	2.0	33	81	6	78	40	3	23	33	1.70
23474073--23474114	21	2.0	21	90	0	66	40	16	7	35	1.76
23476290--23476352	24	2.6	24	79	2	63	30	22	19	28	1.98
23488706--23488745	21	1.9	21	84	0	53	30	20	17	32	1.95
23492320--23492524	55	3.7	55	85	3	250	27	28	21	22	1.99
23492477--23492572	43	2.2	43	83	3	113	28	28	20	22	1.99
23496445--23496491	18	2.6	18	89	0	76	42	14	19	23	1.88
23497343--23497443	38	2.7	38	76	11	93	27	20	19	31	1.97
23517102--23517179	6	13.3	6	73	20	67	41	3	1	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23518936--23519165	30	7.6	30	86	4	302	37	22	3	36	1.70
23518941--23519215	60	4.6	60	87	3	333	38	21	3	36	1.70
23518941--23519231	90	3.2	88	82	6	311	38	22	3	36	1.70
23519190--23519250	29	2.1	28	81	3	68	31	32	1	34	1.68
23519174--23519236	29	2.1	30	80	8	76	34	30	3	31	1.74
23531037--23531161	38	3.4	37	71	10	103	36	16	16	32	1.90
23531025--23532023	76	13.4	76	82	10	1118	33	16	18	31	1.93
23531225--23531936	38	19.3	37	65	23	238	33	16	18	31	1.93
23530934--23532021	519	2.1	505	90	4	1716	33	16	18	31	1.93
23532395--23532477	6	14.0	6	74	20	68	43	3	1	51	1.26
23532404--23532469	25	2.8	23	78	13	71	42	4	1	51	1.31
23533277--23533322	23	1.9	25	86	8	69	63	2	0	34	1.07
23534300--23534553	30	8.6	30	85	9	294	36	24	3	36	1.73
23534314--23534553	60	4.1	60	88	4	339	36	23	3	36	1.71
23534314--23534580	90	3.0	90	85	4	343	37	23	3	35	1.72
23557452--23557542	27	3.4	27	86	6	123	25	24	23	27	2.00
23557455--23557533	25	3.1	25	88	3	104	25	21	22	30	1.99
23557577--23557650	21	3.6	21	77	14	82	43	27	20	9	1.82
23557573--23557651	40	2.0	39	95	2	140	43	27	18	10	1.83
23560209--23560447	119	2.0	119	95	0	433	33	27	6	32	1.83
23562091--23562125	18	1.9	18	88	0	52	22	11	14	51	1.74
23562781--23563901	379	3.0	380	91	1	1750	36	23	11	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23564035--23564164	23	5.7	23	84	0	161	46	15	6	31	1.70
23564035--23564310	46	6.2	46	81	6	307	46	14	5	33	1.68
23564126--23564254	38	3.2	38	71	17	114	46	12	6	34	1.67
23564057--23564271	107	2.0	107	87	0	304	46	13	6	33	1.68
23564103--23564285	61	2.9	61	79	6	195	45	13	6	34	1.68
23564035--23564254	84	2.5	85	81	8	246	46	14	5	33	1.68
23564050--23564285	130	1.8	130	88	0	364	46	13	5	33	1.67
23564164--23564310	23	6.4	23	87	1	197	46	12	5	35	1.65
23575869--23575897	7	4.3	7	91	8	51	0	27	0	72	0.85
23576620--23576666	21	2.2	21	84	0	58	2	29	12	55	1.49
23589482--23589556	36	2.1	36	92	0	123	36	25	25	13	1.92
23589875--23590028	42	3.7	42	85	3	159	16	25	16	41	1.89
23589917--23590032	42	2.8	42	90	0	178	15	25	15	43	1.86
23591122--23591190	15	4.3	16	75	17	72	0	18	0	81	0.70
23591121--23591190	30	2.3	30	88	9	106	0	20	0	80	0.72
23592078--23592124	5	10.0	5	82	13	64	0	17	0	82	0.66
23592067--23592127	27	2.2	27	85	8	79	1	18	1	78	0.91
23592067--23592127	9	6.7	9	79	12	54	1	18	1	78	0.91
23592079--23592124	18	2.5	19	89	7	76	0	17	0	82	0.67
23592082--23592129	23	2.1	23	84	7	62	0	16	0	83	0.65
23592087--23592129	14	3.1	14	80	12	54	0	16	0	83	0.64
23606942--23606989	24	1.9	26	84	16	66	45	0	22	31	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23607073--23607123	23	2.2	23	89	6	77	9	29	23	37	1.87
23612554--23612627	23	3.3	23	84	3	105	9	28	24	37	1.86
23612560--23612657	45	2.1	45	85	7	126	12	26	21	39	1.88
23615406--23615475	28	2.4	28	76	19	72	51	4	0	44	1.21
23619266--23619414	62	2.5	60	76	8	158	30	16	18	34	1.93
23620209--23620299	29	3.1	30	87	3	130	63	4	7	24	1.39
23620543--23621076	267	2.0	267	94	0	933	24	21	27	26	1.99
23621915--23622186	92	2.9	94	90	4	417	46	4	5	43	1.47
23624392--23624803	205	2.0	205	93	1	711	25	28	17	29	1.97
23626289--23626349	31	2.0	30	90	3	95	40	21	13	24	1.88
23626518--23627126	60	10.5	58	79	11	335	38	16	15	29	1.90
23626518--23626823	122	2.5	118	81	6	348	41	14	16	27	1.87
23626518--23627171	57	11.3	60	80	10	415	38	16	16	28	1.90
23626808--23627179	169	2.2	168	81	8	440	34	18	15	30	1.93
23626667--23627171	112	4.5	110	77	12	401	37	17	16	28	1.91
23627579--23627616	20	1.9	20	94	0	67	65	5	0	28	1.14
23627576--23627626	20	2.6	19	81	6	66	66	5	0	27	1.14
23629581--23629640	26	2.2	28	80	11	72	65	0	0	35	0.93
23631315--23631390	36	2.1	38	90	5	120	10	7	11	69	1.36
23631322--23631399	36	2.2	35	81	9	86	11	8	12	66	1.44
23634262--23634291	15	2.0	15	93	0	51	70	0	6	23	1.11
23634896--23634923	14	2.0	14	100	0	56	35	14	7	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23636940--23637036	43	2.3	43	96	0	176	47	18	23	10	1.79
23638362--23638444	38	2.2	38	86	4	114	24	22	22	30	1.99
23639463--23639496	17	2.0	17	94	0	59	50	11	20	17	1.77
23641904--23641986	38	2.2	38	87	8	116	22	19	24	33	1.97
23642193--23642272	39	2.1	39	97	0	151	21	32	6	40	1.78
23643881--23643935	27	2.0	29	82	7	69	70	1	9	18	1.22
23644703--23644917	29	7.5	29	77	8	165	38	22	2	36	1.67
23644702--23644917	58	3.7	57	76	8	186	37	23	2	36	1.68
23644683--23644874	29	6.7	27	78	10	143	37	25	2	34	1.70
23644680--23644903	86	2.6	88	83	2	265	37	24	2	35	1.70
23646816--23646884	37	1.9	35	82	11	86	59	5	7	27	1.47
23647492--23647709	60	3.7	59	76	5	215	33	23	3	39	1.71
23647509--23647709	30	6.8	30	79	11	189	34	22	2	39	1.70
23649672--23649717	18	2.5	18	85	3	56	47	0	0	52	1.00
23663535--23663599	32	2.0	32	96	0	121	18	18	20	43	1.89
23664090--23664129	18	2.2	18	90	0	62	42	32	12	12	1.80
23670195--23670242	12	3.7	12	81	15	51	68	0	27	4	1.07
23684021--23684073	26	2.0	26	96	0	97	28	18	20	32	1.97
23696450--23696510	29	2.1	29	93	0	104	49	3	40	6	1.45
23696450--23696524	29	2.6	28	81	12	89	46	4	42	6	1.48
23697628--23697758	41	3.2	41	80	4	140	35	14	27	22	1.93
23697778--23697816	18	2.3	17	91	8	62	46	5	5	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23700452--23700501	19	2.5	20	83	9	66	62	2	0	36	1.07
23700509--23700550	20	2.2	20	80	20	54	59	4	0	35	1.19
23702628--23702663	2	18.0	2	100	0	72	50	0	0	50	1.00
23702706--23702734	15	1.9	15	100	0	58	24	0	27	48	1.51
23702780--23703007	43	5.3	43	86	1	296	26	16	26	30	1.97
23707285--23707331	22	2.1	22	84	0	58	46	14	19	19	1.84
23707949--23707973	13	1.9	13	100	0	50	16	40	24	20	1.91
23711186--23711237	20	2.6	20	93	0	86	19	19	21	40	1.92
23717373--23717487	58	2.0	58	96	0	212	46	7	11	33	1.68
23718940--23718973	18	1.9	18	94	5	61	44	11	8	35	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125