genome.fa.s6.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  34  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9769233--9769272	15	2.7	15	92	0	62	60	2	5	32	1.32
9769919--9769953	15	2.3	15	90	0	52	74	0	22	2	0.95
9789345--9789392	17	2.8	17	96	0	87	18	25	12	43	1.85
9791225--9791424	80	2.5	80	90	3	314	31	27	19	22	1.98
9794183--9794237	23	2.5	22	81	3	56	50	23	1	23	1.58
9795286--9795315	16	1.9	16	93	6	53	63	3	0	33	1.11
9797585--9797793	80	2.6	80	85	1	267	33	25	16	24	1.96
9798970--9798998	15	2.0	15	93	6	51	44	13	6	34	1.71
9801937--9802121	18	10.3	18	81	2	219	22	19	25	32	1.97
9801937--9802121	54	3.4	54	85	5	266	22	19	25	32	1.97
9806296--9806358	32	2.0	32	93	0	108	25	4	7	61	1.43
9811379--9811453	32	2.3	32	84	6	98	28	4	8	60	1.43
9811403--9811963	280	2.0	280	100	0	1122	29	11	12	46	1.77
9818694--9818734	21	2.0	20	90	9	64	41	0	0	58	0.98
9818680--9818738	18	3.5	17	77	11	59	44	0	0	55	0.99
9820828--9820875	18	2.7	18	81	12	55	43	0	2	54	1.12
9820824--9820880	21	2.8	21	85	15	68	42	0	1	56	1.10
9822966--9823028	18	3.5	17	74	10	54	41	1	0	57	1.08
9825130--9825191	23	2.7	23	85	9	83	43	0	0	56	0.99
9825133--9825194	18	3.5	17	78	10	63	43	0	0	56	0.99
9827263--9827304	21	2.0	21	100	0	84	33	0	14	52	1.42
9827266--9827312	21	2.2	21	88	0	67	40	2	10	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9832492--9832522	11	2.8	11	90	0	53	51	0	0	48	1.00
9832835--9832898	11	5.8	11	77	5	67	6	6	14	73	1.23
9833051--9833110	11	5.4	11	73	16	52	28	0	1	70	0.97
9833083--9833124	19	2.2	20	91	4	68	28	0	0	71	0.86
9833886--9833910	7	3.6	7	100	0	50	40	0	16	44	1.47
9834950--9834988	19	2.1	19	100	0	78	5	5	30	58	1.41
9840250--9840522	30	9.2	28	76	12	199	37	25	2	35	1.68
9840250--9840539	60	4.9	60	79	8	256	37	25	2	35	1.69
9840288--9840549	30	8.8	30	79	11	229	36	26	2	34	1.71
9840288--9840566	59	4.7	56	76	12	170	35	27	2	34	1.72
9842601--9843089	123	4.0	123	91	1	750	36	11	8	43	1.71
9869241--9869328	38	2.3	38	78	1	97	31	12	22	32	1.91
9869241--9869498	37	7.0	38	69	11	142	30	14	21	33	1.93
9869237--9869541	147	2.1	149	94	1	542	29	16	22	32	1.96
9876590--9876648	29	2.0	30	86	3	84	35	5	10	49	1.59
9877058--9877097	18	2.2	18	91	8	64	17	0	2	80	0.83
9885297--9885336	17	2.4	17	86	0	53	17	17	12	52	1.74
9885297--9885363	34	2.0	34	85	5	91	16	17	13	52	1.75
9885305--9885363	17	3.5	17	85	0	82	16	15	13	54	1.72
9889436--9889460	4	6.2	4	100	0	50	76	0	0	24	0.80
9893641--9893839	96	2.1	96	94	0	344	30	17	17	35	1.92
9898552--9898594	20	2.2	20	87	8	61	46	11	9	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9902972--9903024	17	3.1	17	86	0	61	54	15	11	18	1.70
9903137--9903177	21	2.0	21	85	9	57	2	26	9	60	1.40
9905366--9905404	15	2.7	14	88	7	60	71	2	15	10	1.23
9922454--9922526	21	3.5	21	76	14	78	28	13	26	31	1.94
9925316--9925489	90	1.9	90	91	0	285	28	18	25	27	1.98
9925318--9925512	90	2.2	90	87	1	284	27	20	25	27	1.99
9927495--9927623	40	3.2	40	95	0	240	20	31	10	37	1.86
9927557--9927801	100	2.5	100	95	0	445	22	30	11	35	1.89
9928982--9929023	21	2.1	20	91	8	68	2	28	0	69	1.01
9933340--9933380	12	3.4	12	81	18	50	0	34	0	65	0.93
9951791--9951841	24	2.1	24	88	0	75	25	21	23	29	1.99
9955121--9955177	29	2.0	29	83	10	73	71	3	17	7	1.22
9955153--9955197	21	2.0	23	83	8	58	64	6	20	8	1.44
9967907--9967946	18	2.2	18	95	0	71	37	20	20	22	1.94
9974547--9974577	16	1.9	16	93	0	53	22	22	0	54	1.44
9975995--9976023	15	1.9	15	100	0	58	20	31	20	27	1.98
9977339--9977453	13	8.2	13	66	21	54	50	1	0	46	1.17
9977410--9977459	15	3.6	15	74	20	63	52	0	0	48	1.00
9977406--9977457	26	2.0	25	92	3	86	50	0	0	50	1.00
9977383--9977447	19	3.3	19	69	21	53	50	1	0	47	1.10
9987111--9987380	102	2.6	102	88	0	396	25	26	25	22	2.00
9987176--9987342	35	4.9	33	70	15	117	24	27	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9987762--9988160	130	3.1	132	91	4	643	39	18	5	37	1.74
9990769--9990823	28	2.0	28	82	7	67	18	5	1	74	1.10
9990782--9990883	39	2.6	39	84	9	136	22	6	0	70	1.10
9990787--9990872	38	2.2	39	89	4	129	23	8	0	68	1.16
9990850--9990894	22	2.1	21	87	4	63	17	6	2	73	1.15
9990782--9990894	10	10.8	10	71	21	56	21	7	0	70	1.16
9990791--9990904	38	3.1	37	78	13	119	21	9	0	67	1.25
9993350--9993399	23	2.1	24	85	10	68	10	16	6	68	1.38
10011673--10011714	18	2.4	18	92	4	68	50	7	19	23	1.72
10011673--10011725	17	3.1	17	78	8	54	54	7	15	22	1.65
10019665--10019707	17	2.5	17	88	0	59	55	16	11	16	1.68
10028967--10028994	7	4.0	7	100	0	56	14	0	42	42	1.45
10030475--10030523	18	2.7	18	83	0	62	2	20	2	75	1.00
10031547--10031579	13	2.3	15	90	10	52	0	33	0	66	0.92
10043532--10043575	22	2.0	22	100	0	88	18	27	4	50	1.66
10056402--10056437	16	2.2	16	90	0	54	19	11	0	69	1.18
10065683--10065725	21	2.0	21	86	8	61	72	6	13	6	1.27
10070626--10070679	21	2.6	21	87	0	72	37	7	27	27	1.84
10077706--10077758	21	2.5	21	75	0	52	35	13	26	24	1.92
10081383--10081428	22	2.2	20	84	7	56	76	6	0	17	1.00
10083131--10083301	50	3.4	49	68	20	129	26	20	18	34	1.95
10083074--10083309	100	2.3	100	86	4	332	25	19	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10083074--10083343	100	2.7	99	82	6	278	25	21	18	34	1.96
10090697--10090732	17	2.1	17	89	0	54	44	2	0	52	1.15
10091571--10091681	30	3.7	29	69	20	86	35	2	0	61	1.17
10091571--10091619	19	2.6	18	77	6	53	32	4	0	63	1.13
10091596--10091643	23	2.1	23	85	14	64	37	4	0	58	1.18
10102616--10102677	27	2.3	28	75	8	65	38	1	4	54	1.31
10103485--10104031	43	12.7	42	75	5	148	43	21	14	20	1.87
10103542--10104031	86	5.7	86	77	4	216	44	21	14	19	1.86
10103452--10104027	129	4.5	129	76	5	441	43	21	14	20	1.88
10105765--10105808	2	22.0	2	100	0	88	50	0	0	50	1.00
10107448--10107512	25	2.6	25	85	2	87	27	24	20	27	1.99
10112663--10112704	5	8.4	5	100	0	84	19	19	0	61	1.34
10116572--10116966	43	9.2	43	82	0	421	28	26	18	27	1.98
10116577--10116962	129	3.0	129	83	3	470	28	25	18	27	1.98
10120080--10120205	41	3.1	39	79	7	135	22	27	15	34	1.94
10120080--10120171	40	2.3	40	84	5	123	23	26	16	33	1.95
10121571--10121702	60	2.3	57	80	9	133	41	7	12	37	1.72
10122873--10123179	81	3.8	81	81	5	363	19	28	17	34	1.95
10122869--10123218	41	8.6	41	84	3	388	20	28	16	34	1.94
10123195--10123308	40	2.8	39	88	5	174	22	21	19	36	1.95
10123794--10123845	22	2.4	22	80	6	61	44	0	3	51	1.19
10124385--10124423	18	2.2	18	90	0	60	17	0	23	58	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10131780--10132118	169	2.0	169	97	0	633	24	18	20	36	1.95
10132145--10132742	42	14.4	42	82	8	683	24	16	27	30	1.97
10132145--10132742	81	7.2	81	84	5	695	24	16	27	30	1.97
10132959--10133076	49	2.4	49	82	0	155	21	25	17	35	1.95
10132959--10133202	97	2.5	98	79	4	258	20	25	17	37	1.93
10133604--10133808	112	1.8	112	91	2	340	40	10	20	29	1.85
10134769--10134811	13	3.2	13	83	9	52	72	4	6	16	1.24
10140660--10140724	16	3.8	16	72	18	58	12	23	30	33	1.91
10140676--10140739	21	3.3	20	70	20	64	12	21	31	34	1.91
10140655--10140743	37	2.4	37	98	0	169	12	20	30	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125