genome.fa.s6.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  121  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38126839--38126889	16	3.2	17	83	8	63	64	1	0	33	1.05
38132287--38132330	13	3.4	13	84	9	54	65	0	0	34	0.93
38133649--38133789	69	2.0	69	100	0	282	24	34	5	36	1.79
38146766--38146847	25	3.2	25	96	3	155	57	3	18	20	1.55
38146766--38146844	26	3.1	26	98	1	151	58	3	18	18	1.54
38153326--38153360	17	2.1	17	94	0	61	45	0	11	42	1.40
38161843--38161890	16	3.1	15	77	19	53	77	8	0	14	0.99
38177848--38177886	14	2.6	16	88	12	64	33	7	10	48	1.66
38182439--38182523	39	2.3	36	79	6	98	43	14	17	24	1.86
38182535--38182629	39	2.4	39	79	6	113	34	13	26	25	1.93
38185967--38186007	15	2.6	16	92	3	66	60	2	21	14	1.45
38186419--38186461	20	2.2	19	87	4	59	18	0	20	60	1.36
38186428--38186467	19	2.0	20	90	4	64	12	0	25	62	1.30
38187212--38187239	2	14.0	2	100	0	56	50	0	0	50	1.00
38192569--38192599	15	2.1	15	93	0	53	35	0	0	64	0.94
38192972--38193021	25	2.0	25	84	0	64	34	10	2	54	1.45
38194331--38194677	173	2.0	173	100	0	694	37	9	10	42	1.72
38212010--38212053	22	2.0	22	86	0	61	27	2	2	68	1.14
38221164--38221197	17	1.9	17	94	5	59	73	0	0	26	0.83
38222907--38222951	21	2.1	21	83	0	54	57	2	2	37	1.23
38242666--38242696	16	1.9	16	93	0	53	41	22	16	19	1.89
38254763--38254898	67	2.0	67	98	0	263	45	5	16	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38254860--38254938	39	2.1	38	90	2	122	44	7	13	34	1.73
38258597--38258654	28	2.0	30	86	6	84	55	29	3	12	1.53
38258637--38258681	4	11.8	4	81	9	58	48	22	2	26	1.62
38258639--38258681	14	2.9	14	89	6	59	48	23	2	25	1.62
38265795--38265863	31	2.2	31	82	10	88	42	5	10	42	1.62
38281191--38281237	24	2.0	24	95	0	85	48	21	0	29	1.50
38282409--38282548	51	2.8	50	80	6	122	37	13	7	40	1.74
38282926--38282953	2	14.0	2	100	0	56	50	0	0	50	1.00
38284170--38284217	23	2.1	22	81	11	53	64	2	0	33	1.05
38287015--38287062	20	2.5	20	75	3	53	31	4	0	64	1.12
38296717--38296744	2	14.0	2	100	0	56	50	0	0	50	1.00
38298925--38299015	42	2.2	41	92	2	146	30	27	16	25	1.97
38303236--38303346	4	27.8	4	94	0	132	26	8	23	42	1.82
38305062--38305104	19	2.3	19	84	8	52	72	0	2	25	0.97
38307246--38307285	20	2.0	20	90	4	64	52	15	20	12	1.74
38324491--38324568	40	2.0	40	81	0	93	35	8	6	48	1.60
38326307--38326364	24	2.5	24	78	18	68	10	31	20	37	1.86
38336181--38336219	20	2.0	20	89	0	60	51	2	0	46	1.14
38336212--38336263	19	2.7	19	74	14	61	61	0	3	34	1.14
38336264--38336327	26	2.5	26	100	0	128	31	34	18	15	1.93
38336769--38336816	25	1.9	25	82	0	60	31	20	4	43	1.71
38338161--38338185	13	1.9	13	100	0	50	56	12	8	24	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38342123--38342156	10	3.2	10	84	15	50	73	0	2	23	0.97
38347121--38347178	22	2.6	21	79	17	64	63	1	0	34	1.04
38349696--38349731	18	1.9	19	88	5	56	38	11	8	41	1.71
38350017--38350057	21	2.0	21	95	0	73	65	4	7	21	1.37
38362179--38362238	29	2.0	31	84	12	81	31	10	6	51	1.61
38363759--38363827	31	2.2	31	78	0	75	34	8	10	46	1.69
38370860--38370891	4	8.0	4	92	0	55	25	21	28	25	1.99
38370889--38370914	4	6.5	4	100	0	52	26	0	23	50	1.50
38373457--38373500	16	2.8	16	86	6	54	77	2	6	13	1.07
38383855--38383963	55	2.0	55	94	3	193	55	7	4	32	1.48
38389285--38389320	6	6.0	6	100	0	72	33	50	0	16	1.46
38408794--38408874	12	6.3	12	68	26	51	45	0	0	54	0.99
38408799--38408874	27	2.7	27	84	6	107	47	0	0	52	1.00
38408838--38408903	30	2.2	29	78	10	71	48	1	1	48	1.20
38408799--38408905	56	1.9	56	83	7	137	49	0	0	48	1.13
38410779--38410997	23	9.4	23	84	8	257	11	21	22	44	1.84
38410758--38410999	115	2.1	116	96	1	441	11	22	21	44	1.85
38411224--38411274	24	2.1	24	100	0	102	35	3	21	39	1.72
38416861--38416891	16	1.9	16	93	0	53	74	9	6	9	1.23
38416899--38416933	10	3.3	10	85	14	52	68	17	8	5	1.35
38416899--38416940	21	2.0	22	90	4	68	66	19	7	7	1.39
38417628--38417689	27	2.5	25	80	12	65	50	0	1	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38428477--38428520	22	2.0	23	81	4	54	65	4	0	29	1.12
38429722--38429767	19	2.5	17	80	16	56	36	0	0	63	0.95
38429733--38429779	19	2.5	19	82	6	60	40	0	2	57	1.11
38430393--38430510	33	3.6	33	70	13	107	14	6	45	33	1.71
38430392--38430515	66	1.9	66	96	0	230	13	6	46	33	1.69
38434169--38434209	20	2.0	20	90	0	64	53	4	9	31	1.55
38447535--38447651	58	2.0	58	100	0	234	20	17	18	42	1.89
38456684--38456726	15	2.9	14	76	10	50	60	0	6	32	1.23
38457470--38457529	24	2.4	25	86	2	86	31	21	6	40	1.79
38460986--38461395	72	5.7	72	88	0	570	25	38	13	23	1.91
38460986--38461790	144	5.3	144	81	11	847	25	38	12	22	1.90
38461229--38461791	159	3.5	158	82	13	749	25	39	12	22	1.89
38461301--38461482	87	2.1	87	92	0	301	23	40	13	22	1.90
38461166--38461791	231	2.6	231	89	3	964	25	39	12	22	1.89
38461388--38461626	72	3.3	72	90	0	370	25	40	11	22	1.87
38461544--38461798	87	2.9	87	91	0	420	25	40	12	21	1.88
38461771--38461811	21	2.0	21	90	0	64	24	41	17	17	1.89
38466126--38466168	22	2.0	22	86	9	61	32	2	2	62	1.20
38467376--38467414	3	13.0	3	100	0	78	33	0	0	66	0.92
38473075--38473121	21	2.1	23	84	7	62	51	2	2	44	1.25
38474123--38474150	2	14.0	2	100	0	56	50	0	0	50	1.00
38488921--38488945	12	2.1	12	100	0	50	52	32	0	16	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38489292--38489334	20	2.2	20	95	0	77	44	6	6	41	1.58
38489319--38489398	39	2.1	39	100	0	160	45	5	10	40	1.60
38491503--38491565	18	3.2	20	79	18	71	42	0	1	55	1.09
38495082--38495108	6	4.5	6	100	0	54	33	0	18	48	1.49
38495607--38495649	21	2.1	20	87	12	61	18	2	4	74	1.10
38495622--38495661	17	2.3	17	91	4	62	17	5	5	72	1.21
38496855--38496949	43	2.2	43	92	1	156	32	31	16	18	1.94
38497516--38497566	21	2.4	21	96	0	93	17	27	27	27	1.98
38498220--38498607	29	13.4	30	74	12	192	35	25	2	36	1.70
38498245--38498529	30	9.8	30	75	12	150	36	24	2	36	1.68
38498284--38498559	86	3.2	88	77	11	248	36	24	2	36	1.71
38498245--38498560	59	5.4	58	74	8	232	36	24	2	36	1.69
38498284--38498599	87	3.6	86	76	11	295	36	25	2	36	1.71
38498546--38498626	28	2.8	29	81	5	85	34	22	3	39	1.72
38499052--38499102	21	2.4	21	87	6	68	23	13	19	43	1.87
38502587--38502611	12	2.1	12	100	0	50	52	32	0	16	1.44
38502956--38502998	20	2.2	20	100	0	86	44	9	6	39	1.64
38505130--38505192	18	3.2	20	79	18	71	42	0	1	55	1.09
38508691--38508717	6	4.5	6	100	0	54	33	0	18	48	1.49
38509216--38509258	21	2.1	20	87	12	61	18	2	4	74	1.10
38509231--38509270	17	2.3	17	91	4	62	17	5	5	72	1.21
38512298--38512428	63	2.1	63	97	0	244	44	14	18	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38525413--38525454	13	3.2	13	80	9	50	30	0	4	64	1.14
38526415--38526491	41	2.0	38	82	10	93	46	5	9	38	1.58
38530670--38530705	12	3.0	12	95	0	63	38	0	0	61	0.96
38536954--38537134	91	2.0	91	98	0	353	39	18	13	28	1.89
38540270--38540312	21	2.1	20	86	4	59	18	0	9	72	1.11
38540272--38540312	22	1.9	21	90	5	64	17	0	9	73	1.09
38564450--38564617	92	1.8	92	87	5	250	23	16	13	46	1.82
38564535--38564728	103	1.9	102	88	1	289	22	14	11	51	1.74
38564648--38564813	84	2.0	86	90	4	266	21	15	10	53	1.72
38564467--38565118	186	3.4	190	79	11	613	21	17	11	50	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125