genome.fa.s6.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  102  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30811794--30811887	16	6.0	16	71	7	50	55	0	0	44	0.99
30811792--30811911	32	4.0	31	69	16	83	51	0	0	48	1.00
30811769--30811939	58	2.9	58	83	9	197	52	0	1	45	1.15
30811819--30811911	15	6.3	15	68	19	52	49	0	0	50	1.00
30815037--30815115	31	2.6	31	88	7	110	53	6	2	37	1.40
30818049--30818091	19	2.1	20	83	12	52	25	0	2	72	0.97
30818398--30818424	6	4.5	6	100	0	54	18	29	18	33	1.95
30825232--30825366	62	2.2	61	88	5	200	22	17	14	45	1.85
30826216--30826260	22	2.0	22	87	8	65	51	0	2	46	1.13
30826249--30826318	30	2.3	29	83	7	86	51	2	1	44	1.25
30832218--30832383	84	2.0	84	91	0	269	23	36	4	34	1.76
30832607--30833055	228	2.0	219	89	5	686	22	37	13	26	1.91
30836968--30837033	31	2.1	31	88	0	96	42	12	16	28	1.84
30838299--30838349	16	3.1	16	75	5	57	60	9	1	27	1.39
30839186--30839217	13	2.4	14	90	10	50	59	9	31	0	1.29
30841244--30841282	20	2.0	20	85	10	53	25	15	2	56	1.52
30841521--30841626	40	2.6	39	81	12	110	18	11	6	63	1.49
30841555--30841625	20	3.6	20	80	12	85	21	9	4	64	1.40
30841725--30841818	38	2.4	38	78	7	100	24	12	6	56	1.60
30841810--30841875	20	3.3	21	81	6	75	24	21	1	53	1.55
30843156--30843195	19	2.1	19	90	0	62	70	10	0	20	1.16
30845862--30845915	20	2.7	20	72	11	56	33	9	7	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30846820--30846855	18	2.1	17	89	5	54	27	0	0	72	0.85
30862318--30862355	18	2.1	18	100	0	76	36	10	21	31	1.87
30863414--30863523	54	2.0	54	92	0	184	26	15	24	33	1.95
30864220--30864368	75	2.0	75	89	0	226	26	24	20	28	1.99
30873117--30873185	34	2.0	34	100	0	138	40	20	20	18	1.92
30878317--30878346	6	5.0	6	91	0	51	0	46	0	53	1.00
30883925--30883967	23	2.0	23	86	9	63	65	11	6	16	1.46
30883964--30884060	12	8.3	12	74	4	74	70	18	2	9	1.24
30883964--30884060	23	4.2	24	80	6	101	70	18	2	9	1.24
30885601--30885663	30	2.1	30	84	0	81	60	4	7	26	1.45
30885626--30885691	30	2.2	30	86	10	91	60	6	4	28	1.40
30886804--30886832	14	2.0	15	93	6	51	62	3	6	27	1.37
30888095--30888366	83	3.3	82	89	4	377	51	3	5	39	1.44
30888497--30888544	12	3.7	12	77	20	51	41	10	0	47	1.37
30888507--30888541	17	2.1	16	89	5	52	48	8	0	42	1.33
30888497--30888554	28	2.1	28	83	0	71	43	12	0	44	1.41
30892270--30892596	61	5.5	59	84	9	396	32	17	21	28	1.96
30892272--30892595	121	2.7	120	85	9	421	32	17	20	29	1.96
30897858--30897894	15	2.6	15	87	8	51	67	5	0	27	1.12
30898150--30898227	34	2.3	34	84	8	122	5	38	26	29	1.78
30898425--30898469	21	2.0	23	83	8	58	13	0	22	64	1.28
30898484--30898517	17	2.0	17	94	0	59	44	0	2	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30903352--30903377	13	2.0	13	100	0	52	30	7	30	30	1.85
30905010--30905079	12	5.9	12	77	3	61	70	14	4	11	1.31
30905085--30905118	17	2.0	17	100	0	68	70	17	5	5	1.28
30905075--30905177	22	4.9	21	75	14	79	66	21	6	5	1.37
30905866--30905916	24	2.2	23	86	6	75	70	15	5	7	1.30
30905871--30905915	12	3.8	12	81	0	63	66	17	6	8	1.40
30905933--30905992	21	2.9	21	84	0	75	68	13	6	11	1.39
30916186--30916261	38	2.0	37	85	10	100	42	3	10	43	1.57
30918191--30918216	5	5.2	5	100	0	52	19	0	19	61	1.35
30923347--30923375	4	7.2	4	100	0	58	51	24	0	24	1.48
30936528--30936555	3	9.3	3	100	0	56	32	32	0	35	1.58
30949843--30949978	56	2.4	56	90	1	209	26	20	13	39	1.89
30950309--30950338	12	2.4	12	94	5	51	60	0	0	40	0.97
30951529--30951646	57	2.1	58	90	4	186	47	20	0	31	1.56
30956615--30956647	2	16.5	2	100	0	66	48	0	0	51	1.00
30960144--30960212	30	2.3	29	80	14	77	50	8	2	37	1.48
30962478--30962547	27	2.5	26	80	11	77	45	4	0	50	1.21
30966917--30967000	42	2.0	42	88	4	125	32	0	19	48	1.49
30967177--30967268	37	2.7	33	71	15	87	47	14	9	28	1.75
30967392--30967427	17	2.1	17	90	10	56	77	5	0	16	0.94
30968224--30968274	4	12.8	4	100	0	102	25	0	23	50	1.49
30968309--30968375	24	2.9	23	84	4	89	29	11	11	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30968779--30968834	24	2.3	26	78	12	64	44	3	3	48	1.37
30972248--30972285	19	2.0	19	94	0	67	65	0	0	34	0.93
30976956--30976981	6	4.3	6	100	0	52	15	15	50	19	1.79
30980407--30980841	59	7.2	59	79	7	378	29	17	15	37	1.91
30980407--30980841	117	3.6	117	81	7	437	29	17	15	37	1.91
30984458--30984500	18	2.4	18	80	0	50	27	20	2	48	1.62
30987010--30987066	28	2.0	28	90	6	89	22	12	12	52	1.72
30989569--30989636	29	2.3	29	90	7	102	58	14	7	19	1.59
30989829--30989880	25	2.2	22	86	10	68	50	15	15	19	1.79
30996608--30996649	22	1.9	22	85	9	59	40	2	2	54	1.26
31004558--31004641	28	2.9	28	76	18	73	30	3	5	59	1.38
31019985--31020021	19	2.0	20	89	10	60	32	2	0	64	1.07
31019982--31020053	19	4.1	16	72	20	54	36	1	2	59	1.20
31019983--31020110	66	1.9	66	85	3	177	34	3	4	57	1.35
31021037--31021372	168	2.0	168	89	1	521	29	16	22	31	1.96
31022022--31022076	19	2.8	19	97	2	101	70	0	0	29	0.87
31024529--31024651	8	14.4	8	70	13	75	45	2	0	51	1.20
31024527--31024639	37	2.9	40	70	17	101	47	2	0	48	1.21
31024649--31025079	22	19.2	22	64	13	130	51	5	0	42	1.29
31024611--31024764	69	2.3	68	82	8	181	51	3	0	44	1.24
31024634--31025280	111	5.6	111	86	7	814	49	6	0	43	1.32
31024625--31025280	334	1.9	344	86	7	935	48	6	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31024590--31025280	223	3.0	225	85	8	865	48	6	0	44	1.33
31024966--31025281	120	2.6	122	89	3	498	45	7	0	45	1.36
31025132--31025173	10	4.2	10	80	19	52	42	0	0	57	0.99
31025130--31025338	58	3.8	55	73	17	177	46	6	0	46	1.31
31025141--31025247	50	2.2	49	83	9	130	45	7	0	45	1.37
31024970--31025344	120	3.1	118	81	7	402	46	7	0	45	1.34
31025297--31025348	20	2.6	20	90	0	77	42	0	0	57	0.98
31025304--31025346	12	3.6	12	80	0	50	41	0	0	58	0.98
31025708--31025739	16	2.0	16	93	0	55	18	18	21	40	1.91
31031348--31031390	13	3.0	14	80	13	52	18	18	23	39	1.92
31031346--31031402	28	2.1	28	83	9	73	14	21	26	38	1.91
31035099--31035124	6	4.3	6	100	0	52	30	53	0	15	1.42
31041036--31041074	19	2.1	19	85	9	53	71	7	0	20	1.10
31042497--31042531	3	11.7	3	100	0	70	0	31	0	68	0.90
31044062--31044106	20	2.2	21	84	11	58	35	6	4	53	1.47
31044388--31044473	44	2.0	44	82	15	108	40	13	2	43	1.57
31047013--31047047	10	3.5	10	92	0	52	28	0	0	71	0.86
31049321--31049355	18	1.9	18	88	0	52	42	11	11	34	1.77
31050049--31050094	16	2.8	17	77	12	51	34	4	0	60	1.16
31050096--31050139	14	3.1	14	80	6	52	40	6	0	52	1.28
31050039--31050170	31	4.3	31	76	11	128	39	5	0	55	1.23
31051383--31051564	99	1.8	98	82	3	231	30	8	10	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31058225--31058257	6	5.8	6	92	7	52	81	0	0	18	0.68
31068090--31068174	29	3.0	28	70	8	73	48	8	10	32	1.67
31070786--31070833	20	2.3	21	85	3	62	41	2	20	35	1.64
31074453--31074493	22	1.9	22	90	5	66	34	9	21	34	1.87
31077677--31077756	39	2.1	39	87	0	115	36	15	26	22	1.93
31093653--31093677	3	8.3	3	100	0	50	0	32	0	68	0.90
31093778--31093808	9	3.4	9	100	0	62	32	0	0	67	0.91
31098709--31098749	20	2.1	20	86	4	57	39	4	2	53	1.35
31104511--31104596	43	2.0	43	100	0	172	34	13	16	34	1.88
31107247--31107295	17	2.9	17	100	0	98	55	28	4	12	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125