genome.fa.s6.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  2  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429079--429158	31	2.5	31	93	2	133	42	16	15	26	1.87
430137--430180	19	2.3	19	84	7	54	75	6	0	18	1.02
433671--433705	15	2.3	15	100	0	70	45	5	14	34	1.68
439194--439218	9	2.8	9	100	0	50	32	0	0	68	0.90
450539--450654	58	2.0	58	100	0	232	37	8	20	32	1.83
455045--455100	29	2.0	28	82	10	69	60	5	3	30	1.36
456402--456532	52	2.5	52	92	0	217	30	16	21	32	1.95
469658--469719	21	3.0	20	81	9	63	66	3	3	27	1.23
474906--474948	20	2.0	21	86	8	61	62	6	6	23	1.45
483680--483717	2	19.0	2	100	0	76	50	0	0	50	1.00
485484--485635	43	3.6	43	81	4	148	30	23	18	26	1.98
485484--485662	43	4.2	43	77	9	134	30	25	17	27	1.97
491220--491262	18	2.4	18	96	0	77	39	18	13	27	1.89
491719--491754	8	4.2	8	86	13	54	61	0	0	38	0.96
491706--491768	18	3.2	20	86	13	94	55	0	1	42	1.09
491788--491852	4	16.0	4	74	6	51	50	0	4	44	1.22
491799--492006	34	5.7	34	72	15	139	42	0	10	46	1.41
491834--492008	80	2.2	80	89	0	260	43	0	10	45	1.42
491984--492011	8	3.5	8	100	0	56	64	0	0	35	0.94
492003--492027	13	1.9	13	100	0	50	48	0	4	48	1.20
492043--492072	4	7.5	4	92	0	51	50	0	0	50	1.00
492052--492277	34	6.5	34	69	11	127	43	0	10	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492174--492445	84	3.2	84	98	0	526	45	0	9	44	1.37
492258--492408	8	18.1	8	73	8	68	47	0	8	44	1.34
492221--492324	50	2.1	50	90	0	163	46	0	8	45	1.34
492256--492380	4	31.5	4	73	7	60	46	0	7	46	1.30
492271--492364	34	2.8	34	88	0	134	43	0	9	46	1.36
492305--492408	50	2.1	50	90	0	163	46	0	8	45	1.34
492355--492560	34	6.3	34	73	7	142	40	0	11	47	1.43
492319--492560	128	1.9	130	90	5	391	40	0	11	47	1.43
492730--492756	10	2.7	10	100	0	54	40	0	11	48	1.39
494349--494392	15	2.9	15	86	0	61	38	2	25	34	1.68
494469--494574	40	2.6	39	86	5	149	16	32	20	31	1.94
494469--494587	40	3.0	39	85	7	141	14	31	21	32	1.93
517790--517825	3	11.7	3	94	5	63	0	30	0	69	0.89
517789--517825	19	1.9	19	100	0	74	0	29	0	70	0.88
517793--517826	16	2.1	16	100	0	68	0	29	0	70	0.87
524653--524697	2	22.5	2	95	0	81	48	0	0	51	1.00
525074--525102	14	2.0	15	93	6	51	44	6	0	48	1.29
532233--532298	29	2.2	30	81	2	80	43	9	6	40	1.61
536791--536819	1	29.0	1	100	0	58	100	0	0	0	0.00
537312--537353	19	2.2	19	83	8	50	42	4	0	52	1.22
541601--541659	29	2.0	30	86	3	84	28	6	16	47	1.72
541606--541668	29	2.1	29	82	8	74	31	9	12	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551499--551536	20	1.9	20	84	10	51	28	0	13	57	1.36
554068--554111	22	2.0	23	90	4	72	31	0	0	68	0.90
554058--554131	29	2.6	28	82	6	94	36	0	1	62	1.04
558511--558535	2	12.5	2	100	0	50	48	0	0	52	1.00
572043--572085	18	2.4	18	88	7	61	53	0	0	46	1.00
578623--578661	19	2.1	19	95	0	69	35	23	0	41	1.55
581478--581544	6	11.2	6	78	12	75	44	0	2	52	1.16
581454--581503	27	1.9	25	84	15	66	32	2	6	60	1.32
581495--581543	17	2.6	20	84	12	68	48	0	2	48	1.12
583160--583484	161	2.0	163	86	2	458	25	15	12	46	1.81
583613--583708	30	3.2	30	68	8	88	35	23	7	33	1.83
583584--584128	178	3.1	176	86	6	746	32	27	4	35	1.78
583584--584128	117	4.6	117	86	4	709	32	27	4	35	1.78
583584--584128	59	9.2	59	87	3	711	32	27	4	35	1.78
595994--596863	69	12.5	69	89	3	1185	32	16	21	29	1.96
596145--596608	31	13.4	36	64	22	192	32	15	22	30	1.94
596687--596822	39	3.6	39	85	2	170	30	19	20	29	1.97
597155--597221	6	11.2	6	78	12	75	44	0	2	52	1.16
597131--597180	27	1.9	25	84	15	66	32	2	6	60	1.32
597172--597220	17	2.6	20	84	12	68	48	0	2	48	1.12
598830--599143	163	1.9	162	87	3	461	24	15	13	46	1.82
599253--599854	59	10.2	59	88	1	789	30	26	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599253--599861	177	3.4	177	89	2	875	30	26	6	36	1.82
604654--604728	31	2.4	31	79	0	87	32	9	12	46	1.73
606345--606379	18	1.9	18	100	0	70	68	0	0	31	0.90
606333--606383	26	1.9	27	84	4	68	62	0	0	37	0.95
615012--615069	31	1.9	31	89	3	91	37	15	18	27	1.92
617344--617398	20	2.8	19	75	5	65	20	21	29	29	1.98
617348--617410	19	3.3	19	77	2	72	20	19	26	33	1.96
630815--630882	31	2.3	30	87	5	93	51	8	2	36	1.48
632080--632530	156	2.9	156	89	0	679	33	14	16	34	1.90
644054--644085	7	4.7	7	92	7	57	87	12	0	0	0.54
644054--644085	13	2.4	14	94	5	57	87	12	0	0	0.54
644869--644926	11	5.5	11	78	15	59	60	5	0	34	1.19
645081--645119	21	1.9	20	89	5	60	56	0	5	38	1.22
648690--649249	104	5.4	104	85	4	738	39	26	6	28	1.80
648541--649249	207	3.5	204	86	5	890	39	26	5	28	1.79
652709--652777	31	2.2	31	84	0	84	26	10	18	44	1.81
652719--652783	31	2.1	31	85	0	85	26	9	16	47	1.77
671545--671651	55	2.0	54	94	1	187	13	20	27	39	1.89
674775--674807	6	5.5	6	92	0	57	15	3	33	48	1.60
676270--676355	44	2.0	44	95	0	154	38	17	9	34	1.82
682164--682237	37	2.0	37	100	0	148	32	21	18	27	1.97
684656--684735	18	4.4	18	77	3	72	6	46	0	47	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684681--684733	15	3.5	15	82	7	54	9	43	0	47	1.36
684638--684703	3	22.0	3	84	6	53	1	42	0	56	1.08
687380--687414	17	2.1	17	89	10	54	37	2	0	60	1.12
695779--696431	100	6.5	100	84	1	790	37	23	11	27	1.89
695791--696431	200	3.2	200	88	1	892	38	23	11	26	1.89
698118--698149	5	6.4	5	100	0	64	37	0	0	62	0.95
699563--699593	7	4.4	7	100	0	62	45	0	41	12	1.42
706463--706497	16	2.2	16	90	5	54	68	5	0	25	1.11
724705--724745	19	2.1	20	86	4	57	56	12	12	19	1.67
728564--728590	4	6.8	4	100	0	54	25	0	22	51	1.48
731651--731723	28	2.6	28	82	8	78	36	9	26	27	1.87
731707--731931	30	7.6	29	72	13	133	36	2	26	34	1.69
731707--731901	59	3.3	58	81	11	229	36	2	26	34	1.68
731738--732005	30	9.2	28	71	11	137	36	3	27	33	1.73
731675--732013	29	11.6	29	68	13	119	35	4	27	33	1.76
733076--733146	3	23.0	3	75	11	54	42	1	0	56	1.08
733076--733146	10	6.2	12	78	15	71	42	1	0	56	1.08
733080--733146	16	4.5	15	76	12	59	43	1	0	55	1.09
733821--733914	17	5.5	17	78	2	91	57	6	1	35	1.31
733826--733913	34	2.6	34	78	1	106	60	5	1	32	1.28
737872--737901	13	2.2	14	94	5	53	76	10	0	13	1.01
739685--739709	7	3.6	7	100	0	50	12	0	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747832--747914	31	2.7	31	78	0	85	44	10	9	34	1.72
754226--754250	13	1.9	13	100	0	50	36	8	0	56	1.29
754686--755187	151	3.3	150	85	4	643	25	9	25	38	1.87
757630--757668	18	2.2	18	85	0	51	28	5	2	64	1.28
763224--763253	14	2.1	14	93	0	51	36	0	23	40	1.55
765708--765737	14	2.1	14	93	0	51	36	0	23	40	1.55
772022--772154	70	1.9	67	87	4	194	35	11	9	43	1.74
772677--772737	29	2.1	30	81	9	72	42	0	1	55	1.09
776811--776840	14	2.1	14	93	0	51	36	0	23	40	1.55
779293--779322	14	2.1	14	93	0	51	36	0	23	40	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125