genome.fa.s6.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  54  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16654354--16654385	14	2.3	14	100	0	64	18	37	0	43	1.51
16658438--16658476	20	1.9	21	89	5	62	33	0	30	35	1.58
16658436--16658491	20	2.7	20	78	15	60	35	0	33	30	1.58
16660579--16660621	21	2.0	21	95	0	77	32	2	4	60	1.30
16660719--16660764	23	2.0	24	87	12	69	67	2	0	30	1.03
16663981--16664060	21	3.7	21	83	3	97	31	1	21	46	1.59
16671010--16671049	4	10.2	4	94	5	73	50	27	0	22	1.50
16672995--16673113	20	5.9	20	72	26	83	50	0	1	47	1.11
16673004--16673105	30	3.7	29	80	18	137	50	0	0	49	1.07
16673034--16673113	11	7.8	11	79	18	77	51	0	1	47	1.08
16672995--16673112	51	2.3	51	92	4	195	50	0	1	47	1.11
16673543--16673760	80	3.0	70	75	17	253	24	14	23	37	1.93
16673455--16673760	149	2.0	152	94	4	546	25	14	23	36	1.93
16673659--16673851	87	2.2	87	99	0	377	24	13	24	37	1.92
16674740--16674776	15	2.4	16	90	4	58	51	32	2	13	1.55
16682033--16682069	15	2.4	16	90	4	58	51	32	2	13	1.55
16683176--16683208	15	2.1	16	88	5	50	36	9	0	54	1.32
16685734--16685788	26	2.1	26	100	0	110	40	3	18	38	1.68
16686867--16686943	36	2.1	36	87	0	109	29	7	24	37	1.84
16689201--16689271	31	2.3	31	100	0	142	42	7	18	32	1.77
16692596--16692699	22	5.2	20	78	10	97	8	8	19	63	1.48
16692689--16692804	12	10.3	12	73	17	81	10	4	15	69	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16692687--16692799	21	5.2	21	72	16	86	9	4	16	69	1.33
16693729--16693756	3	9.3	3	100	0	56	67	32	0	0	0.91
16694651--16694675	11	2.3	11	100	0	50	16	8	32	44	1.76
16712889--16712949	18	3.4	18	74	0	59	45	19	4	29	1.71
16713586--16713627	20	2.1	20	86	0	57	21	4	9	64	1.42
16722013--16722041	15	1.9	15	100	0	58	44	13	27	13	1.82
16723631--16723689	17	3.5	17	76	0	55	20	16	13	49	1.80
16729408--16729678	135	2.0	136	96	0	499	34	14	19	31	1.92
16739078--16739125	24	1.9	26	91	8	82	39	37	4	18	1.70
16739971--16740000	7	4.3	7	100	0	60	60	0	40	0	0.97
16744397--16744513	18	6.0	18	69	17	65	60	4	1	33	1.26
16747497--16747615	27	4.5	27	79	7	111	33	21	15	29	1.94
16747487--16747615	54	2.4	52	75	7	134	34	20	14	29	1.93
16747772--16747891	26	4.6	25	83	6	114	30	23	20	25	1.98
16747798--16747945	27	5.6	25	83	6	125	33	22	17	25	1.96
16747815--16747978	27	6.1	27	84	3	163	36	22	17	23	1.94
16751866--16751917	21	2.5	21	84	6	70	30	28	13	26	1.94
16752700--16752941	52	4.7	52	90	0	367	33	22	14	30	1.93
16755448--16755477	15	1.9	16	93	6	53	36	16	0	46	1.47
16756502--16756795	52	5.7	52	92	0	480	33	23	13	29	1.93
16758542--16758592	26	2.0	26	84	0	66	27	25	21	25	1.99
16758572--16758688	25	4.6	25	81	3	126	33	25	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16758572--16758850	27	10.7	27	77	9	208	35	22	17	24	1.95
16768694--16768726	11	2.8	12	86	13	50	45	6	0	48	1.27
16768703--16768729	11	2.5	11	100	0	54	40	11	0	48	1.39
16770633--16770700	24	2.8	24	79	2	73	50	1	32	16	1.54
16780244--16780305	32	1.9	32	93	0	106	40	22	8	29	1.82
16781482--16781588	54	2.0	54	88	0	160	36	14	8	40	1.77
16783765--16783810	22	2.1	21	84	4	56	52	2	0	45	1.13
16793262--16793350	28	3.2	27	67	20	76	22	22	24	30	1.99
16793254--16793761	55	9.2	55	85	1	597	25	19	23	31	1.98
16793290--16793377	27	3.2	27	66	20	74	26	20	23	29	1.99
16793254--16793761	219	2.3	219	82	4	630	25	19	23	31	1.98
16793619--16793706	27	3.2	27	65	15	72	27	19	23	29	1.98
16793553--16793794	55	4.4	56	80	6	215	26	18	23	31	1.97
16797002--16797068	33	2.0	34	85	2	91	34	2	14	47	1.60
16801838--16801905	31	2.2	31	84	5	84	50	10	19	20	1.76
16801887--16801926	16	2.5	15	88	11	62	45	5	17	32	1.70
16805091--16805170	37	2.1	38	83	2	99	32	16	12	38	1.86
16806000--16806030	16	1.9	16	93	0	53	22	16	0	61	1.34
16809334--16809435	37	2.8	37	92	0	159	24	27	18	29	1.98
16809481--16809567	38	2.3	38	82	5	115	28	26	13	31	1.94
16809559--16809637	26	3.0	27	83	7	99	32	21	17	27	1.96
16814351--16814441	47	1.9	47	97	0	173	31	9	19	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16821316--16821357	16	2.6	16	85	11	50	71	2	2	23	1.10
16822518--16822639	30	4.1	29	80	8	147	40	24	3	31	1.71
16834321--16834447	50	2.5	50	85	2	184	37	19	22	19	1.94
16834504--16834800	40	7.3	40	73	11	151	38	23	13	24	1.91
16834504--16834801	80	3.7	80	75	9	253	37	24	13	24	1.91
16834529--16834763	124	1.9	125	86	2	339	37	23	14	24	1.92
16836513--16836697	30	6.2	29	84	6	192	43	17	0	37	1.54
16836640--16836694	16	3.6	16	68	9	51	47	9	0	43	1.35
16838312--16838348	19	1.9	19	88	0	56	5	8	10	75	1.17
16838306--16838357	24	2.2	24	82	6	61	7	7	11	73	1.26
16839479--16839552	30	2.4	31	86	6	98	56	2	0	40	1.13
16839507--16839576	30	2.3	30	83	9	81	62	1	0	35	1.04
16843017--16843094	31	2.5	31	100	0	156	20	34	29	15	1.93
16846809--16846931	42	2.9	42	85	2	158	43	17	11	27	1.83
16851388--16851442	26	2.2	24	80	6	65	21	5	1	70	1.16
16851373--16851425	20	2.7	20	76	5	54	16	3	3	75	1.10
16851373--16851432	14	4.4	14	74	16	54	18	3	3	75	1.09
16856300--16856335	17	2.2	17	90	5	56	63	8	2	25	1.36
16856334--16856408	3	26.7	3	74	17	54	68	4	2	25	1.21
16856333--16856436	17	6.6	16	69	16	65	70	2	3	23	1.17
16856330--16856430	45	2.2	45	80	5	114	70	2	3	22	1.18
16858088--16858155	20	3.4	19	82	6	73	23	2	0	73	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16858101--16858198	3	34.0	3	73	11	80	25	3	1	70	1.08
16858084--16858165	11	7.7	10	73	20	60	23	3	0	73	0.99
16867351--16867589	118	2.0	116	89	3	363	45	15	8	30	1.76
16875536--16875615	26	3.1	26	81	0	88	25	16	23	35	1.95
16875980--16876013	16	2.1	16	100	0	68	23	17	5	52	1.66
16877256--16877468	42	5.2	40	69	13	121	25	11	25	37	1.89
16877253--16877849	81	7.4	81	76	4	407	28	12	24	34	1.92
16877533--16877659	39	3.2	39	74	10	114	32	15	24	27	1.96
16877253--16877845	243	2.4	241	80	3	600	28	12	24	34	1.92
16880052--16880106	21	2.7	19	80	11	56	1	32	0	65	1.03
16883934--16883969	18	2.0	18	88	0	54	25	2	30	41	1.69
16888031--16888074	23	2.0	22	86	4	61	38	2	15	43	1.60
16901392--16901438	22	2.1	23	88	4	69	36	4	2	57	1.30
16901402--16901446	23	2.0	22	86	4	63	42	4	4	48	1.43
16906345--16906400	21	2.7	21	83	10	78	53	10	8	26	1.65
16913097--16913300	95	2.1	95	91	0	327	35	28	11	24	1.90
16913827--16913976	44	3.5	44	72	9	164	22	24	10	42	1.85
16913877--16914017	41	3.4	41	76	5	174	21	29	10	39	1.87
16913828--16914018	85	2.2	85	96	0	346	22	26	10	40	1.86
16930054--16930105	27	2.0	26	84	3	68	17	0	15	67	1.24
16931981--16932030	24	2.1	24	84	0	64	24	30	32	14	1.94
16931981--16932026	18	2.6	18	78	0	56	21	32	32	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16932097--16932157	28	2.2	28	85	2	79	22	11	32	32	1.90
16932140--16932183	22	2.0	22	90	0	70	31	13	27	27	1.94
16932546--16932617	28	2.6	27	72	8	74	36	4	8	51	1.51
16932585--16932664	26	3.1	26	82	10	101	31	1	7	60	1.33
16945024--16945101	30	2.7	29	90	7	115	21	19	39	19	1.92
16949004--16949047	18	2.4	18	84	3	52	40	6	6	45	1.57
16950291--16950316	13	2.0	13	100	0	52	46	0	0	53	1.00
16951247--16951317	18	3.8	18	74	10	63	47	14	4	33	1.63
16952249--16952278	12	2.5	12	88	0	51	40	50	10	0	1.36
16956605--16956666	18	3.4	18	72	16	56	22	27	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125