genome.fa.s6.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  123  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38931576--38931637	2	32.0	2	87	6	92	48	1	0	50	1.10
38931873--38931925	27	2.0	27	88	7	81	22	5	7	64	1.41
38931877--38931935	26	2.2	26	79	8	66	27	5	6	61	1.43
38932252--38932341	46	2.0	46	100	0	180	45	4	10	40	1.58
38932986--38933012	2	13.5	2	100	0	54	51	0	0	48	1.00
38937792--38937845	23	2.4	21	76	11	54	40	1	0	57	1.09
38941641--38941690	11	4.5	11	78	14	50	40	2	2	56	1.22
38942514--38942558	22	2.1	21	91	4	72	73	0	0	26	0.84
38942512--38942584	29	2.5	29	77	6	85	65	1	0	32	1.01
38943246--38943282	7	5.3	7	90	0	56	43	5	0	51	1.24
38946350--38946392	16	3.0	14	81	15	52	48	0	0	51	1.00
38947149--38947209	21	2.8	20	76	14	50	45	1	1	50	1.21
38948459--38948503	24	1.9	23	81	4	54	37	6	6	48	1.56
38953117--38953180	32	2.0	32	96	0	119	45	18	14	21	1.85
38956572--38956639	31	2.2	31	89	0	100	42	16	2	38	1.63
38957534--38958176	161	4.0	160	82	3	729	31	15	21	31	1.94
38957534--38958172	321	2.0	321	83	2	800	31	15	21	31	1.94
38969309--38969358	22	2.3	21	82	3	55	34	4	4	58	1.36
38972322--38972365	19	2.2	20	88	11	65	36	0	0	63	0.95
38972322--38972370	10	5.0	10	77	20	50	40	0	0	59	0.98
38976157--38976195	19	2.0	20	85	5	53	20	5	2	71	1.17
38976157--38976195	20	2.0	19	85	14	53	20	5	2	71	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38981605--38981652	2	24.0	2	100	0	96	50	0	0	50	1.00
38983601--38984052	227	2.0	216	84	7	568	41	18	7	33	1.78
38983601--38984241	201	3.0	215	77	13	528	41	18	7	32	1.78
38988746--38988799	23	2.3	23	90	0	81	11	25	20	42	1.85
38988766--38988864	23	4.4	22	82	7	101	12	21	26	40	1.88
38989790--38989979	10	20.0	9	70	15	93	34	3	1	60	1.22
38989789--38989863	21	3.8	20	75	10	64	28	5	0	66	1.13
38989818--38989871	21	2.5	22	82	8	67	27	5	1	64	1.26
38989903--38989979	8	8.3	9	75	15	61	37	1	1	59	1.14
38989903--38989963	18	3.2	18	74	17	61	36	1	1	60	1.16
38989927--38989979	26	2.0	25	85	10	70	39	1	1	56	1.21
38989907--38990001	47	2.0	48	84	12	124	35	2	3	58	1.25
38992637--38992734	47	2.1	48	88	3	146	47	3	4	44	1.37
38993760--38993789	15	2.0	15	100	0	60	33	6	0	60	1.23
39000763--39000789	2	13.5	2	100	0	54	51	0	48	0	1.00
39008254--39008311	22	2.6	22	75	10	55	32	1	10	55	1.44
39008269--39008309	20	2.0	21	85	9	57	34	0	12	53	1.38
39009034--39009083	21	2.4	21	100	0	100	42	18	8	32	1.79
39014783--39014853	30	2.4	30	80	4	81	22	11	16	49	1.78
39017958--39018108	42	3.6	42	81	1	178	29	23	31	16	1.96
39018034--39018178	75	1.9	75	85	2	202	28	25	28	17	1.98
39018110--39018199	42	2.1	42	81	0	99	27	30	23	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39017995--39018207	117	1.8	117	81	4	268	28	25	27	18	1.98
39027901--39027955	18	2.9	19	71	15	51	49	7	1	41	1.41
39038981--39039012	13	2.4	14	94	5	57	84	0	0	15	0.63
39040769--39041058	141	2.1	141	92	0	481	28	26	22	22	1.99
39050030--39050072	18	2.3	19	80	11	54	65	2	2	30	1.18
39053635--39053747	56	2.0	56	100	0	226	35	10	3	50	1.54
39054808--39054896	31	2.9	31	84	3	108	35	4	5	53	1.45
39055722--39055765	21	2.1	21	100	0	88	65	4	11	18	1.40
39056276--39056302	2	13.5	2	100	0	54	51	0	48	0	1.00
39057171--39057239	31	2.2	31	86	0	93	47	10	10	31	1.70
39059079--39059119	6	7.0	6	94	5	75	17	48	34	0	1.47
39059081--39059116	11	3.2	11	92	7	63	16	50	33	0	1.46
39059079--39059119	17	2.3	18	95	4	75	17	48	34	0	1.47
39078258--39078287	15	1.9	16	93	6	53	0	3	13	83	0.77
39082582--39082616	14	2.6	14	95	4	63	25	0	0	74	0.82
39082599--39082635	19	1.9	19	88	0	56	37	0	2	59	1.12
39095769--39095809	13	3.1	14	77	22	52	53	0	4	41	1.22
39101128--39101166	19	2.0	20	85	5	53	35	15	5	43	1.69
39103766--39103812	25	2.0	24	87	8	69	31	6	4	57	1.43
39103829--39103887	16	3.9	15	77	16	52	37	1	1	59	1.18
39103780--39103952	86	2.0	86	100	0	346	38	4	2	54	1.34
39103797--39103970	86	2.1	86	91	3	228	38	5	2	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39108339--39108368	16	1.9	15	93	6	51	33	3	0	63	1.11
39109371--39109406	18	1.9	19	94	5	65	33	0	0	66	0.92
39109371--39109406	19	1.9	18	88	5	54	33	0	0	66	0.92
39110197--39110253	21	2.9	19	82	7	62	57	3	1	36	1.26
39110197--39110262	19	3.3	20	79	8	73	56	4	1	37	1.29
39111044--39111111	31	2.2	32	87	10	97	39	13	13	33	1.83
39111406--39111454	21	2.3	21	92	0	80	30	24	16	28	1.96
39113138--39113185	22	2.2	22	82	14	55	62	2	0	35	1.07
39118610--39118646	2	18.5	2	100	0	74	51	0	0	48	1.00
39118646--39118719	2	37.0	2	100	0	148	50	0	50	0	1.00
39120131--39120208	33	2.3	34	82	10	90	34	2	1	61	1.18
39120163--39120271	17	6.4	17	71	18	84	33	2	0	63	1.15
39120151--39120205	16	3.4	15	78	14	56	32	3	0	63	1.12
39120148--39120290	34	4.3	34	73	15	113	33	3	1	61	1.21
39120168--39120218	23	2.3	22	79	3	57	35	3	0	60	1.15
39122597--39122631	17	2.1	16	89	5	52	82	5	8	2	0.91
39129799--39129835	16	2.2	18	90	9	60	45	0	0	54	1.00
39134641--39134691	27	1.9	27	84	4	68	52	17	13	15	1.74
39136975--39137056	29	2.8	30	73	3	94	25	13	8	52	1.68
39139446--39139484	18	2.1	19	85	4	53	20	0	5	74	1.01
39139489--39139540	26	2.0	26	85	7	70	30	3	1	63	1.23
39139523--39139669	78	1.9	78	90	2	235	48	4	2	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39139526--39139701	78	2.3	75	82	7	217	49	3	2	44	1.31
39142045--39142089	7	6.3	7	97	2	81	0	13	55	31	1.38
39143142--39143171	2	15.0	2	100	0	60	50	0	50	0	1.00
39149861--39149906	22	2.1	22	88	4	67	63	0	4	32	1.14
39149942--39150054	56	2.0	57	83	6	142	45	10	11	32	1.75
39156540--39156619	32	2.6	30	82	9	81	51	2	13	32	1.55
39156865--39156919	29	1.9	29	96	3	103	45	3	7	43	1.49
39156839--39156922	28	3.1	28	83	10	102	47	5	4	41	1.49
39160122--39160334	102	2.1	102	83	1	266	33	18	22	26	1.96
39161757--39161928	56	2.9	58	86	5	222	29	10	13	45	1.77
39162174--39162312	67	2.1	67	95	2	253	28	10	7	53	1.62
39173213--39173249	6	6.2	6	93	0	65	64	2	32	0	1.07
39173289--39173381	32	2.8	31	91	8	141	43	3	7	46	1.48
39175419--39175602	57	3.1	57	74	13	185	28	19	17	34	1.95
39175618--39175705	42	2.0	45	84	6	119	27	15	13	43	1.85
39175559--39175768	104	2.0	104	86	7	293	26	19	16	37	1.93
39175664--39175782	62	2.0	59	86	5	166	26	22	15	34	1.95
39179453--39179500	12	3.7	12	77	20	51	47	0	10	41	1.37
39179709--39179865	45	3.6	44	65	22	107	37	5	5	52	1.46
39179772--39179902	38	3.3	37	66	20	93	39	4	3	52	1.37
39179631--39179906	83	3.3	82	90	4	394	39	6	3	50	1.46
39180070--39180109	10	4.0	10	80	0	53	12	35	27	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39180068--39180108	20	2.0	20	90	0	64	14	31	26	26	1.95
39181832--39181865	12	2.8	12	90	0	50	41	41	14	2	1.61
39181931--39182440	61	8.5	60	77	11	419	35	15	19	29	1.93
39181931--39182477	123	4.6	120	75	13	447	34	16	20	28	1.94
39182508--39182541	17	1.9	18	94	5	61	55	5	5	32	1.48
39189585--39189650	29	2.2	31	89	5	100	25	12	18	43	1.84
39190994--39191038	2	23.5	2	84	8	58	51	2	0	46	1.13
39197774--39197812	6	6.5	6	100	0	78	17	15	15	51	1.77
39197767--39197812	18	2.6	18	92	0	65	21	13	15	50	1.78
39213505--39213792	82	3.4	82	76	12	280	22	8	19	49	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125