genome.fa.s6.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  115  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35561815--35561886	25	2.9	24	67	20	58	62	2	2	31	1.24
35562918--35562959	22	1.9	22	85	9	59	21	0	14	64	1.29
35569243--35569267	13	1.9	13	100	0	50	68	0	8	24	1.16
35574617--35574664	3	16.0	3	100	0	96	66	0	0	33	0.92
35579771--35579847	32	2.4	33	77	4	84	25	5	6	62	1.41
35590873--35590910	17	2.3	17	90	4	60	28	5	0	65	1.14
35590896--35590942	25	1.9	25	91	4	78	51	0	2	46	1.13
35591342--35591371	1	30.0	1	100	0	60	0	100	0	0	0.00
35592888--35592933	22	2.2	21	84	7	58	67	2	0	30	1.03
35592887--35592941	21	2.6	22	80	8	62	61	3	0	34	1.13
35594051--35594164	58	1.9	59	82	1	140	49	18	7	24	1.74
35597582--35597761	23	7.8	23	86	1	236	40	18	11	29	1.85
35597856--35597914	12	5.0	12	86	10	77	42	16	16	23	1.89
35601080--35601117	18	2.1	18	100	0	76	26	0	15	57	1.38
35607680--35607705	2	13.0	2	100	0	52	50	0	0	50	1.00
35608115--35608143	4	7.5	4	92	7	51	27	48	24	0	1.51
35609735--35609774	20	2.0	20	100	0	80	25	25	15	35	1.94
35610347--35610409	13	5.0	13	77	14	78	41	3	0	55	1.16
35620742--35620777	14	2.6	14	90	0	54	58	5	2	33	1.36
35627286--35627317	16	2.0	16	93	0	55	40	25	15	18	1.90
35627366--35627485	43	2.8	43	84	0	150	21	29	20	28	1.98
35627545--35627577	15	2.2	15	94	0	57	48	33	0	18	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35639288--35639342	28	1.9	29	85	10	78	7	21	0	70	1.11
35641029--35641054	5	5.2	5	100	0	52	23	19	0	57	1.40
35644177--35644226	18	2.6	18	84	9	64	68	2	6	24	1.23
35644189--35644254	9	7.3	9	77	5	71	65	1	3	30	1.17
35644189--35644265	28	2.9	27	81	11	88	63	2	3	29	1.25
35646090--35646170	40	2.0	41	85	7	112	51	3	0	44	1.19
35646809--35647239	214	2.0	214	99	0	844	38	19	9	31	1.84
35649663--35649692	15	2.0	15	93	0	51	66	3	0	30	1.07
35650370--35650417	19	2.6	18	81	12	53	58	2	0	39	1.10
35657253--35657286	17	1.9	18	88	5	52	55	5	11	26	1.58
35657315--35657371	22	2.7	20	83	10	60	35	1	1	61	1.17
35663938--35663972	18	1.9	18	88	0	52	11	31	22	34	1.90
35668967--35669009	24	1.9	24	86	13	65	60	4	6	27	1.43
35670736--35670806	17	4.2	17	92	0	106	36	0	8	54	1.31
35670751--35670816	11	5.9	11	77	10	55	42	0	6	51	1.26
35670736--35670790	6	9.7	6	76	11	53	34	0	9	56	1.31
35670747--35670807	6	10.7	6	79	10	65	40	0	6	52	1.27
35672372--35672487	29	4.0	26	70	25	65	33	29	1	35	1.68
35672386--35672604	59	3.7	57	78	11	228	32	27	4	35	1.77
35676809--35676857	16	3.3	15	73	26	50	36	0	4	59	1.17
35677029--35677097	25	2.7	25	90	4	102	43	2	0	53	1.15
35678772--35678796	10	2.5	10	100	0	50	56	8	0	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35688238--35688275	1	38.0	1	100	0	76	0	0	100	0	0.00
35696174--35696285	59	1.9	57	83	7	145	53	11	10	24	1.68
35699116--35699148	2	17.0	2	93	6	59	51	0	0	48	1.00
35703463--35703514	3	17.3	3	83	0	68	5	32	1	59	1.32
35707334--35707376	22	2.0	22	85	0	59	37	6	23	32	1.82
35707637--35707662	12	2.2	12	100	0	52	38	38	15	7	1.76
35714992--35715017	5	5.2	5	100	0	52	61	0	0	38	0.96
35715034--35715058	6	4.2	6	100	0	50	16	0	52	32	1.44
35719486--35719573	41	2.1	42	97	2	169	46	20	7	25	1.77
35727343--35727367	8	3.1	8	100	0	50	12	0	40	48	1.40
35728055--35728096	12	3.3	12	76	23	50	64	2	0	33	1.07
35764565--35764590	5	5.2	5	100	0	52	23	19	19	38	1.93
35770302--35770360	20	2.9	19	75	9	64	18	10	16	54	1.70
35775504--35775535	13	2.5	13	94	0	55	34	15	12	37	1.85
35782956--35783000	20	2.2	21	88	4	65	53	4	4	37	1.41
35784061--35784114	29	2.0	29	85	10	78	53	1	5	38	1.35
35785611--35785651	20	2.0	20	85	4	55	17	12	2	68	1.31
35786327--35786404	39	2.0	38	83	11	97	48	2	1	47	1.23
35792803--35792839	2	18.5	2	100	0	74	48	0	0	51	1.00
35793767--35793823	28	2.0	28	86	6	78	63	3	5	28	1.33
35798543--35798591	21	2.4	21	79	3	55	44	0	6	48	1.27
35800984--35801016	17	1.9	17	93	0	57	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35824768--35824820	19	2.7	20	82	11	65	67	1	7	22	1.25
35824872--35824934	23	2.7	23	83	9	74	41	1	4	52	1.32
35827433--35827799	186	2.0	185	82	6	447	35	16	14	33	1.89
35829207--35829231	2	12.5	2	100	0	50	0	48	0	52	1.00
35829719--35829756	19	2.0	19	89	0	58	28	13	2	55	1.51
35832019--35832130	60	1.9	59	83	1	143	58	10	4	25	1.50
35832104--35832179	32	2.4	33	84	8	95	63	3	5	27	1.34
35832022--35832200	91	2.0	88	81	10	204	61	7	4	26	1.43
35833046--35833112	16	4.4	16	71	15	54	46	5	1	46	1.36
35833094--35833139	22	2.0	23	87	4	67	52	0	0	47	1.00
35853654--35853683	13	2.4	13	94	5	53	86	0	0	13	0.57
35855429--35855495	31	2.2	31	100	0	134	58	0	2	38	1.14
35858528--35858566	20	2.0	20	84	0	51	25	20	7	46	1.77
35863560--35864017	223	2.0	224	93	2	787	42	18	12	25	1.87
35870425--35870467	18	2.4	18	80	7	52	48	2	0	48	1.14
35871028--35871086	28	2.1	29	83	3	75	32	1	11	54	1.47
35879123--35879179	29	1.9	30	86	10	82	68	1	3	26	1.15
35894768--35894797	3	10.3	3	92	7	53	70	0	30	0	0.88
35898086--35898162	29	2.6	30	74	12	77	45	1	2	50	1.23
35898151--35898189	15	2.4	17	83	8	55	64	0	0	35	0.94
35900280--35900332	23	2.3	23	70	3	54	54	3	1	39	1.29
35908063--35908097	16	2.1	18	89	10	56	60	8	0	31	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35908817--35908885	31	2.2	31	94	0	120	21	5	5	66	1.34
35917876--35917900	2	12.5	2	100	0	50	52	0	0	48	1.00
35918320--35919207	245	3.6	245	98	0	1697	38	13	9	38	1.77
35920027--35920065	19	2.0	20	85	5	53	53	0	0	46	1.00
35950160--35950204	6	7.5	6	89	0	54	51	0	24	24	1.49
35966411--35966465	24	2.4	22	75	9	56	45	0	1	52	1.11
35969793--35969852	30	2.0	28	84	15	77	65	5	0	30	1.14
35974397--35974455	30	2.0	30	89	0	91	15	32	15	37	1.88
35979561--35979629	30	2.3	31	82	7	79	62	0	0	37	0.96
35979657--35979738	11	7.6	11	73	10	62	68	3	0	28	1.06
35979704--35979753	21	2.4	21	83	9	59	76	2	2	20	0.99
35979760--35979844	12	7.2	12	68	7	57	71	10	3	14	1.26
35979760--35979840	35	2.3	35	82	6	101	71	11	3	13	1.26
35979849--35979905	20	2.8	20	83	2	69	68	14	7	10	1.38
35981253--35981290	18	2.2	18	90	4	60	47	2	0	50	1.15
35982808--35982840	3	11.7	3	93	6	52	27	0	0	72	0.85
35990575--35990852	90	3.1	89	89	2	412	24	25	24	25	2.00
35991979--35992456	51	9.4	51	87	1	627	27	31	14	26	1.95
35993319--35993352	14	2.3	15	85	5	52	17	0	5	76	0.98
35993510--35993621	47	2.3	49	84	7	138	33	3	7	56	1.44
35997166--35997207	16	2.6	17	81	11	52	9	2	19	69	1.28
35997205--35997244	18	2.2	18	95	0	71	17	20	12	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35998072--35998111	20	2.0	21	85	5	55	50	0	15	35	1.44
36004282--36004341	31	2.0	30	86	3	84	38	1	11	48	1.50
36013642--36013717	26	2.8	25	75	16	71	64	0	0	35	0.94
36013672--36013723	22	2.4	21	81	9	61	65	0	0	34	0.93
36013816--36013856	16	2.6	16	92	0	64	36	39	9	14	1.79
36018526--36018564	2	19.5	2	100	0	78	48	0	0	51	1.00
36023055--36023083	4	7.5	4	92	7	51	75	0	0	24	0.80
36025880--36025922	20	2.2	20	83	8	52	44	0	9	46	1.35
36029535--36029569	17	2.1	17	100	0	70	34	0	0	65	0.93
36037294--36037332	15	2.7	15	80	11	55	64	0	0	35	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125