genome.fa.s6.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  111  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34052804--34052828	3	8.3	3	100	0	50	0	32	0	68	0.90
34057109--34057151	20	2.2	20	87	8	61	74	6	2	16	1.14
34071401--34071467	12	5.7	12	80	3	73	70	17	2	8	1.27
34071376--34071458	24	3.8	21	72	20	71	68	19	3	8	1.30
34071401--34071465	24	2.8	24	85	2	96	70	18	3	7	1.24
34071401--34071476	12	6.4	12	80	3	55	68	19	3	7	1.31
34071395--34071476	24	3.5	23	78	6	76	67	19	6	7	1.37
34071455--34071498	20	2.2	20	88	8	63	63	20	9	6	1.46
34071449--34071530	33	2.5	32	81	13	96	68	17	6	8	1.36
34071493--34071562	22	3.2	22	73	18	74	71	15	4	8	1.26
34071493--34071564	21	3.3	23	74	18	80	70	16	4	8	1.27
34071505--34071575	22	3.3	21	76	11	72	69	16	5	8	1.34
34071492--34071575	43	2.0	42	88	2	123	67	19	4	8	1.34
34073429--34073462	12	2.6	14	81	18	54	58	0	29	11	1.33
34073607--34073640	18	1.9	17	88	5	50	38	5	0	55	1.24
34076264--34076318	17	3.4	17	65	10	51	38	32	9	20	1.84
34079626--34079724	30	3.2	30	67	23	78	36	29	5	29	1.79
34079946--34080070	36	3.5	36	86	0	178	32	24	29	13	1.93
34085817--34085873	25	2.5	21	72	22	51	38	1	0	59	1.08
34100420--34100445	3	8.7	3	100	0	52	30	0	0	69	0.89
34102038--34102116	32	2.4	31	78	14	79	31	11	6	50	1.63
34105569--34105615	19	2.3	21	85	7	62	46	0	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34107413--34107448	6	6.0	6	100	0	72	16	0	83	0	0.65
34114991--34115136	58	2.5	58	82	11	183	46	2	1	50	1.21
34115306--34115343	16	2.4	16	90	0	58	31	26	2	39	1.70
34115314--34115344	16	1.9	16	100	0	62	25	25	6	41	1.79
34121592--34121635	22	2.0	22	100	0	88	36	9	13	40	1.76
34125925--34125981	29	2.0	29	86	6	82	31	0	10	57	1.32
34132050--34132099	20	2.7	18	79	11	57	46	2	4	48	1.32
34138948--34138993	19	2.4	19	85	7	58	47	0	4	47	1.21
34145733--34145786	23	2.3	23	75	6	56	31	1	1	64	1.14
34146238--34146271	11	3.0	11	86	4	50	41	0	0	58	0.98
34146562--34146589	7	4.0	7	100	0	56	85	0	0	14	0.59
34156831--34156897	23	2.9	23	78	6	73	59	4	1	34	1.26
34177703--34177751	26	1.9	25	87	4	71	42	4	10	42	1.57
34178588--34178641	27	2.0	28	82	10	67	37	1	1	59	1.19
34180552--34180625	37	2.0	37	97	0	139	33	5	25	35	1.79
34184937--34185026	23	4.0	22	77	9	92	40	25	23	11	1.87
34191102--34191191	23	4.0	22	77	9	92	40	25	23	11	1.87
34207692--34207730	15	2.4	16	87	8	53	35	0	0	64	0.94
34207736--34207785	16	3.2	16	72	13	50	48	2	0	50	1.12
34207720--34207785	30	2.2	30	86	2	87	45	1	0	53	1.09
34212417--34212459	16	2.6	17	89	7	63	46	0	0	53	1.00
34214607--34214636	8	3.8	8	90	0	51	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34225454--34225498	23	2.0	23	86	0	63	44	13	11	31	1.78
34229018--34229075	26	2.2	25	82	8	71	53	6	5	34	1.50
34229025--34229076	26	2.0	27	88	3	79	53	5	3	36	1.43
34235378--34235564	31	6.3	30	69	19	115	21	14	15	48	1.81
34235378--34235569	90	2.1	90	82	4	228	22	14	15	47	1.81
34238694--34238766	37	1.9	38	81	10	87	58	5	0	35	1.21
34239108--34239156	21	2.2	23	85	7	66	16	12	10	61	1.57
34239120--34239165	23	2.0	23	87	12	67	15	8	15	60	1.57
34239120--34239163	22	2.0	22	86	8	63	15	9	15	59	1.61
34240986--34241229	52	4.7	52	78	8	226	27	13	24	33	1.94
34241923--34241988	21	3.1	21	78	8	64	33	12	22	31	1.91
34242346--34242407	30	2.1	29	81	3	70	38	12	12	35	1.82
34242358--34242418	30	2.0	30	87	6	88	29	11	13	45	1.78
34254048--34254092	23	2.0	23	100	0	90	17	13	28	40	1.88
34255736--34255798	31	2.0	31	87	6	92	44	6	4	44	1.50
34256056--34256120	31	2.1	31	85	5	87	29	18	9	43	1.81
34256064--34256131	31	2.2	32	89	5	104	26	22	10	41	1.85
34256354--34256464	31	3.7	30	74	20	106	43	11	18	26	1.85
34258873--34258923	21	2.7	18	75	21	50	27	3	1	66	1.20
34258903--34258936	17	2.0	17	94	0	59	35	0	2	61	1.11
34258941--34258982	18	2.3	19	88	8	61	38	0	4	57	1.20
34259105--34259196	39	2.3	39	90	3	148	40	18	10	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34260552--34260592	21	2.0	21	85	9	57	53	2	2	41	1.27
34262555--34263113	281	2.0	281	100	0	1118	27	20	17	34	1.95
34263700--34263761	24	2.6	23	75	12	63	48	3	4	43	1.40
34264333--34264378	17	2.9	16	87	12	60	34	0	0	65	0.93
34273415--34273528	46	2.5	45	79	12	142	41	24	23	10	1.86
34273391--34273528	23	5.9	23	79	7	111	40	23	24	10	1.87
34276364--34276412	24	2.1	22	85	7	62	22	20	0	57	1.41
34278117--34278335	109	2.0	111	83	8	279	43	8	15	31	1.77
34278524--34278558	17	2.1	17	89	5	54	20	5	5	68	1.31
34280876--34280906	15	2.1	15	100	0	62	19	19	0	61	1.35
34290512--34290546	3	11.7	3	100	0	70	65	0	0	34	0.93
34303496--34303535	19	2.1	19	100	0	80	40	5	22	32	1.76
34304382--34304425	22	2.0	22	100	0	88	40	4	4	50	1.43
34310867--34311188	174	1.9	174	80	2	378	36	17	16	28	1.92
34315786--34315835	18	2.7	20	78	12	61	40	0	0	60	0.97
34330084--34330208	58	2.2	58	82	0	142	49	12	8	29	1.70
34331145--34331169	3	8.3	3	100	0	50	64	0	0	36	0.94
34332621--34332677	29	1.9	30	89	10	91	50	5	1	42	1.35
34332626--34332686	29	2.2	28	83	13	74	52	3	1	42	1.27
34345243--34345294	21	2.5	21	78	9	63	26	19	11	42	1.85
34349561--34349625	28	2.3	27	80	15	69	55	1	3	40	1.25
34350977--34351179	53	3.8	53	74	12	157	24	16	30	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34351000--34351179	53	3.4	53	80	7	213	23	15	30	30	1.95
34351783--34351841	24	2.6	23	82	15	77	35	0	3	61	1.13
34351992--34352060	23	3.0	22	77	8	66	69	2	1	26	1.11
34354187--34354242	23	2.6	22	81	10	62	28	10	0	60	1.30
34355340--34355384	18	2.6	17	83	13	56	73	2	0	24	0.95
34355536--34355580	22	2.0	23	87	12	67	62	4	2	31	1.27
34357251--34357317	31	2.2	31	89	2	100	38	22	11	26	1.89
34358752--34358823	30	2.4	31	85	2	92	20	11	18	50	1.77
34371464--34371512	17	3.0	15	83	16	62	2	22	2	73	1.04
34372316--34372347	16	2.0	16	93	0	55	37	28	6	28	1.81
34374804--34374851	22	2.1	23	81	11	55	50	2	4	43	1.33
34381494--34381701	29	7.2	29	71	20	141	33	2	28	35	1.71
34381441--34381704	58	4.5	58	81	7	313	33	2	29	35	1.70
34381660--34381744	29	2.9	29	77	10	84	34	4	25	35	1.77
34381494--34381730	116	2.0	116	84	3	307	32	3	28	35	1.74
34382719--34382766	3	15.7	3	86	4	69	37	0	0	62	0.95
34383462--34383533	17	4.2	17	78	5	83	51	2	0	45	1.15
34383448--34383533	6	15.0	6	70	13	56	50	2	0	47	1.14
34389705--34389738	16	2.1	16	89	10	52	61	0	38	0	0.96
34390433--34390617	91	2.0	91	100	0	370	25	11	14	48	1.78
34395648--34395706	22	2.7	22	97	0	109	25	23	5	45	1.73
34410666--34410928	95	2.8	95	89	1	368	38	9	7	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34417456--34417482	13	2.1	13	100	0	54	44	18	7	29	1.77
34420212--34420520	156	2.0	154	87	5	453	38	17	10	33	1.85
34432012--34432456	222	2.0	222	98	0	863	38	13	17	30	1.88
34433213--34433261	16	2.9	17	72	6	55	36	2	8	53	1.43
34438844--34438885	17	2.4	18	80	8	50	38	4	7	50	1.51
34443483--34443516	16	2.1	16	100	0	68	52	5	23	17	1.66
34451587--34451745	23	7.2	23	74	12	145	43	22	23	11	1.85
34451593--34451670	39	2.0	39	94	0	138	44	21	20	12	1.85
34453161--34453187	2	13.5	2	100	0	54	48	0	0	51	1.00
34462478--34462511	15	2.2	16	89	5	52	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125