genome.fa.s6.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  100  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30145173--30145268	11	8.5	11	80	15	90	55	4	0	40	1.19
30145187--30145282	17	5.8	16	83	9	104	54	3	1	41	1.23
30145232--30145289	28	2.0	29	83	9	75	55	3	1	39	1.27
30145617--30145748	38	3.5	37	70	13	115	32	19	15	32	1.93
30145558--30146578	76	13.8	76	86	4	1324	32	18	16	33	1.93
30146367--30146564	68	2.9	67	90	3	297	28	21	14	35	1.93
30146409--30146527	31	3.7	31	71	14	98	28	21	15	34	1.94
30158673--30158766	29	3.2	29	67	14	75	36	3	25	35	1.72
30158686--30158844	29	5.4	29	67	11	81	35	3	29	31	1.73
30158660--30158872	59	3.6	58	92	1	318	34	2	30	32	1.71
30158690--30158833	30	4.9	29	69	13	114	36	2	27	32	1.71
30158702--30158854	29	5.2	29	70	12	123	34	2	28	33	1.71
30158778--30158880	28	3.6	29	69	18	72	33	0	30	34	1.65
30159031--30159065	15	2.4	15	95	4	63	45	11	5	37	1.64
30158870--30159214	177	1.9	177	97	0	645	35	14	19	30	1.92
30159169--30159480	162	1.9	161	92	1	527	42	14	17	25	1.87
30161051--30161103	5	10.0	5	79	18	54	54	3	0	41	1.18
30161040--30161101	6	10.8	6	73	16	51	53	6	0	40	1.27
30161051--30161088	17	2.3	16	90	4	58	55	5	0	39	1.23
30161040--30161101	11	5.5	11	81	12	56	53	6	0	40	1.27
30161450--30161581	38	3.5	37	70	13	115	32	19	15	32	1.93
30161391--30162183	76	10.8	76	85	6	931	32	18	15	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30161493--30161911	38	11.3	38	66	17	229	32	17	15	33	1.92
30161549--30161678	64	2.0	64	93	0	224	35	17	14	32	1.90
30161613--30161949	38	8.9	37	67	18	185	32	18	13	34	1.91
30161972--30162169	68	2.9	67	90	3	288	28	22	15	33	1.94
30162014--30162132	31	3.7	31	70	14	98	28	21	16	33	1.95
30165807--30165884	41	1.9	41	94	5	140	41	20	20	17	1.91
30166670--30166731	2	31.0	2	96	0	115	50	1	0	48	1.10
30170783--30170849	29	2.3	29	97	0	125	31	17	8	41	1.81
30173681--30173973	81	3.6	81	84	3	347	31	13	10	45	1.77
30176601--30176666	32	2.0	33	82	8	82	51	6	7	34	1.55
30176643--30176675	17	2.0	17	88	5	50	54	6	0	39	1.25
30176609--30176671	32	2.0	32	84	6	83	49	6	4	39	1.49
30176870--30176921	27	2.0	27	88	11	81	44	3	0	51	1.19
30176882--30176935	26	2.1	25	86	3	72	46	0	1	51	1.11
30178166--30178195	14	2.2	13	94	5	51	0	0	86	13	0.57
30179329--30179374	24	2.1	21	84	15	58	41	0	13	45	1.43
30179869--30179905	2	18.5	2	100	0	74	51	0	0	48	1.00
30181421--30181454	2	17.0	2	100	0	68	50	0	50	0	1.00
30191334--30191441	42	2.5	43	87	3	155	22	27	19	30	1.98
30191423--30191454	15	2.1	15	94	0	55	6	21	25	46	1.74
30191381--30191529	58	2.6	58	95	1	264	18	29	20	31	1.96
30191481--30191512	15	2.1	15	94	0	55	6	21	25	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30191486--30191614	42	3.0	42	89	3	179	19	29	22	28	1.98
30191497--30191657	43	3.8	42	86	3	191	23	29	19	27	1.98
30191497--30191657	85	1.9	85	82	5	200	23	29	19	27	1.98
30196369--30196427	29	2.0	30	86	3	84	28	6	15	49	1.70
30203195--30203240	21	2.2	21	84	7	58	47	4	0	47	1.21
30203363--30203410	26	1.9	24	83	8	60	45	2	18	33	1.61
30205034--30205115	31	2.7	30	80	3	92	24	2	4	68	1.22
30205063--30205096	17	1.9	17	88	5	50	23	2	0	73	0.97
30216521--30216562	18	2.3	18	80	8	50	45	7	0	47	1.30
30218805--30218829	3	8.3	3	100	0	50	32	32	0	36	1.58
30226706--30226766	27	2.3	27	91	5	97	27	3	24	44	1.69
30228546--30228583	19	2.0	19	89	0	58	26	7	0	65	1.19
30240486--30240542	18	3.1	18	73	9	53	75	5	3	15	1.12
30241058--30241094	2	18.5	2	100	0	74	51	0	48	0	1.00
30259996--30260070	24	3.1	24	94	0	123	54	12	12	21	1.69
30261976--30262032	24	2.4	24	90	0	87	50	10	14	24	1.73
30261988--30262038	24	2.1	24	100	0	102	56	7	11	23	1.61
30263459--30263553	27	3.5	27	84	5	129	23	27	17	31	1.97
30277721--30277745	7	3.6	7	100	0	50	12	0	48	40	1.40
30281258--30281306	6	8.2	6	100	0	98	18	0	48	32	1.48
30289802--30289833	14	2.3	15	89	10	50	25	0	3	71	1.00
30290447--30290609	89	1.8	89	81	5	204	41	6	14	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30290446--30290635	89	2.1	89	77	6	197	45	7	12	34	1.70
30290862--30290894	17	2.0	17	88	5	50	33	3	21	42	1.68
30293380--30293489	53	2.1	53	83	8	136	26	18	10	45	1.80
30293473--30293571	52	1.9	52	89	2	155	25	25	10	39	1.87
30302744--30302771	2	14.0	2	100	0	56	0	50	0	50	1.00
30302771--30302797	2	13.5	2	100	0	54	48	0	0	51	1.00
30306953--30306989	19	1.9	19	88	0	56	70	2	2	24	1.14
30323135--30323179	5	9.0	5	100	0	90	40	0	60	0	0.97
30323965--30324059	28	3.2	31	74	16	94	47	8	16	27	1.76
30324129--30324182	16	3.2	17	76	21	60	66	3	1	27	1.19
30324269--30324312	19	2.2	20	80	4	54	59	0	2	38	1.10
30325732--30325923	60	3.2	60	84	3	255	41	2	19	36	1.63
30325728--30325937	90	2.3	90	75	12	241	40	2	20	36	1.66
30325739--30325923	30	6.2	30	84	4	223	40	2	19	37	1.64
30327796--30327860	11	5.9	11	73	12	53	58	0	3	38	1.14
30328110--30329030	91	10.1	92	92	0	1431	29	17	19	33	1.95
30328110--30329030	183	5.0	183	91	0	1434	29	17	19	33	1.95
30328111--30329030	274	3.4	274	94	0	1572	29	17	19	33	1.95
30341025--30341188	90	1.8	90	84	2	222	37	1	25	35	1.64
30341054--30341188	30	4.5	30	93	0	225	38	0	24	36	1.61
30341025--30341188	60	2.7	60	88	1	240	37	1	25	35	1.64
30341517--30341557	21	1.9	22	90	5	66	17	12	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30341804--30341828	9	2.8	9	100	0	50	0	24	0	76	0.80
30342979--30343076	17	5.8	16	78	7	88	56	0	2	41	1.11
30342995--30343070	11	6.8	11	75	14	66	56	0	2	40	1.13
30350888--30350938	21	2.5	20	81	15	59	47	5	0	47	1.26
30356322--30356358	19	1.9	19	94	0	65	40	8	2	48	1.47
30356832--30356887	25	2.2	24	84	12	69	73	7	0	19	1.06
30357141--30357177	4	9.0	4	88	5	56	0	27	0	72	0.84
30364170--30364542	90	4.2	89	87	3	500	52	9	8	28	1.63
30364170--30364574	179	2.3	179	84	4	507	52	10	7	29	1.62
30364908--30364932	13	1.9	13	100	0	50	24	0	4	72	1.02
30371496--30372279	261	3.0	261	84	4	976	29	26	17	27	1.97
30380540--30380597	31	1.9	31	82	10	75	53	5	6	34	1.50
30381785--30381848	30	2.2	27	81	13	65	48	6	9	35	1.61
30383604--30383655	21	2.5	20	75	12	52	36	1	5	55	1.35
30382636--30385351	504	5.4	503	83	4	3066	29	6	13	50	1.67
30382636--30385882	504	6.5	503	80	6	3064	29	7	13	50	1.68
30394588--30394733	48	3.1	48	64	16	135	36	4	3	55	1.36
30394591--30394772	91	2.0	91	100	0	364	37	4	3	54	1.37
30394595--30394734	43	3.1	43	68	20	133	37	4	3	54	1.38
30394625--30394765	43	3.1	44	68	20	137	38	4	2	53	1.37
30394831--30394926	32	3.0	32	75	15	92	46	5	11	36	1.62
30395353--30395388	19	1.9	19	88	5	56	36	2	0	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30400425--30400601	59	3.0	59	85	4	223	38	16	3	41	1.65
30407803--30407849	22	2.1	21	85	14	60	31	0	0	68	0.90
30408404--30408442	21	1.9	21	84	5	53	71	2	7	17	1.21
30409237--30409263	3	9.0	3	100	0	54	66	0	0	33	0.92
30431588--30431625	19	2.0	20	89	5	60	57	7	0	34	1.28
30434007--30434042	17	2.1	18	89	5	56	22	0	2	75	0.94
30435291--30435343	16	3.5	15	78	12	54	71	5	1	20	1.16
30439883--30440038	76	2.1	76	91	0	249	34	12	11	41	1.80
30442063--30442172	23	4.8	23	83	4	150	14	21	23	40	1.90
30442063--30442176	46	2.5	47	85	5	171	14	21	22	41	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125