genome.fa.s6.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  33  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9345541--9345725	78	2.4	78	84	0	217	25	18	29	25	1.98
9345785--9346489	305	2.3	306	91	0	1164	31	17	15	35	1.91
9345785--9346489	102	6.9	102	92	0	1164	31	17	15	35	1.91
9346617--9347006	48	8.1	48	83	3	435	13	24	23	37	1.91
9346623--9347016	97	4.1	97	83	3	463	14	24	23	37	1.92
9346617--9347006	145	2.7	144	81	6	419	13	24	23	37	1.91
9346887--9347036	49	3.1	48	72	12	126	16	24	20	38	1.92
9346848--9347048	97	2.1	97	84	0	258	15	25	19	38	1.91
9346984--9347143	80	2.0	80	88	0	239	15	25	18	40	1.90
9348408--9348464	12	5.1	11	76	8	53	0	19	3	77	0.92
9348408--9348473	12	5.4	12	75	21	50	0	19	3	77	0.90
9348401--9348479	15	4.8	15	70	22	52	1	20	2	75	0.98
9354054--9354096	22	2.0	22	90	0	68	23	13	41	20	1.88
9358387--9359264	23	38.2	23	86	0	1148	33	4	14	47	1.65
9359333--9359422	37	2.5	37	96	1	164	26	10	24	38	1.87
9359333--9359443	36	3.1	36	89	1	159	30	10	23	35	1.89
9363811--9363844	16	2.1	17	94	5	61	32	0	17	50	1.47
9364303--9364388	27	3.2	27	74	0	100	26	27	27	17	1.98
9367684--9367767	28	3.1	28	77	13	77	33	0	13	53	1.39
9367688--9367782	26	3.6	26	74	5	66	34	0	12	52	1.39
9367913--9368017	7	15.0	7	72	11	65	28	0	26	43	1.61
9367823--9367937	53	2.2	55	77	13	125	26	1	25	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9367957--9368039	28	3.0	27	71	16	62	26	2	24	46	1.64
9372083--9372139	27	2.1	28	83	3	71	21	22	29	26	1.99
9377364--9377791	23	18.7	23	86	1	554	35	5	13	45	1.67
9380016--9380048	14	2.4	14	90	10	50	24	3	3	69	1.16
9380032--9380077	22	2.0	23	87	4	67	36	2	2	58	1.22
9380832--9380886	25	2.2	25	100	0	110	32	25	14	27	1.95
9381612--9381649	3	12.7	3	100	0	76	0	34	0	65	0.93
9392011--9392064	23	2.4	23	87	3	74	50	11	18	20	1.77
9393238--9393305	30	2.3	30	89	0	100	23	33	16	26	1.95
9395118--9395168	19	2.7	20	73	14	54	64	0	0	35	0.94
9406820--9407163	61	5.7	60	75	9	183	28	14	16	40	1.88
9406868--9407165	60	4.9	59	78	9	237	28	15	15	40	1.87
9406924--9407165	61	4.0	61	80	7	244	28	16	14	40	1.89
9410529--9410685	82	1.9	82	90	2	253	47	5	5	41	1.49
9410821--9410855	17	2.1	16	89	5	52	48	8	0	42	1.33
9410812--9410868	28	2.0	28	82	0	69	43	8	0	47	1.34
9413812--9413861	26	2.0	25	84	4	64	34	2	0	64	1.05
9414601--9414944	59	5.7	59	72	7	212	41	15	16	25	1.88
9414582--9414953	60	6.2	58	72	13	231	39	15	18	26	1.90
9414582--9414951	120	3.1	121	77	9	289	40	15	17	26	1.90
9415006--9415122	55	2.1	54	83	7	139	37	15	21	25	1.93
9419617--9419651	18	1.9	18	88	0	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9430421--9430477	29	1.9	30	89	3	89	57	7	1	33	1.36
9434576--9434694	58	2.1	58	88	4	179	47	21	0	31	1.57
9436383--9436830	195	2.3	195	85	4	575	28	20	27	24	1.99
9439802--9439846	19	2.4	19	81	7	56	37	0	4	57	1.19
9440657--9440703	22	2.2	22	88	3	69	17	6	2	74	1.12
9445016--9445060	19	2.4	19	81	7	56	37	0	4	57	1.19
9445862--9445891	15	1.9	16	93	6	53	20	13	0	66	1.24
9450870--9451015	52	2.6	55	77	10	172	26	8	17	47	1.76
9472962--9473000	21	1.9	19	85	10	51	7	35	2	53	1.43
9493820--9493875	21	2.7	21	83	5	69	35	10	23	30	1.89
9498540--9498577	20	1.9	19	89	5	58	63	2	0	34	1.09
9503631--9503975	173	2.0	173	95	0	618	30	22	19	26	1.98
9513515--9513551	15	2.2	17	86	13	51	13	0	18	67	1.23
9520099--9520286	9	20.6	9	72	14	118	62	5	0	30	1.22
9520135--9520249	38	3.1	38	76	17	98	62	5	0	32	1.17
9520168--9520273	29	3.7	29	69	18	78	58	4	0	36	1.19
9520715--9520884	9	18.6	9	66	14	71	35	1	3	59	1.22
9520715--9520764	17	2.8	17	78	6	55	30	0	2	68	1.01
9520752--9520821	28	2.5	28	79	6	70	34	2	2	60	1.26
9520752--9520836	29	3.0	29	79	6	84	36	2	3	57	1.29
9520723--9520877	19	8.4	19	66	20	62	38	1	2	58	1.20
9520872--9520906	10	3.2	11	88	12	54	14	0	2	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9523331--9523425	45	2.0	48	84	8	124	38	8	11	41	1.72
9531120--9531452	30	11.2	29	74	9	219	36	6	22	35	1.79
9531145--9531456	59	5.3	60	80	6	280	36	5	22	36	1.77
9533654--9534254	208	2.9	209	88	2	868	21	22	19	36	1.95
9534583--9534817	50	4.7	50	78	6	219	17	29	17	34	1.93
9534587--9534799	100	2.1	99	81	5	243	17	29	18	34	1.94
9535728--9535776	18	2.8	18	84	3	64	2	22	0	75	0.90
9535738--9535799	13	4.6	13	76	6	52	1	22	0	75	0.88
9535758--9535798	21	1.9	22	95	5	75	0	21	0	78	0.76
9535760--9535812	27	2.0	27	82	14	65	1	20	0	77	0.87
9540831--9540903	32	2.3	32	79	9	78	65	6	5	21	1.37
9540957--9541051	29	3.3	28	75	8	93	30	9	28	31	1.89
9540970--9541167	29	6.8	29	73	13	113	32	7	26	33	1.84
9541014--9541231	59	3.7	57	80	8	190	34	4	24	36	1.76
9541088--9541234	29	5.0	29	72	17	115	35	3	25	36	1.73
9541061--9541248	58	3.2	59	84	6	193	35	5	23	35	1.78
9541061--9541261	60	3.4	59	83	5	210	34	5	23	36	1.78
9560398--9560458	30	2.1	29	82	11	72	62	1	34	1	1.15
9560873--9560913	17	2.4	18	80	19	52	17	21	14	46	1.84
9565950--9565995	24	1.9	23	82	8	56	52	6	6	34	1.53
9567019--9567067	21	2.5	20	86	6	64	8	18	0	73	1.07
9568000--9568072	7	9.7	7	76	18	67	79	0	4	16	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9568005--9568072	31	2.3	31	82	10	88	80	0	4	14	0.85
9573352--9573470	37	3.2	37	84	0	157	18	23	27	30	1.98
9573922--9574080	78	2.1	77	95	1	282	32	8	23	35	1.85
9574807--9574894	44	2.0	44	100	0	176	25	6	25	43	1.79
9580716--9580815	37	2.7	37	89	3	148	16	23	30	31	1.96
9582370--9582683	42	7.5	42	76	6	260	27	26	11	35	1.91
9582378--9582606	83	2.7	84	84	2	282	28	26	10	35	1.89
9582378--9582683	84	3.7	83	82	2	301	26	26	11	35	1.90
9589381--9589463	42	2.0	42	85	2	114	28	21	14	34	1.93
9589399--9589793	42	9.5	42	78	9	373	25	26	11	35	1.90
9589399--9589745	121	2.8	122	78	10	301	26	26	11	35	1.90
9589398--9589749	84	4.2	84	88	5	493	25	26	11	35	1.90
9594194--9594249	25	2.2	25	96	0	103	46	5	10	37	1.62
9600660--9600757	18	5.6	17	75	3	79	21	19	25	33	1.97
9600680--9600757	36	2.2	36	84	6	97	21	20	24	33	1.97
9606524--9606628	18	6.0	17	79	7	86	23	20	23	31	1.98
9608249--9608540	52	5.6	52	88	2	433	34	24	14	27	1.93
9611627--9611669	21	2.0	22	90	4	70	34	18	2	44	1.63
9611632--9611679	22	2.3	21	86	10	64	35	18	0	45	1.50
9613763--9613834	23	3.1	23	81	0	99	25	11	15	48	1.77
9617556--9617622	19	3.5	19	87	2	89	38	22	17	20	1.93
9642320--9642403	40	2.1	40	93	2	143	59	2	3	34	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9642379--9642439	28	2.1	29	82	14	74	63	1	3	31	1.20
9644612--9644654	17	2.5	17	80	0	50	60	0	0	39	0.97
9674397--9674577	41	4.3	41	80	3	200	37	10	26	25	1.88
9675073--9675098	9	2.9	9	100	0	52	65	11	11	11	1.48
9682131--9682320	41	4.6	41	82	3	193	36	10	26	26	1.89
9682131--9682334	84	2.5	81	78	5	203	36	10	26	26	1.89
9705308--9705351	10	4.4	10	77	11	54	6	20	0	72	1.07
9718777--9718824	12	4.0	11	80	17	51	81	0	10	8	0.88
9726025--9726435	216	1.9	217	97	0	779	35	14	17	31	1.91
9747998--9748035	14	2.6	16	84	16	55	18	5	5	71	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125